ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl16f08 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 167 bits (423), Expect = 9e-42 Identities = 79/114 (69%), Positives = 96/114 (84%) Frame = +2 Query: 74 VGGIVSDLTGGPRGAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNV 253 +GG++ LTG + A LKG+VVLMRKN LD NDFGAT++DG+ E LG+GVTCQLISST V Sbjct: 3 LGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTAV 62 Query: 254 DHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIV 415 D +NGGRGKVGAEA LEQW+ T+LP +TTGE+KF +TFDW V+KLGVPGAI+V Sbjct: 63 DQDNGGRGKVGAEAELEQWV--TSLPSLTTGESKFGLTFDWEVEKLGVPGAIVV 114
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 166 bits (420), Expect = 2e-41 Identities = 81/114 (71%), Positives = 96/114 (84%) Frame = +2 Query: 74 VGGIVSDLTGGPRGAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNV 253 +GGI+ +TG + + LKG+VVLMRKN LD NDFGATV+DG+ E LG+GVTCQLISST V Sbjct: 2 LGGIIDTITGSSKQSRLKGTVVLMRKNVLDLNDFGATVIDGLGEFLGKGVTCQLISSTAV 61 Query: 254 DHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIV 415 D NNG RGKVGAEA+LEQW L ++LP +TTGE++F VTFDW VDKLGVPGAIIV Sbjct: 62 DPNNGNRGKVGAEASLEQW-LTSSLPSLTTGESRFGVTFDWDVDKLGVPGAIIV 114
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 162 bits (411), Expect = 2e-40 Identities = 79/114 (69%), Positives = 97/114 (85%) Frame = +2 Query: 74 VGGIVSDLTGGPRGAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNV 253 +GGI+ LTG + A LKGS+VLMRKNALD NDFGATV+DG++E LGRGVTCQL+SS+ V Sbjct: 2 LGGIIGGLTGN-KNARLKGSLVLMRKNALDINDFGATVIDGISEFLGRGVTCQLVSSSLV 60 Query: 254 DHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIV 415 D NNG RG+VG EA+LEQWL T+LP +TTGE+KF VTF+W V+K+G+PGAIIV Sbjct: 61 DPNNGNRGRVGTEASLEQWL--TSLPSLTTGESKFGVTFEWEVEKMGIPGAIIV 112
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 113 bits (283), Expect = 2e-25 Identities = 59/114 (51%), Positives = 78/114 (68%) Frame = +2 Query: 74 VGGIVSDLTGGPRGAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNV 253 +GG+ LTG G +KG VLM + LD DF A+++D V E+ G +TCQL+S+T Sbjct: 2 LGGLKDKLTG-KNGNKIKGLAVLMSRKLLDPRDFTASLLDNVHEVFGNSITCQLVSATVA 60 Query: 254 DHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIV 415 D NN GRG VG+EANLEQ L T+LP ++ GE+K V F+W +DK GVPGAII+ Sbjct: 61 DQNNEGRGIVGSEANLEQGL--TDLPSVSQGESKLTVRFNWEMDKHGVPGAIII 112
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 101 bits (252), Expect = 6e-22 Identities = 57/115 (49%), Positives = 77/115 (66%), Gaps = 1/115 (0%) Frame = +2 Query: 74 VGGIVSDLTGGPRGAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLIS-STN 250 +GGIV + G +KG V+LM+KN LDF + GA+V+DG+++LLG+ V+ QLIS S N Sbjct: 3 LGGIVDAILGKDDRPKVKGRVILMKKNVLDFINIGASVVDGISDLLGQKVSIQLISGSVN 62 Query: 251 VDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIV 415 D G GK+ A LE WL T++ IT GE+ F+VTFDW D+ GVPGA I+ Sbjct: 63 YD---GLEGKLSNPAYLESWL--TDITPITAGESTFSVTFDWDRDEFGVPGAFII 112
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 97.1 bits (240), Expect = 2e-20 Identities = 51/110 (46%), Positives = 70/110 (63%), Gaps = 3/110 (2%) Frame = +2 Query: 95 LTGGPRGA---HLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNVDHNN 265 LTGG +KG+VVLM+KN LDFNDF A+ +D + E LG +T +L+SS D N Sbjct: 9 LTGGGNETTTKKVKGTVVLMKKNVLDFNDFNASFLDRLHEFLGNKITLRLVSSDVTDSEN 68 Query: 266 GGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIV 415 G +GK+G A+LE W+ T + +T GE+ F VTFD+ D G PGA ++ Sbjct: 69 GSKGKLGKAAHLEDWI--TTITSLTAGESAFKVTFDYETD-FGYPGAFLI 115
