ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl16g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1PLCB3_MOUSE (P51432) 1-phosphatidylinositol-4,5-bisphosphate pho... 28 5.5
2RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine syntha... 28 7.1
3GPV_MOUSE (O08742) Platelet glycoprotein V precursor (GPV) (CD42... 28 7.1
4GDF8_SYLGR (Q5USV6) Growth/differentiation factor 8 precursor (G... 28 7.1
5GDF8_SHEEP (O18830) Growth/differentiation factor 8 precursor (G... 28 7.1
6GDF8_PIG (O18831) Growth/differentiation factor 8 precursor (GDF... 28 7.1
7GDF8_PAPHA (O18828) Growth/differentiation factor 8 precursor (G... 28 7.1
8GDF8_MACFA (Q95J86) Growth/differentiation factor 8 precursor (G... 28 7.1
9GDF8_LEPCA (Q8HY52) Growth/differentiation factor 8 precursor (G... 28 7.1
10GDF8_HUMAN (O14793) Growth/differentiation factor 8 precursor (G... 28 7.1
11GDF8_HORSE (Q9GM97) Growth/differentiation factor 8 precursor (G... 28 7.1
12GDF8_HEMJE (Q5USV8) Growth/differentiation factor 8 precursor (G... 28 7.1
13GDF8_CAPIB (Q5USV9) Growth/differentiation factor 8 precursor (G... 28 7.1
14GDF8_CAPHI (Q6T5B8) Growth/differentiation factor 8 precursor (G... 28 7.1
15GDF8_ANTAM (Q5USV5) Growth/differentiation factor 8 precursor (G... 28 7.1
16GDF8_AEPME (Q5USV7) Growth/differentiation factor 8 precursor (G... 28 7.1
17GDF8_RAT (O35312) Growth/differentiation factor 8 precursor (GDF... 27 9.3
18GDF8_MOUSE (O08689) Growth/differentiation factor 8 precursor (G... 27 9.3
19POLN_MIDDV (P03318) Nonstructural polyprotein (Polyprotein nsP12... 27 9.3
20GDF8_VULVU (Q6DTL9) Growth/differentiation factor 8 precursor (G... 27 9.3
21GDF8_CANFA (Q6UKZ8) Growth/differentiation factor 8 precursor (G... 27 9.3
22GDF8_ALOLA (Q6J1J2) Growth/differentiation factor 8 precursor (G... 27 9.3 
>PLCB3_MOUSE (P51432) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
           beta 3 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
           (Phospholipase C-beta-3) (PLC-beta-3)
          Length = 1234

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +2

Query: 5   PPSDPGCRIPKPSPPDPLDA--RWP 73
           P   PG ++P    P+PLDA  RWP
Sbjct: 897 PCQQPGSQLPSNPTPNPLDASPRWP 921
to top
>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 550

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 63  ASRGSGGEGLGIRHPGSEGG 4
           A+RG GG G G R PG  GG
Sbjct: 506 ANRGPGGPGGGARGPGGPGG 525
to top
>GPV_MOUSE (O08742) Platelet glycoprotein V precursor (GPV) (CD42D antigen)|
          Length = 567

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 16  PWMPDPQTLPSRPP 57
           PW PDP++LP  PP
Sbjct: 470 PWCPDPRSLPLDPP 483
to top
>GDF8_SYLGR (Q5USV6) Growth/differentiation factor 8 precursor (GDF-8)|
           (Myostatin)
          Length = 375

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 34  QTLPSRPPRREMADDNXXXXXXXDHVSEGARPEDDTHTREE 156
           Q LP  PP RE+ D         D  S+G+  +DD H   E
Sbjct: 79  QLLPKAPPLRELIDQ---YDVQRDDSSDGSLEDDDYHVTTE 116
to top
>GDF8_SHEEP (O18830) Growth/differentiation factor 8 precursor (GDF-8)|
           (Myostatin)
          Length = 375

