ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl16f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HYIN1_BRAJA (P59385) Indoleacetamide hydrolase (EC 3.5.1.-) (IAH... 28 4.0
2PHLPP_DROME (Q9VJ07) Protein phosphatase PHLPP-like protein (EC ... 28 5.2
3ICP0_HHV11 (P08393) Trans-acting transcriptional protein ICP0 (I... 28 6.8
4AACC3_ENTCL (P0A256) Aminoglycoside N(3')-acetyltransferase III ... 27 8.9
5AACC2_ACIBA (P29807) Aminoglycoside N(3')-acetyltransferase III ... 27 8.9
6AAC32_SALSP (P0A255) Aminoglycoside N(3')-acetyltransferase III ... 27 8.9
7AAC31_SALSP (P13246) Aminoglycoside N(3')-acetyltransferase III ... 27 8.9

>HYIN1_BRAJA (P59385) Indoleacetamide hydrolase (EC 3.5.1.-) (IAH)|
           (Indole-3-acetamide hydrolase)
          Length = 524

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 227 REPTG*SWAWASLDNGPKERGGAASPLRKAEA 132
           R P G  W W+++D     R GA S +   EA
Sbjct: 51  RRPKGPVWQWSAVDTAAAIRSGAISAVETVEA 82



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>PHLPP_DROME (Q9VJ07) Protein phosphatase PHLPP-like protein (EC 3.1.3.16)|
           (dPHLPP)
          Length = 954

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 100 RLNNPIPRAVPASAFRSGDAAPPLSFGPLSKLAHAHDY 213
           +L  PI  +VP  ++     APP  FG       AH Y
Sbjct: 834 QLPQPITTSVPLGSYHQVKQAPPGHFGSALSFQQAHSY 871



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>ICP0_HHV11 (P08393) Trans-acting transcriptional protein ICP0 (Immediate-early|
           protein IE110) (VMW110) (Alpha-0 protein)
          Length = 775

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 112 PIPRAVPASAFRSGDAAPPLSFGPLSKLAHAHDYPVGSR 228
           P PR  P +  R G AAPP++ G     +HA   P  +R
Sbjct: 247 PAPRRTPRAPPRRGAAAPPVTGG----ASHAAPQPAAAR 281



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>AACC3_ENTCL (P0A256) Aminoglycoside N(3')-acetyltransferase III (EC 2.3.1.81)|
           (ACC(3)-III) (Aminocyclitol 3-N-acetyltransferase type
           III) (Gentamicin-(3)-N-acetyl-transferase)
          Length = 286

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
 Frame = -2

Query: 239 LRRNREPTG*SWAWASLDNGPKER--GGAA---------SPLRKAEAGTARGMGLLRRAL 93
           LR    PTG    +AS D  P E    GA           P   A AGT RG GLL + L
Sbjct: 45  LRSAVGPTGTVMGYASWDRSPYEETLNGARLDDKARRTWPPFDPATAGTYRGFGLLNQFL 104



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>AACC2_ACIBA (P29807) Aminoglycoside N(3')-acetyltransferase III (EC 2.3.1.81)|
           (Gentamicin-(3)-N-acetyl-transferase) (AAC(3)II)
          Length = 286

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
 Frame = -2

Query: 239 LRRNREPTG*SWAWASLDNGPKER--GGAA---------SPLRKAEAGTARGMGLLRRAL 93
           LR    PTG    +AS D  P E    GA           P   A AGT RG GLL + L
Sbjct: 45  LRSAVGPTGTVMGYASWDRSPYEETLNGARLDDKARRTWPPFDPATAGTYRGFGLLNQFL 104



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>AAC32_SALSP (P0A255) Aminoglycoside N(3')-acetyltransferase III (EC 2.3.1.81)|
           (ACC(3)-III) (Aminocyclitol 3-N-acetyltransferase type
           III) (Gentamicin-(3)-N-acetyl-transferase)
          Length = 286

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
 Frame = -2

Query: 239 LRRNREPTG*SWAWASLDNGPKER--GGAA---------SPLRKAEAGTARGMGLLRRAL 93
           LR    PTG    +AS D  P E    GA           P   A AGT RG GLL + L
Sbjct: 45  LRSAVGPTGTVMGYASWDRSPYEETLNGARLDDKARRTWPPFDPATAGTYRGFGLLNQFL 104



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>AAC31_SALSP (P13246) Aminoglycoside N(3')-acetyltransferase III (EC 2.3.1.81)|
           (ACC(3)-III) (Aminocyclitol 3-N-acetyltransferase type
           III) (Gentamicin-(3)-N-acetyl-transferase)
          Length = 286

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
 Frame = -2

Query: 239 LRRNREPTG*SWAWASLDNGPKER--GGAA---------SPLRKAEAGTARGMGLLRRAL 93
           LR    PTG    +AS D  P E    GA           P   A AGT RG GLL + L
Sbjct: 45  LRSAVGPTGTVMGYASWDRSPYEETLNGARLDDNARRTWPPFDPATAGTYRGFGLLNQFL 104


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,972,365
Number of Sequences: 219361
Number of extensions: 351255
Number of successful extensions: 1159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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