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 87.4 bits (215), Expect = 1e-17 Identities = 51/116 (43%), Positives = 70/116 (60%), Gaps = 5/116 (4%) Frame = +2 Query: 83 IVSDLTGGPRGAH-----LKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISST 247 ++ L GG G H +KG+VV+M+KNALDF D ++ D + E LG+ V+ QLISS Sbjct: 1 MLGQLVGGLIGGHHDSKKVKGTVVMMKKNALDFTDLAGSLTDKIFEALGQKVSFQLISSV 60 Query: 248 NVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIV 415 D NG +GK A LE +LL L + GE F VTFDW+ ++ GVPGA ++ Sbjct: 61 QSDPANGLQGKHSNPAYLENFLL--TLTPLAAGETAFGVTFDWN-EEFGVPGAFVI 113
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 80.5 bits (197), Expect = 1e-15 Identities = 47/120 (39%), Positives = 72/120 (60%), Gaps = 6/120 (5%) Frame = +2 Query: 74 VGGIVSDLTGGPRGA----HLKGSVVLMRKNALDFNDFGATVMDGVTELLGR--GVTCQL 235 V G LTG + A ++G+ VL++K+ L DF A+++DGV +LG GV +L Sbjct: 3 VQGFFDRLTGRNKEAWKEGRIRGTAVLVKKDVLGLGDFHASLLDGVHNILGHKEGVAFRL 62 Query: 236 ISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIV 415 +S+T D +NGGRGK+G A+LE+ L + GE+ F V F+W + G+PGA++V Sbjct: 63 VSATARDPSNGGRGKLGKPAHLEE--LVVTMKSTAAGESVFRVAFEWD-ESQGIPGAVVV 119
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 79.7 bits (195), Expect = 2e-15 Identities = 49/115 (42%), Positives = 66/115 (57%), Gaps = 1/115 (0%) Frame = +2 Query: 74 VGGIVSDLTGGPRGAH-LKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTN 250 +G I S L GG + +KG+VV+M KN LDF D ++ + ++LG+ V+ QLISS Sbjct: 2 IGQITSGLFGGHDDSKKVKGTVVMMNKNVLDFTDLAGSLTGKIFDVLGQKVSFQLISSVQ 61 Query: 251 VDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIV 415 D NG +GK A LE L T P E F VTFDW+ ++ GVPGA I+ Sbjct: 62 GDPTNGLQGKHSNPAYLENSLF-TLTPLTAGSETAFGVTFDWN-EEFGVPGAFII 114
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 75.5 bits (184), Expect = 5e-14 Identities = 48/120 (40%), Positives = 68/120 (56%), Gaps = 18/120 (15%) Frame = +2 Query: 110 RGAHLKGSVVLMRKNALDFN--------------DFGATV----MDGVTELLGRGVTCQL 235 +G ++G+VVLMRKN LDFN D G + +DG+T LGR V+ QL Sbjct: 11 KGHKIRGTVVLMRKNVLDFNTIVSIGGGNVHGVIDSGINIIGSTLDGLTAFLGRSVSLQL 70 Query: 236 ISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIV 415 IS+T D N G+GKVG + LE L +LP + GE+ F + F+W ++G+PGA + Sbjct: 71 ISATKSDAN--GKGKVGKDTFLEGVL--ASLPTLGAGESAFNIHFEWD-HEMGIPGAFYI 125
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 73.9 bits (180), Expect = 1e-13 Identities = 50/135 (37%), Positives = 70/135 (51%), Gaps = 18/135 (13%) Frame = +2 Query: 65 MFGVGGIVSDLTGGPRGAHLKGSVVLMRKNALDFNDFG------------------ATVM 190 MF V G+ L G G +KG+VVLMRKN LDFN + + Sbjct: 1 MFSVPGVSGILNRGG-GHKIKGTVVLMRKNVLDFNSVADLTKGNVGGLIGTGLNVVGSTL 59 Query: 191 DGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTF 370 D +T LGR V QLIS+T N G+GKVG + LE ++ +LP + GE+ F + F Sbjct: 60 DNLTAFLGRSVALQLISATKPLAN--GKGKVGKDTFLEGIIV--SLPTLGAGESAFNIQF 115 Query: 371 DWSVDKLGVPGAIIV 415 +W + +G+PGA + Sbjct: 116 EWD-ESMGIPGAFYI 129
