Clone Information

BLAST Search Result

Clone Name	bastl16f07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif p...	47	1e-05
2	RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif p...	47	1e-05
3	MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing prote...	35	0.036
4	CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit...	34	0.11
5	CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit...	34	0.11
6	CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit...	34	0.11
7	CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit...	34	0.11
8	RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-bindin...	33	0.14
9	RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U...	33	0.23
10	HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)	32	0.31
11	PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppres...	32	0.40
12	CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcrip...	32	0.52
13	CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit...	31	0.89
14	CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit...	31	0.89
15	NIA_VOLCA (P36841) Nitrate reductase [NADH] (EC 1.7.1.1) (NR)	30	1.2
16	FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing ...	30	1.5
17	SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)	30	1.5
18	RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-bindin...	30	1.5
19	RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U...	30	2.0
20	ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor	30	2.0
21	RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U...	30	2.0
22	RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Co...	29	2.6
23	RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (He...	29	2.6
24	RAVR2_HUMAN (Q9HCJ3) Protein raver-2	29	3.4
25	TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)	29	3.4
26	TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding p...	29	3.4
27	PPIL4_MOUSE (Q9CXG3) Peptidyl-prolyl cis-trans isomerase-like 4 ...	29	3.4
28	PPIL4_HUMAN (Q8WUA2) Peptidyl-prolyl cis-trans isomerase-like 4 ...	29	3.4
29	GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein ...	29	3.4
30	RALY_MOUSE (Q64012) RNA-binding protein Raly (hnRNP associated w...	29	3.4
31	HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (...	28	4.4
32	RSP31_ARATH (P92964) Arginine/serine-rich splicing factor RSP31	28	4.4
33	MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musa...	28	4.4
34	RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U...	28	4.4
35	RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U...	28	4.4
36	RALY_HUMAN (Q9UKM9) RNA-binding protein Raly (hnRNP associated w...	28	4.4
37	MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musa...	28	4.4
38	HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hn...	28	4.4
39	HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (...	28	4.4
40	RSD1_SCHPO (O13845) RNA-binding protein rsd1	28	5.8
41	RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif pro...	28	5.8
42	RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif p...	28	5.8
43	YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in c...	28	5.8
44	RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif pro...	28	5.8
45	ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)	28	5.8
46	PM14_MOUSE (P59708) Pre-mRNA branch site protein p14 (SF3B 14 kD...	28	7.5
47	PM14_HUMAN (Q9Y3B4) Pre-mRNA branch site protein p14 (SF3B 14 kD...	28	7.5
48	A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1	28	7.5
49	A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1	28	7.5
50	RAVR2_MOUSE (Q7TPD6) Protein raver-2	28	7.5
51	RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif p...	28	7.5
52	RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-bindin...	28	7.5
53	RNP24_SCHPO (Q09100) RNA-binding protein rnp24	28	7.5
54	TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)	27	9.9
55	MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)	27	9.9
56	MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)	27	9.9
57	TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)	27	9.9
58	PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 ...	27	9.9
59	HNRCL_HUMAN (O60812) Heterogeneous nuclear ribonucleoprotein C-l...	27	9.9

>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 758

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 20/38 (52%), Positives = 29/38 (76%)
 Frame = +2

Query: 200 TVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASKGSE 313
           T+FV  LP + +S  LE +FS+VGPV++CF+V  KGS+
Sbjct: 4   TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSK 41

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>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 749

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 20/38 (52%), Positives = 29/38 (76%)
 Frame = +2

Query: 200 TVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASKGSE 313
           T+FV  LP + +S  LE +FS+VGPV++CF+V  KGS+
Sbjct: 4   TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSK 41

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>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1|
          Length = 825

 Score = 35.4 bits (80), Expect = 0.036
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +2

Query: 197 STVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASKGSETS 319
           S +FV NLPY    SDLE VFS+ G +    +     S TS
Sbjct: 301 SRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTS 341

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>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 572

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 200 TVFVSNLPYTYKSSDLETVFSEVGPV 277
           +VFV N+PY      L+ +FSEVGPV
Sbjct: 17  SVFVGNIPYEATEEQLKDIFSEVGPV 42

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>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 580

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 200 TVFVSNLPYTYKSSDLETVFSEVGPV 277
           +VFV N+PY      L+ +FSEVGPV
Sbjct: 17  SVFVGNIPYEATEEQLKDIFSEVGPV 42

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>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 200 TVFVSNLPYTYKSSDLETVFSEVGPV 277
           +VFV N+PY      L+ +FSEVGPV
Sbjct: 17  SVFVGNIPYEATEEQLKDIFSEVGPV 42

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>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 200 TVFVSNLPYTYKSSDLETVFSEVGPV 277
           +VFV N+PY      L+ +FSEVGPV
Sbjct: 17  SVFVGNIPYEATEEQLKDIFSEVGPV 42