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 34  QTLPSRPPRREMADDNXXXXXXXDHVSEGARPEDDTHTREE 156
           Q LP  PP RE+ D         D  S+G+  +DD H   E
Sbjct: 79  QLLPKAPPLRELIDQ---YDVQRDDSSDGSLEDDDYHVTTE 116
to top
>GDF8_PIG (O18831) Growth/differentiation factor 8 precursor (GDF-8)|
           (Myostatin)
          Length = 375

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 34  QTLPSRPPRREMADDNXXXXXXXDHVSEGARPEDDTHTREE 156
           Q LP  PP RE+ D         D  S+G+  +DD H   E
Sbjct: 79  QLLPKAPPLRELIDQ---YDVQRDDSSDGSLEDDDYHATTE 116
to top
>GDF8_PAPHA (O18828) Growth/differentiation factor 8 precursor (GDF-8)|
           (Myostatin)
          Length = 375

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 34  QTLPSRPPRREMADDNXXXXXXXDHVSEGARPEDDTHTREE 156
           Q LP  PP RE+ D         D  S+G+  +DD H   E
Sbjct: 79  QLLPKAPPLRELIDQ---YDVQRDDSSDGSLEDDDYHATTE 116
to top
>GDF8_MACFA (Q95J86) Growth/differentiation factor 8 precursor (GDF-8)|
           (Myostatin)
          Length = 375

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 34  QTLPSRPPRREMADDNXXXXXXXDHVSEGARPEDDTHTREE 156
           Q LP  PP RE+ D         D  S+G+  +DD H   E
Sbjct: 79  QLLPKAPPLRELIDQ---YDVQRDDSSDGSLEDDDYHATTE 116
to top
>GDF8_LEPCA (Q8HY52) Growth/differentiation factor 8 precursor (GDF-8)|
           (Myostatin)
          Length = 375

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 34  QTLPSRPPRREMADDNXXXXXXXDHVSEGARPEDDTHTREE 156
           Q LP  PP RE+ D         D  S+G+  +DD H   E
Sbjct: 79  QLLPKAPPLRELIDQ---YDVQRDDSSDGSLEDDDYHATTE 116
to top
>GDF8_HUMAN (O14793) Growth/differentiation factor 8 precursor (GDF-8)|
           (Myostatin)
          Length = 375

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 34  QTLPSRPPRREMADDNXXXXXXXDHVSEGARPEDDTHTREE 156
           Q LP  PP RE+ D         D  S+G+  +DD H   E
Sbjct: 79  QLLPKAPPLRELIDQ---YDVQRDDSSDGSLEDDDYHATTE 116
to top
>GDF8_HORSE (Q9GM97) Growth/differentiation factor 8 precursor (GDF-8)|
           (Myostatin)
          Length = 375

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 34  QTLPSRPPRREMADDNXXXXXXXDHVSEGARPEDDTHTREE 156
           Q LP  PP RE+ D         D  S+G+  +DD H   E
Sbjct: 79  QLLPKAPPLRELIDQ---YDVQRDDSSDGSLEDDDYHATTE 116
to top
>GDF8_HEMJE (Q5USV8) Growth/differentiation factor 8 precursor (GDF-8)|
           (Myostatin)
          Length = 375

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 34  QTLPSRPPRREMADDNXXXXXXXDHVSEGARPEDDTHTREE 156
           Q LP  PP RE+ D         D  S+G+  +DD H   E
Sbjct: 79  QLLPKAPPLRELIDQ---YDVQRDDSSDGSLEDDDYHVTTE 116
to top
>GDF8_CAPIB (Q5USV9) Growth/differentiation factor 8 precursor (GDF-8)|
           (Myostatin)
          Length = 375

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 34  QTLPSRPPRREMADDNXXXXXXXDHVSEGARPEDDTHTREE 156
           Q LP  PP RE+ D         D  S+G+  +DD H   E
Sbjct: 79  QLLPKAPPLRELIDQ---YDVQRDDSSDGSLEDDDYHVTTE 116
to top
>GDF8_CAPHI (Q6T5B8) Growth/differentiation factor 8 precursor (GDF-8)|
           (Myostatin)
          Length = 375