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 72.8 bits (177), Expect = 3e-13 Identities = 48/128 (37%), Positives = 70/128 (54%), Gaps = 13/128 (10%) Frame = +2 Query: 71 GVGGIVSDLTGGPRGAHLKGSVVLMRKNALDFN-------------DFGATVMDGVTELL 211 GV GI++ RG +KG+VVLMRKN LD N D + +D +T L Sbjct: 4 GVTGILN------RGHKIKGTVVLMRKNVLDINSLTTVGGVIGQGFDILGSTVDNLTAFL 57 Query: 212 GRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKL 391 GR V+ QLIS+T D G+GK+G LE + ++LP + G++ F + F+W D + Sbjct: 58 GRSVSLQLISATKPDAT--GKGKLGKATFLEG--IISSLPTLGAGQSAFKIHFEWD-DDM 112 Query: 392 GVPGAIIV 415 G+PGA + Sbjct: 113 GIPGAFYI 120
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 72.4 bits (176), Expect = 4e-13 Identities = 43/101 (42%), Positives = 62/101 (61%) Frame = +2 Query: 113 GAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAE 292 G +KG+VVLM KN L+ N G+ V D + LGR V+ QLIS+T D + G+GKVG + Sbjct: 5 GHKIKGTVVLMPKNELEVNPDGSAV-DNLNAFLGRSVSLQLISATKADAH--GKGKVGKD 61 Query: 293 ANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIV 415 LE + T+LP + GE+ F + F+W +G+PGA + Sbjct: 62 TFLEG--INTSLPTLGAGESAFNIHFEWD-GSMGIPGAFYI 99
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 67.4 bits (163), Expect = 1e-11 Identities = 44/115 (38%), Positives = 62/115 (53%), Gaps = 13/115 (11%) Frame = +2 Query: 110 RGAHLKGSVVLMRKNALDFN-------------DFGATVMDGVTELLGRGVTCQLISSTN 250 RG +KG+VVLMRKN L N D + +D +T LGR V+ QLIS+T Sbjct: 8 RGHKIKGTVVLMRKNVLHVNSVTSVGGIIGQGLDLVGSTLDTLTAFLGRPVSLQLISATK 67 Query: 251 VDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIV 415 D N G+GK+G LE + T+LP + G++ F + F+W D G+ GA + Sbjct: 68 ADAN--GKGKLGKATFLEG--IITSLPTLGAGQSAFKINFEWD-DGSGILGAFYI 117
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 66.2 bits (160), Expect = 3e-11 Identities = 45/124 (36%), Positives = 62/124 (50%), Gaps = 22/124 (17%) Frame = +2 Query: 110 RGAHLKGSVVLMRKNALDFNDFGAT----------------------VMDGVTELLGRGV 223 +G +KG+VVLM KN LDFN + V+D T LGR + Sbjct: 7 KGQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRNI 66 Query: 224 TCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPG 403 + QLIS+T D G GKVG E LE+ LPT LP + ++ F++ F+W G+PG Sbjct: 67 SMQLISATQTD--GSGNGKVGKEVYLEKH-LPT-LPTLGARQDAFSIFFEWDA-SFGIPG 121 Query: 404 AIIV 415 A + Sbjct: 122 AFYI 125
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 64.3 bits (155), Expect = 1e-10 Identities = 43/122 (35%), Positives = 62/122 (50%), Gaps = 20/122 (16%) Frame = +2 Query: 110 RGAHLKGSVVLMRKNALDFN--------------------DFGATVMDGVTELLGRGVTC 229 RG LKG+V+LM+KN LD N +++D T LGR V Sbjct: 8 RGQKLKGTVILMQKNVLDINALTAAQSPSGIIGGAFGVVGSIAGSIIDTATAFLGRSVRL 67 Query: 230 QLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAI 409 +LIS+T D + G+GKV EA LE L T++P + ++ F+V F+W +G PGA Sbjct: 68 RLISATVADAS--GKGKVSKEAFLEGLL--TSIPTLGDKQSAFSVHFEWD-SNMGTPGAF 122 Query: 410 IV 415 + Sbjct: 123 YI 124
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 63.2 bits (152), Expect = 2e-10 Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 22/124 (17%) Frame = +2 Query: 110 RGAHLKGSVVLMRKNALDFNDFGAT----------------------VMDGVTELLGRGV 223 RG +KG+VVLM KN DFN+F +T ++DG T + R + Sbjct: 7 RGHKIKGTVVLMTKNVFDFNEFVSTTRGGIVGAAGGLFGAATDIVGGIVDGATAIFSRNI 66 Query: 224 TCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPG 403 QLIS+T D G GKVG + LE+ L +LP + ++ F V F+W + G+P Sbjct: 67 AIQLISATKTD--GLGNGKVGKQTFLEKHL--PSLPNLGDRQDAFNVYFEWD-ENFGIPE 121 Query: 404 AIIV 415 A + Sbjct: 122 AFYI 125