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>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 960

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +2

Query: 203 VFVSNLPYTYKSSDLETVFSEVGPV 277
           +FV NLPYT    DLE +FS+ GP+
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPL 428



 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 200 TVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASK 304
           T+F+ NL +      L+ VFS+VG V+ C +   K
Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKK 765

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>RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 471

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 200 TVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASKGSETS 319
           T+FV+ + Y    S L   F   GP++R  +V +KGSE S
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHIVYNKGSEGS 143

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>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)|
          Length = 429

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 197 STVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASKG 307
           +++FV NL Y     DL   FS++G V R  ++ S+G
Sbjct: 136 NSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSRG 172



 Score = 27.7 bits (60), Expect = 7.5
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 203 VFVSNLPYTYKSSDLETVFSEVGPVRRC-FMVASKGSET 316
           ++ SNLP++   SDL  +F  +G V        SKG+ T
Sbjct: 353 IYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPT 391

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>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)|
          Length = 611

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 191 SPSTVFVSNLPYTYKSSDLETVFSEVGPVRRCFM 292
           S +++F+ NLP      D+   FSEVGP++  ++
Sbjct: 301 SQNSIFIKNLPTITTRDDILNFFSEVGPIKSIYL 334

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>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription|
           termination factor ctf1)
          Length = 363

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 197 STVFVSNLPYTYKSSDLETVFSEVGPVR 280
           + VFV N+PY      +  +F++VGPV+
Sbjct: 7   NVVFVGNIPYDVSEQQMTEIFNQVGPVK 34

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>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 632

 Score = 30.8 bits (68), Expect = 0.89
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 200 TVFVSNLPYTYKSSDLETVFSEVGPV 277
           +VFV N+PY      L+ +FSEVG V
Sbjct: 17  SVFVGNIPYEATEEQLKDIFSEVGSV 42

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>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 616

 Score = 30.8 bits (68), Expect = 0.89
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 200 TVFVSNLPYTYKSSDLETVFSEVGPV 277
           +VFV N+PY      L+ +FSEVG V
Sbjct: 17  SVFVGNIPYEATEEQLKDIFSEVGSV 42

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>NIA_VOLCA (P36841) Nitrate reductase [NADH] (EC 1.7.1.1) (NR)|
          Length = 864

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = -3

Query: 304 FRRDHEAAPHRPDLAEHRLEIGGLV 230
           F R+H AAP  P  AEHR+EI GLV
Sbjct: 91  FVRNHGAAPRIP-WAEHRIEINGLV 114

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>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X|
           protein 1)
          Length = 415

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 194 PSTVFVSNLPYTYKSSDLETVFSEVGPV 277
           P  + VSN+P+ ++  DL+T+F + G V
Sbjct: 152 PKRLHVSNIPFRFRDPDLKTMFEKFGVV 179

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>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)|
          Length = 303

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 191 SPSTVFVSNLPYTYKSSDLETVFSEVGPV 277
           S  TV+V NLP   +  ++E +FS+ GPV
Sbjct: 5   SSRTVYVGNLPGDIREREVEDLFSKYGPV 33

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>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 952

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 203 VFVSNLPYTYKSSDLETVFSEVGPV 277
           +FV NL YT    DLE +FS  GP+
Sbjct: 402 LFVRNLSYTSSEEDLEKLFSAYGPL 426



 Score = 29.3 bits (64), Expect = 2.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 200 TVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASK 304
           T+F+ NL ++     L+ VFS+VG ++ C +   K
Sbjct: 723 TLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKK 757

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>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 437

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 200 TVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASKGS 310
           T+FV+ + Y    S L   F   GP++R  MV SK S
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRS 140

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>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor|
          Length = 324

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 203 VFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASKGSETS 319
           ++V NLP++  SS L  +F+E G V    +V  + ++ S
Sbjct: 116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRS 154

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>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70|
           kDa) (snRNP70)
          Length = 448

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 200 TVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASKGS 310
           T+FV+ + Y    S L   F   GP++R  MV SK S
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRS 140

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>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of|
           activating protein 1 and estrogen receptors)
           (Coactivator of AP-1 and ERs) (Transcription coactivator
           CAPER)
          Length = 530

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 200 TVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASKGSETS 319
           TVF   L    +  DLE  FS VG VR   M++ + S  S
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRS 193

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>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular|
           carcinoma protein 1) (Splicing factor HCC1)
          Length = 530

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 200 TVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASKGSETS 319
           TVF   L    +  DLE  FS VG VR   M++ + S  S
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRS 193

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>RAVR2_HUMAN (Q9HCJ3) Protein raver-2|
          Length = 691