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 34  QTLPSRPPRREMADDNXXXXXXXDHVSEGARPEDDTHTREE 156
           Q LP  PP RE+ D         D  S+G+  +DD H   E
Sbjct: 79  QLLPKAPPLRELIDQ---YDVQRDDSSDGSLEDDDYHVTTE 116
to top
>GDF8_ANTAM (Q5USV5) Growth/differentiation factor 8 precursor (GDF-8)|
           (Myostatin)
          Length = 375

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 34  QTLPSRPPRREMADDNXXXXXXXDHVSEGARPEDDTHTREE 156
           Q LP  PP RE+ D         D  S+G+  +DD H   E
Sbjct: 79  QLLPKAPPLRELIDQ---YDVQRDDSSDGSLEDDDYHATTE 116
to top
>GDF8_AEPME (Q5USV7) Growth/differentiation factor 8 precursor (GDF-8)|
           (Myostatin)
          Length = 375

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 34  QTLPSRPPRREMADDNXXXXXXXDHVSEGARPEDDTHTREE 156
           Q LP  PP RE+ D         D  S+G+  +DD H   E
Sbjct: 79  QLLPKAPPLRELIDQ---YDVQRDDSSDGSLEDDDYHATTE 116
to top
>GDF8_RAT (O35312) Growth/differentiation factor 8 precursor (GDF-8)|
           (Myostatin)
          Length = 376

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 34  QTLPSRPPRREMADDNXXXXXXXDHVSEGARPEDDTHTREE 156
           Q LP  PP RE+ D         D  S+G+  +DD H   E
Sbjct: 80  QLLPRAPPLRELIDQ---YDVQRDDSSDGSLEDDDYHATTE 117
to top
>GDF8_MOUSE (O08689) Growth/differentiation factor 8 precursor (GDF-8)|
           (Myostatin)
          Length = 376

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 34  QTLPSRPPRREMADDNXXXXXXXDHVSEGARPEDDTHTREE 156
           Q LP  PP RE+ D         D  S+G+  +DD H   E
Sbjct: 80  QLLPRAPPLRELIDQ---YDVQRDDSSDGSLEDDDYHATTE 117
to top
>POLN_MIDDV (P03318) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
           [Contains: Nonstructural protein 3 (nsP3); Nonstructural
           protein 3' (nsP3'); RNA-directed RNA polymerase nsP4 (EC
           2.7.7.48) (Nonstructural protein 4) (nsP4)] (Fragment)
          Length = 994

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 22  MPDPQTLPSRPPRREMA 72
           +P P+T+P RPPRR+ A
Sbjct: 321 VPAPRTMPVRPPRRKKA 337
to top
>GDF8_VULVU (Q6DTL9) Growth/differentiation factor 8 precursor (GDF-8)|
           (Myostatin)
          Length = 375

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 34  QTLPSRPPRREMADDNXXXXXXXDHVSEGARPEDDTHTREE 156
           Q LP  PP RE+ D         D  S+G+  +DD H   E
Sbjct: 79  QLLPRAPPLRELIDQ---YDVQRDDSSDGSLEDDDYHATTE 116
to top
>GDF8_CANFA (Q6UKZ8) Growth/differentiation factor 8 precursor (GDF-8)|
           (Myostatin)
          Length = 375

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 34  QTLPSRPPRREMADDNXXXXXXXDHVSEGARPEDDTHTREE 156
           Q LP  PP RE+ D         D  S+G+  +DD H   E
Sbjct: 79  QLLPRAPPLRELIDQ---YDVQRDDSSDGSLEDDDYHATTE 116
to top
>GDF8_ALOLA (Q6J1J2) Growth/differentiation factor 8 precursor (GDF-8)|
           (Myostatin)
          Length = 375

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 34  QTLPSRPPRREMADDNXXXXXXXDHVSEGARPEDDTHTREE 156
           Q LP  PP RE+ D         D  S+G+  +DD H   E
Sbjct: 79  QLLPRAPPLRELIDQ---YDVQRDDSSDGSLEDDDYHATTE 116


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.135    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,453,775
Number of Sequences: 219361
Number of extensions: 474280
Number of successful extensions: 2103
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2095
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top