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 61.2 bits (147), Expect = 9e-10 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 13/117 (11%) Frame = +2 Query: 104 GPRGAHLKGSVVLMRKNALDFND-------------FGATVMDGVTELLGRGVTCQLISS 244 G +G +KG++V+M+KN LD N F + +D +T ++ QLIS+ Sbjct: 5 GQKGQKIKGTMVVMQKNVLDINSITSVGGIVDQGLGFIGSAVDALT-FAATKISIQLISA 63 Query: 245 TNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIV 415 T D GG+GK+G NL + LP + GE + V F+W D G+PGA + Sbjct: 64 TKAD---GGKGKIGKSTNLRGKI---TLPTLGAGEQAYDVNFEWDSD-FGIPGAFYI 113
>YAI7_SCHPO (Q09894) Hypothetical protein C24B11.07c in chromosome I| Length = 561 Score = 37.4 bits (85), Expect = 0.014 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%) Frame = -1 Query: 318 GRSHCSRFASAPTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMR 139 G+ + R SAP+ + + + ++++S RS +PS+ +SLKS R Sbjct: 374 GKPNMGRIPSAPSLSKGRAMTADNMDMLSLTTRRSRRSLYSPSLMQMQQSLKSDYEGLGR 433 Query: 138 TTEPLRWAPRG-PPVR 94 T +P R+APRG PPVR Sbjct: 434 TFDP-RFAPRGSPPVR 448
>MEGF9_MOUSE (Q8BH27) Multiple epidermal growth factor-like domains 9 precursor| (EGF-like domain-containing protein 5) (Multiple EGF-like domain protein 5) Length = 600 Score = 31.6 bits (70), Expect = 0.78 Identities = 21/70 (30%), Positives = 30/70 (42%) Frame = -1 Query: 309 HCSRFASAPTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTE 130 H S P+ P P L ST+ + + V ++S TP A +SS + T Sbjct: 128 HTPTTESPPSRPAPTTLASTVGQPPTTSVVTTAQASSTPGTPTAESPDRSSNSSGVPPTA 187 Query: 129 PLRWAPRGPP 100 P+ AP PP Sbjct: 188 PVTEAPTSPP 197
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 30.8 bits (68), Expect = 1.3 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 1/114 (0%) Frame = +2 Query: 77 GGIVSDLTGGPRGAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNVD 256 GG + P L+ ++ + RK D + A +D + +++GR V +LIS+ Sbjct: 65 GGGAGERRPAPEKVALRAALTVRRKQKEDIKEAVAGHLDALWDMVGRNVVLELISTK--I 122 Query: 257 HNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVD-KLGVPGAIIV 415 H + +++ W G++ T +++VD G PGAI V Sbjct: 123 HPRTKKPMQSGRVSIKDWCQKRG----AKGDH-VVYTAEFTVDADFGEPGAIAV 171
>JHD3_CAEEL (Q9U297) JmjC domain-containing histone demethylation protein 3 (EC| 1.14.11.-) (ceJMJD2) Length = 894 Score = 30.8 bits (68), Expect = 1.3 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 3/82 (3%) Frame = +2 Query: 86 VSDLTGGPRGAHLKGSVVLMRKN---ALDFNDFGATVMDGVTELLGRGVTCQLISSTNVD 256 V D+ P+ +G++V K +DF D + + V ++ ++C+ + N D Sbjct: 808 VEDVVEPPQKLFTRGAIVRADKKETVVVDFLDNSCSRDNHVEDI----ISCECLFCENGD 863 Query: 257 HNNGGRGKVGAEANLEQWLLPT 322 H G R + E++ LPT Sbjct: 864 HQYGARVSISCNKKFEKFELPT 885
>IWS1A_XENLA (Q6DE96) IWS1-like protein A| Length = 836 Score = 30.0 bits (66), Expect = 2.3 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%) Frame = -3 Query: 187 DGGAEVVEVERVLAHEDDGALEVGAPGAPRQVAH----DAADAKH 65 DGGA V+ ER A +D+G + PG+P + D D KH Sbjct: 13 DGGATPVQDERDSASDDEGNEQRSEPGSPEHQSEDEHSDVEDHKH 57
>USH1C_MOUSE (Q9ES64) Harmonin (Usher syndrome type-1C protein homolog) (PDZ| domain-containing protein) Length = 910 Score = 30.0 bits (66), Expect = 2.3 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = -1 Query: 225 VTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRGPPVRSLTMPPTPNI 64 V P P S +PS AP L SS + ++ W R PP + +PP P+I Sbjct: 563 VMPHPPSVNSPSKVPAPPVLPSSGHVSSSSSP---WVQRTPP--PIPIPPPPSI 611
>PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate proteoglycan core| protein precursor (HSPG) (Perlecan) (PLC) Length = 3707 Score = 30.0 bits (66), Expect = 2.3 Identities = 17/61 (27%), Positives = 27/61 (44%) Frame = -1 Query: 408 MAPGTPSLSTDQSKVTANLFSPVVMNGRFVGRSHCSRFASAPTFPRPPLLWSTLVELMSW 229 +APGTP + ++S++T + HCS + P P + WS L + W Sbjct: 2528 VAPGTPQVQVEESELT--------LEAGHTATLHCSATGNPP----PTIHWSKLRAPLPW 2575 Query: 228 Q 226 Q Sbjct: 2576 Q 2576
>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c| precursor Length = 943 Score = 30.0 bits (66), Expect = 2.3 Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 2/82 (2%) Frame = +2 Query: 107 PRGAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGV--TCQLISSTNVDHNNGGRGK 280 P G+ +GSVV G GVTE+ T ++I+ST G G Sbjct: 683 PTGSSSQGSVVPTTSTGSSVTSTGTGTTTGVTEVTETSTFETTEIITSTIEPTTASGTGG 742 Query: 281 VGAEANLEQWLLPTNLPFITTG 346 A PTN P +TTG Sbjct: 743 GNPTA------APTNEPTVTTG 758
>NPAS3_HUMAN (Q8IXF0) Neuronal PAS domain protein 3 (Neuronal PAS3) (Member of| PAS protein 6) (MOP6) Length = 933 Score = 29.6 bits (65), Expect = 2.9 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -1 Query: 222 TPRPRSSVTPSMTVAPKSLKSSAFLRMRTT 133 TP P S +PS+ +L+ S F+RM++T Sbjct: 241 TPEPVESTSPSLLTTDNTLERSFFIRMKST 270
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 29.6 bits (65), Expect = 2.9 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%) Frame = -1 Query: 282 TFPRPPLLWSTLVELMSWQVTPRPRSSVT----PSMTVAPKSLKSSAFLRMRTTEPLRWA 115 T P PP + +T + TP P ++ T P+ T +P + TT P Sbjct: 1584 TTPSPPTITTTTPPPTT---TPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTT 1640 Query: 114 PRGPPVRSLTMPPT 73 P PP + T PPT Sbjct: 1641 PSPPPTTTTTPPPT 1654 Score = 29.6 bits (65), Expect = 2.9 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Frame = -1 Query: 282 TFPRPPLLWSTLVELMSWQVTPRPRSSVT--PSMTVAPKSLKSSAFLRMRTTEPLRWAPR 109 T P PP M+ +TP P S+ T P+ T +P + ++ T P P Sbjct: 1498 TTPSPP---------MTTPITP-PASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPI 1547 Query: 108 GPPVRSLTMPPT 73 PP + T+PPT Sbjct: 1548 TPPTSTTTLPPT 1559 Score = 28.9 bits (63), Expect = 5.0 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Frame = -1 Query: 282 TFPRPPLLWSTLVELMSWQVTPRPRSSVT--PSMTVAPKSLKSSAFLRMRTTEPLRWAPR 109 T P PP+ +T + TP P ++ P+ T +P + ++ T P P Sbjct: 1452 TTPSPPISTTTTPPPTT---TPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPMTTPI 1508 Query: 108 GPPVRSLTMPPT 73 PP + T+PPT Sbjct: 1509 TPPASTTTLPPT 1520
>TRPM2_HUMAN (O94759) Transient receptor potential cation channel subfamily M| member 2 (EC 3.6.1.13) (Long transient receptor potential channel 2) (LTrpC2) (LTrpC-2) (Transient receptor potential channel 7) (TrpC7) (Estrogen-responsive element-associated Length = 1503 Score = 29.6 bits (65), Expect = 2.9 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = +2 Query: 140 LMRKNALDFNDFGATVMDGVTELLGRGVTCQLISST 247 LM+K AL F+DF + G L G+TC+LI +T Sbjct: 856 LMKKAALYFSDFWNKLDVGAILLFVAGLTCRLIPAT 891
>PROML_BRARE (Q9W735) Prominin-like protein (Fragment)| Length = 713 Score = 29.3 bits (64), Expect = 3.8 Identities = 21/83 (25%), Positives = 36/83 (43%) Frame = +2 Query: 146 RKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTN 325 RKNA F DF T++ T ++ GV C ++ N+ G + L+ +N Sbjct: 144 RKNADCFEDFLTTLLLTTTFIITAGVLCAYAANQNLSSQLKGMRR----------LVKSN 193 Query: 326 LPFITTGENKFAVTFDWSVDKLG 394 L + T N+ D+ + + G Sbjct: 194 LKDLHTFANQTPAQIDYLISRYG 216