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 209 VSNLPYTYKSSDLETVFSEVGPVRRCFMVASK 304
           ++N+P ++ S + E +    G + RCF+V S+
Sbjct: 146 ITNVPISFTSEEFEELVRAYGNIERCFLVYSE 177

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>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)|
          Length = 386

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 194 PSTVFVSNLPYTYKSSDLETVFSEVGPVRRCFMV 295
           P T++V NL      + +  +FS++GP + C M+
Sbjct: 6   PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMI 39

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>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)|
           (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15
           (p15-TIA-1)]
          Length = 386

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 194 PSTVFVSNLPYTYKSSDLETVFSEVGPVRRCFMV 295
           P T++V NL      + +  +FS++GP + C M+
Sbjct: 6   PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMI 39

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>PPIL4_MOUSE (Q9CXG3) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4)
          Length = 492

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 197 STVFVSNLPYTYKSSDLETVFSEVGPVRRCFMV 295
           + +FV  L       DLE +FS  GP+R C ++
Sbjct: 240 NVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVI 272

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>PPIL4_HUMAN (Q8WUA2) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4)
          Length = 492

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 197 STVFVSNLPYTYKSSDLETVFSEVGPVRRCFMV 295
           + +FV  L       DLE +FS  GP+R C ++
Sbjct: 240 NVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVI 272

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>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2|
           (G-strand-binding protein 2) (RAP1 localization factor
           6)
          Length = 427

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 197 STVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASKG 307
           +++FV NL +     DL+ +F  VG V    ++ SKG
Sbjct: 122 NSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSKG 158

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>RALY_MOUSE (Q64012) RNA-binding protein Raly (hnRNP associated with lethal|
           yellow protein) (Maternally expressed hnRNP C-related
           protein)
          Length = 312

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 197 STVFVSNL-PYTYKSSDLETVFSEVGPVRRC 286
           S VF+ NL     K SD+ET+FS+ G V  C
Sbjct: 21  SRVFIGNLNTAVVKKSDVETIFSKYGRVAGC 51

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>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)|
          Length = 729

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 197 STVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASKGSET 316
           STVFV+NL Y      L+ VFS  G V R  ++  K  ++
Sbjct: 203 STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKS 242

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>RSP31_ARATH (P92964) Arginine/serine-rich splicing factor RSP31|
          Length = 264

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 203 VFVSNLPYTYKSSDLETVFSEVGPVRRCFM 292
           VFV N  Y  + SDLE +F + G V R  M
Sbjct: 4   VFVGNFEYETRQSDLERLFDKYGRVDRVDM 33

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>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 346

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +2

Query: 188 HSPSTVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASKGSETS 319
           H P  +F+  L +      L   FS+ G +R C ++    ++ S
Sbjct: 18  HDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRS 61

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>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 471

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 200 TVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASKGS 310
           T+FV+ + Y    S L   F   GP++R  MV +K S
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRS 140

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>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 427

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 200 TVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASK 304
           T+FVS L Y    S ++  F   GP++R  +V  +
Sbjct: 139 TLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQ 173

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>RALY_HUMAN (Q9UKM9) RNA-binding protein Raly (hnRNP associated with lethal|
           yellow homolog) (Autoantigen p542)
          Length = 306

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 197 STVFVSNLPYTY-KSSDLETVFSEVGPVRRC 286
           S VF+ NL     K SD+ET+FS+ G V  C
Sbjct: 21  SRVFIGNLNTALVKKSDVETIFSKYGRVAGC 51

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>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 328

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +2

Query: 188 HSPSTVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASKGSETS 319
           H P  +F+  L +      L   FS+ G +R C ++    ++ S
Sbjct: 18  HDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRS 61

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>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4|
           protein)
          Length = 689

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 197 STVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASKGSET 316
           STVFV+NL Y      L+ VFS  G V R  ++  K  ++
Sbjct: 163 STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKS 202

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>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)|
          Length = 728

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 197 STVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASKGSET 316
           STVFV+NL Y      L+ VFS  G V R  ++  K  ++
Sbjct: 202 STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKS 241

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>RSD1_SCHPO (O13845) RNA-binding protein rsd1|
          Length = 604

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +2

Query: 200 TVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASKGSETS 319
           TVFVS L     S +L   F + GPVR   +V  K S  S
Sbjct: 241 TVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRS 280

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>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 428

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 200 TVFVSNLPYTYKSSDLETVFSEVGPV 277
           TVFV NLP T     L++ F E G V
Sbjct: 184 TVFVGNLPVTCNKKKLKSFFKEYGQV 209

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>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 375

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 200 TVFVSNLPYTYKSSDLETVFSEVGPV 277
           TVFV NLP T     L++ F E G V
Sbjct: 190 TVFVGNLPVTCNKKKLKSFFKEYGQV 215

