>Y1242_PHOLL (Q7N7B3) UPF0255 protein plu1242|
          Length = 415

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 333 RGTWPCAVPHQTRCWPQRQQRAPCVPETA*SSWLELDRRQS*VHHP 196
           +G W     HQ   W QR  +A  +PE + + WL+     S   +P
Sbjct: 94  KGNWVFEWSHQAMLWQQRALQAEQIPEAS-NFWLKAANLYSIAGYP 138

>CCNA1_HUMAN (P78396) Cyclin-A1|
          Length = 465

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 80  GAQPPKSAARSLSRPRGSYQRHAGKGLTR 166
           G  PP+     L    G Y+R  G+G+TR
Sbjct: 75  GQDPPQRTVLGLLTANGQYRRTCGQGITR 103

>MDC1_MOUSE (Q5PSV9) Mediator of DNA damage checkpoint protein 1|
          Length = 1707

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 223  SATELSTSPDCNPPVPISCSC*PLP 149
            SA+ +S++PD  PPVPI+    P P
Sbjct: 1368 SASPVSSTPDLKPPVPIAQPVTPEP 1392

>SYFB_SYNEL (Q8DL37) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 821

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +1

Query: 76  ARSPAAQVGCPLAQPTPRIVPEARREGANKSS*LELVD---CNRVMYLALSPIQLKPA 240
           AR  AA  G PL  PTPR +   ++ GA     L + D   C       ++ +Q+ P+
Sbjct: 177 AREVAALTGAPLTLPTPRAI-APKKSGAKGPVQLAIADPQACPAYCGTLITHVQIAPS 233


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,670,029
Number of Sequences: 219361
Number of extensions: 695010
Number of successful extensions: 2126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2125
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)