>GLGC_ERWCT (Q6CZK2) Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)| (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (ADPGlc PPase) Length = 425 Score = 28.9 bits (63), Expect = 5.0 Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 8/93 (8%) Frame = +2 Query: 86 VSDLTGGPRGAHLKGSVVLMRKNALDFN------DFGAT--VMDGVTELLGRGVTCQLIS 241 V+ + G RG LKG L K A+ F DF + + G+ + GV Q S Sbjct: 21 VALILAGGRGTRLKGLTALRAKPAVHFGGKFRIIDFALSNCLNSGIRRI---GVITQYQS 77 Query: 242 STNVDHNNGGRGKVGAEANLEQWLLPTNLPFIT 340 T V H G + AE N LLP + T Sbjct: 78 HTLVQHIQRGWSFLNAEMNEFVDLLPAQQRYST 110
>Y091_NPVOP (O10341) Hypothetical 29.3 kDa protein (ORF92)| Length = 279 Score = 28.9 bits (63), Expect = 5.0 Identities = 19/51 (37%), Positives = 20/51 (39%) Frame = -1 Query: 222 TPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRGPPVRSLTMPPTP 70 TP P S TPS T P S T P P P S T PP+P Sbjct: 136 TPSPTPSPTPSPTPTPSPTPSPTPTPSPTPSP---TPTPSPTPSPTPPPSP 183 Score = 28.1 bits (61), Expect = 8.6 Identities = 24/73 (32%), Positives = 25/73 (34%) Frame = -1 Query: 285 PTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRG 106 P P TL S TP P S TPS T P S T P P Sbjct: 75 PALSPTPTPSPTLSPTPSPTPTPSPTPSPTPSPTPTPSPTPSPTPTPSPTPSPTP-TPSP 133 Query: 105 PPVRSLTMPPTPN 67 P S T PTP+ Sbjct: 134 TPTPSPTPSPTPS 146
>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1| Length = 2173 Score = 28.9 bits (63), Expect = 5.0 Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 13/87 (14%) Frame = -1 Query: 285 PTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMT-------------VAPKSLKSSAFLR 145 PT P P ST +TP+P S T T +AP+ S++ + Sbjct: 1616 PTAPEPHPTTST-----DQPITPKPTSRATRGRTNRSSVKTPELIVPIAPEFHPSTSRSQ 1670 Query: 144 MRTTEPLRWAPRGPPVRSLTMPPTPNI 64 + T EP A RG RS P P + Sbjct: 1671 LVTPEPTSRATRGRKNRSSVKTPEPAV 1697
>FTSK_STRCO (O86810) DNA translocase ftsK| Length = 917 Score = 28.5 bits (62), Expect = 6.6 Identities = 19/62 (30%), Positives = 26/62 (41%) Frame = -1 Query: 255 STLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRGPPVRSLTMPP 76 S LV ++ V+ R S TP+ T P + L+ T+ P G V LT P Sbjct: 349 SPLVADLTQGVSTGDRESTTPTPTPVPAARPQPGKLKKDATKAAGGEPAGGAVPDLTKTP 408 Query: 75 TP 70 P Sbjct: 409 LP 410
>MCM3A_MOUSE (Q9WUU9) 80 kda MCM3-associated protein (GANP protein)| Length = 1971 Score = 28.5 bits (62), Expect = 6.6 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -1 Query: 219 PRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRGPPVRS 91 P P SS TP++ V P + ++ L +T+P P+ PV S Sbjct: 1026 PPPASSATPALHVQPLAPAAAPSLLQASTQPEVLLPKPAPVYS 1068
>TLP_PRUAV (P50694) Thaumatin-like protein precursor| Length = 245 Score = 28.5 bits (62), Expect = 6.6 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 10/51 (19%) Frame = -1 Query: 411 MMAPGT------PSLSTD----QSKVTANLFSPVVMNGRFVGRSHCSRFAS 289 M+ PGT P LST S+ + L +PV NGRF R+ CS AS Sbjct: 35 MVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTDAS 85
>NPAS3_MOUSE (Q9QZQ0) Neuronal PAS domain protein 3 (Neuronal PAS3) (Member of| PAS protein 6) (MOP6) Length = 925 Score = 28.5 bits (62), Expect = 6.6 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -1 Query: 222 TPRPRSSVTPSMTVAPKSLKSSAFLRMRTT 133 TP P + +PS+ +L+ S F+RM++T Sbjct: 246 TPEPVETTSPSLLTTDNTLERSFFIRMKST 275