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>YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in chromosome III|
          Length = 654

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 203 VFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASK 304
           VF+ NLP +Y   ++E  F + G +    +++ K
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKK 334

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>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)|
           (Hexaribonucleotide-binding protein 2) (Repressor of
           tamoxifen transcriptional activity)
          Length = 390

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 191 SPSTVFVSNLPYTYKSSDLETVFSEVGPV 277
           +P  + VSN+P+ ++  DL  +F + G +
Sbjct: 119 TPKRLHVSNIPFRFRDPDLRQMFGQFGKI 147

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>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)|
          Length = 233

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 203 VFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASK 304
           V+V NLP+   +S LE +FSE G V    +V+ +
Sbjct: 151 VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDR 184

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>PM14_MOUSE (P59708) Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit)|
          Length = 125

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +2

Query: 203 VFVSNLPYTYKSSDLETVFSEVGPVRR 283
           +++ NLPY   + ++  +F + GP+R+
Sbjct: 21  LYIRNLPYKITAEEMYDIFGKYGPIRQ 47

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>PM14_HUMAN (Q9Y3B4) Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit)|
          Length = 125

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +2

Query: 203 VFVSNLPYTYKSSDLETVFSEVGPVRR 283
           +++ NLPY   + ++  +F + GP+R+
Sbjct: 21  LYIRNLPYKITAEEMYDIFGKYGPIRQ 47

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>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1|
          Length = 396

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 194 PSTVFVSNLPYTYKSSDLETVFSEVGPV 277
           P  + VSN+P+ ++  DL  +F + G +
Sbjct: 115 PKRLHVSNIPFRFRDPDLRQMFGQFGKI 142

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>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1|
          Length = 397

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 194 PSTVFVSNLPYTYKSSDLETVFSEVGPV 277
           P  + VSN+P+ ++  DL  +F + G +
Sbjct: 116 PKRLHVSNIPFRFRDPDLRQMFGQFGKI 143

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>RAVR2_MOUSE (Q7TPD6) Protein raver-2|
          Length = 673

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 209 VSNLPYTYKSSDLETVFSEVGPVRRCFMVASK 304
           ++NLP ++   + E +    G + RCF+V S+
Sbjct: 135 ITNLPISFTLEEFEELVRAYGNIERCFLVYSE 166

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>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 430

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 200 TVFVSNLPYTYKSSDLETVFSEVGPV 277
           TVFV NLP T     L++ F E G +
Sbjct: 186 TVFVGNLPVTCNKKKLKSFFKEYGQI 211



 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 200 TVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASK 304
           +VFV NLPY  + S +E  F + G +    +V  K
Sbjct: 288 SVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDK 322

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>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein|
           23) (RNA-binding region-containing protein 4) (Splicing
           factor SF2)
          Length = 439

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 200 TVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASKGSETS 319
           TVF   L    +  DLE  FS VG VR   +++ + S  S
Sbjct: 167 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRS 206

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>RNP24_SCHPO (Q09100) RNA-binding protein rnp24|
          Length = 369

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 197 STVFVSNLPYTYKSSDLETVFSEVGPVRR 283
           S +FV NL +    +DL+  F +VG +RR
Sbjct: 228 SILFVGNLDFETTDADLKEHFGQVGQIRR 256

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>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 375

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 194 PSTVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASKGS 310
           P T++V NL        +  +FS++GP + C M+    S
Sbjct: 8   PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS 46

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>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)|
          Length = 591

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 197 STVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASKGSET 316
           ST+FV+NL +      L+ VFS  G V+R  +   K  ++
Sbjct: 224 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKS 263

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>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)|
          Length = 600

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 197 STVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASKGSET 316
           ST+FV+NL +      L+ VFS  G V+R  +   K  ++
Sbjct: 233 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKS 272

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>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 392

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 194 PSTVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASK 304
           P T++V NL        +  +FS++GP + C M+  +
Sbjct: 8   PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQ 44

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>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 459

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 197 STVFVSNLPYTYKSSDLETVFSEVGPVRRCFMVASK 304
           + +FV  L    +  DL+ +FS  GP+  C ++  K
Sbjct: 248 NVLFVCKLNPVTQDEDLQLIFSRFGPILSCEVIRDK 283

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>HNRCL_HUMAN (O60812) Heterogeneous nuclear ribonucleoprotein C-like 1 (hnRNP|
           core protein C-like 1)
          Length = 293

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 197 STVFVSNL-PYTYKSSDLETVFSEVGPVRRC 286
           S VF+ NL     K SD+E +FS+ G +  C
Sbjct: 16  SRVFIGNLNTLVVKKSDVEAIFSKYGKIAGC 46


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,422,820
Number of Sequences: 219361
Number of extensions: 287460
Number of successful extensions: 1398
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 1323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1398
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result