ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl16f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CUL1_ARATH (Q94AH6) Cullin-1 29 3.9
2ABCA1_MOUSE (P41233) ATP-binding cassette sub-family A member 1 ... 28 5.1

>CUL1_ARATH (Q94AH6) Cullin-1|
          Length = 738

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +1

Query: 154 ERKTVDLEEGWAFM 195
           ERKT+DLE+GW +M
Sbjct: 2   ERKTIDLEQGWDYM 15



to top

>ABCA1_MOUSE (P41233) ATP-binding cassette sub-family A member 1 (ATP-binding|
            cassette transporter 1) (ATP-binding cassette 1) (ABC-1)
          Length = 2261

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 91   SSCRVASSPLSCVGKENGRTRREGKAGRG 5
            SSCR +SS +SC+ KE+  ++    AG G
Sbjct: 1140 SSCRNSSSTVSCLKKEDSVSQSSSDAGLG 1168


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,900,662
Number of Sequences: 219361
Number of extensions: 262514
Number of successful extensions: 619
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 80,573,946
effective HSP length: 41
effective length of database: 71,580,145
effective search space used: 1717923480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top