>Y11K_STRFR (P26800) Hypothetical 11.4 kDa protein (ORF1)| Length = 99 Score = 28.5 bits (62), Expect = 6.6 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 10/65 (15%) Frame = -1 Query: 270 PPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAF----------LRMRTTEPLR 121 P +W+ + +W R+ VTPS AP++ + A+ R R+TEP Sbjct: 31 PVKVWARTLPSAAWDPVGSVRTQVTPS-RAAPRTCQPPAWSSRRRGRPRSSRARSTEP-A 88 Query: 120 WAPRG 106 W+P G Sbjct: 89 WSPEG 93
>CI079_HUMAN (Q6ZUB1) Protein C9orf79| Length = 1445 Score = 28.5 bits (62), Expect = 6.6 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Frame = -1 Query: 243 ELMSWQVTPRPR-SSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRGPPVRS--LTMPPT 73 E + W + RP+ V PS+ +++ S + P W+P+ P+ +T P Sbjct: 565 EYLEWPLKKRPKWKRVLPSLLKKSQAVLSQPTAHLPQERPASWSPKSAPILPGVVTSPEL 624 Query: 72 P 70 P Sbjct: 625 P 625
>YDC9_SCHPO (Q10172) Hypothetical protein C25G10.09c in chromosome I| Length = 1794 Score = 28.5 bits (62), Expect = 6.6 Identities = 22/74 (29%), Positives = 30/74 (40%) Frame = -1 Query: 288 APTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPR 109 AP PP + + V M V +P SSV P+ T +L S P AP+ Sbjct: 1480 APVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPA-TAPSSTLPPSQSSFAHVPSPAPPAPQ 1538 Query: 108 GPPVRSLTMPPTPN 67 P +L+ P N Sbjct: 1539 HPSAAALSSAPADN 1552
>SIPD_SALTY (Q56026) Cell invasion protein sipD (Salmonella invasion protein D)| Length = 343 Score = 28.5 bits (62), Expect = 6.6 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 11/69 (15%) Frame = +2 Query: 230 QLISSTNVDHNNGGRG-KVGAEANLEQWLLPTNLP--FITTGENKFAVTFDWS------- 379 Q+ S+T + G G KV EA QWL NLP + + + + VT D + Sbjct: 207 QINSNTVLFPAQSGSGVKVATEAEARQWLSELNLPNSCLKSYGSGYVVTVDLTPLQKMVQ 266 Query: 380 -VDKLGVPG 403 +D LG PG Sbjct: 267 DIDGLGAPG 275
>PEPP2_HUMAN (Q9BQY4) Paired-like homeobox protein PEPP-2 (Testis homeobox gene| 1) Length = 288 Score = 28.5 bits (62), Expect = 6.6 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Frame = -1 Query: 417 LTMMAPGTPSLSTDQSKVTANLFSPVVMNGRFVGRSHCSRFA-SAPTFPRPPL 262 L MA G P + T +TA LF + + F SH S P FP P L Sbjct: 202 LPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSSSLCFPMPPFPPPSL 254
>TLP2_PRUPE (P83335) Thaumatin-like protein 2 precursor (PpAZ8)| Length = 242 Score = 28.1 bits (61), Expect = 8.6 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%) Frame = -1 Query: 399 GTPSLSTD----QSKVTANLFSPVVMNGRFVGRSHCSRFAS 289 G P LST S+ + L +PV +GRF R+ CS AS Sbjct: 42 GNPQLSTTGFELASQASFQLDTPVPWSGRFWARTRCSTDAS 82
>UL14_EHV1V (P84404) Hypothetical gene 48 protein| Length = 317 Score = 28.1 bits (61), Expect = 8.6 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Frame = -3 Query: 184 GGAEVVEVERVLAHEDDGAL-EVGAPGAPRQVAHDAADAKHLRSISGECGTLAKLARCGA 8 GG EV + + L HED+ L APR AAD RS + ARCGA Sbjct: 132 GGGEVGDPQEWLGHEDEALLMRWMLEEAPRVSTRIAADPHSPRSTCPAPRKAPEDARCGA 191
>UL14_EHV1B (P28949) Hypothetical gene 48 protein| Length = 317 Score = 28.1 bits (61), Expect = 8.6 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Frame = -3 Query: 184 GGAEVVEVERVLAHEDDGAL-EVGAPGAPRQVAHDAADAKHLRSISGECGTLAKLARCGA 8 GG EV + + L HED+ L APR AAD RS + ARCGA Sbjct: 132 GGGEVGDPQEWLGHEDEALLMRWMLEEAPRVSTRIAADPHSPRSTCPAPRKAPEDARCGA 191
>GLTB_MAIZE (P23225) Ferredoxin-dependent glutamate synthase, chloroplast| precursor (EC 1.4.7.1) (Fd-GOGAT) Length = 1616 Score = 28.1 bits (61), Expect = 8.6 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -3 Query: 115 APGAPRQVAHDAADAKHLRSISGECG 38 AP AP++ AAD H+ S G CG Sbjct: 74 APPAPQKPTQQAADLNHILSERGACG 99
>SYH_BURMA (Q62JW5) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 446 Score = 28.1 bits (61), Expect = 8.6 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 6/43 (13%) Frame = +2 Query: 299 LEQWLLPTNLPF-----ITTGENKFAVT-FDWSVDKLGVPGAI 409 L+Q L NLPF + G + + +T F+W DKLG G + Sbjct: 246 LQQLLKANNLPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTV 288
>MILK1_MOUSE (Q8BGT6) Molecule interacting with Rab13 (MIRab13) (MICAL-like| protein 1) Length = 870 Score = 28.1 bits (61), Expect = 8.6 Identities = 20/47 (42%), Positives = 23/47 (48%) Frame = -1 Query: 222 TPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRGPPVRSLTM 82 TPRPRSS+ TV + SS + R EP PRG P S M Sbjct: 314 TPRPRSSLQQDGTV--EQSVSSGLVNGRLQEPPVPKPRGTPKLSERM 358
>PCD15_MOUSE (Q99PJ1) Protocadherin-15 precursor| Length = 1943 Score = 28.1 bits (61), Expect = 8.6 Identities = 23/74 (31%), Positives = 33/74 (44%) Frame = -1 Query: 285 PTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRG 106 P PRPP+ ++T +S P P VT S+ P S ++ L + L PR Sbjct: 1754 PPLPRPPIAFTTFPLPLS-PPNPPPPQLVTFSL---PISTPPTSSLPLPPPLSLPPPPRP 1809 Query: 105 PPVRSLTMPPTPNI 64 P R PP+ +I Sbjct: 1810 PAPRLFPQPPSTSI 1823
>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1| Length = 2042 Score = 28.1 bits (61), Expect = 8.6 Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 12/97 (12%) Frame = -1 Query: 318 GRSHCSRFAS----APTFPRP----PLLWSTLVELMSWQVTPRPRSSVT----PSMTVAP 175 GR+H S + PT P P P EL S R R S P + P Sbjct: 1409 GRTHRSSIKTPEPVVPTDPEPQPSTPTDQPITPELTSAATRGRTRRSSVKTPEPVVPTDP 1468 Query: 174 KSLKSSAFLRMRTTEPLRWAPRGPPVRSLTMPPTPNI 64 + S+ + T +P WA RG RS P P++ Sbjct: 1469 EPQPSTPTDQPITPKPTSWATRGQAHRSSVKTPEPHV 1505
>HUNB_DROIK (O46242) Protein hunchback (Fragments)| Length = 193 Score = 28.1 bits (61), Expect = 8.6 Identities = 17/68 (25%), Positives = 34/68 (50%) Frame = -1 Query: 273 RPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRGPPVR 94 RPP L + + +M + P P ++ T + T A S ++A + +++ + L+ P Sbjct: 101 RPPGLPNPMQTIMPANMRPSPTATTTATTTAAAASTTTAATVALQSNDKLQAL---TPPM 157 Query: 93 SLTMPPTP 70 +T P +P Sbjct: 158 DVTPPKSP 165
>MMP9_HUMAN (P14780) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)| (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase) (Gelatinase B) (GELB) [Contains: 67 kDa matrix metalloproteinase-9; 82 kDa matrix metalloproteinase-9] Length = 707 Score = 28.1 bits (61), Expect = 8.6 Identities = 17/49 (34%), Positives = 24/49 (48%) Frame = -1 Query: 219 PRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRGPPVRSLTMPPT 73 PRP ++ TP T AP ++ + + +E P GPP T PPT Sbjct: 451 PRPPTTTTPQPT-APPTVCPTGPPTVHPSERPTAGPTGPPSAGPTGPPT 498 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,745,795 Number of Sequences: 219361 Number of extensions: 831775 Number of successful extensions: 3517 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 3340 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3480 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
