Clone Name | bastl16f05 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 77.8 bits (39), Expect = 2e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 290 cagcaccgagtctgatggggcacagcgcatggccaagttcctctgcagcttcggaggcag 349 |||| ||||| ||||||| || | |||||||||||||||||||||||||| ||||| || Sbjct: 33406020 cagcgccgaggctgatggagcccctcgcatggccaagttcctctgcagctttggaggaag 33406079 Query: 350 catccttccccgccc 364 |||||| |||||||| Sbjct: 33406080 catcctgccccgccc 33406094
>dbj|AP004057.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1316_E06 Length = 110197 Score = 77.8 bits (39), Expect = 2e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 290 cagcaccgagtctgatggggcacagcgcatggccaagttcctctgcagcttcggaggcag 349 |||| ||||| ||||||| || | |||||||||||||||||||||||||| ||||| || Sbjct: 36639 cagcgccgaggctgatggagcccctcgcatggccaagttcctctgcagctttggaggaag 36698 Query: 350 catccttccccgccc 364 |||||| |||||||| Sbjct: 36699 catcctgccccgccc 36713
>ref|XM_537001.2| PREDICTED: Canis familiaris similar to CG17065-PA (LOC479876), mRNA Length = 1321 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 75 cgcccggagcccagccgcccaagtcggctgcccgctc 111 ||||||||||||||| ||||||| | ||| ||||||| Sbjct: 60 cgcccggagcccagcagcccaagcccgctacccgctc 24
>ref|XM_613401.2| PREDICTED: Bos taurus similar to phosphatidylinositol transfer protein, membrane-associated (LOC533859), mRNA Length = 4181 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 ggcacagcgcatggccaagt 327 |||||||||||||||||||| Sbjct: 957 ggcacagcgcatggccaagt 976
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 agccgcccaagtcggctgcc 106 |||||||||||||||||||| Sbjct: 3681953 agccgcccaagtcggctgcc 3681972
>ref|XM_748856.1| Aspergillus fumigatus Af293 class V chitinase (Afu5g06840) partial mRNA Length = 3462 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 tagctctgtcgccgatccaa 228 |||||||||||||||||||| Sbjct: 201 tagctctgtcgccgatccaa 220
>emb|BX061226.1|CNS09JEM Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC41DF11 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 943 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 275 tgctgccgctgcggccagcaccga 298 |||||||||||| ||||||||||| Sbjct: 519 tgctgccgctgctgccagcaccga 542
>emb|BX059726.1|CNS09I8Y Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC4DA04 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 778 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 275 tgctgccgctgcggccagcaccga 298 |||||||||||| ||||||||||| Sbjct: 527 tgctgccgctgctgccagcaccga 550
>emb|BX059725.1|CNS09I8X Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC4DA04 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 801 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 275 tgctgccgctgcggccagcaccga 298 |||||||||||| ||||||||||| Sbjct: 695 tgctgccgctgctgccagcaccga 672
>emb|X78384.1|DMADH D.melanogaster Adh and Adh-dup genes Length = 4761 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 gcatggccaagttcctctgc 335 |||||||||||||||||||| Sbjct: 3163 gcatggccaagttcctctgc 3182
>gb|AC106746.2| Homo sapiens chromosome 5 clone RP11-149E17, complete sequence Length = 179868 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 taacaagagcagctgattggaact 182 |||||||||||| ||||||||||| Sbjct: 78599 taacaagagcagttgattggaact 78622
>ref|XM_318701.2| Anopheles gambiae str. PEST ENSANGP00000023724 (ENSANGG00000007791), partial mRNA Length = 1353 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 275 tgctgccgctgcggccagcaccga 298 |||||||||||| ||||||||||| Sbjct: 937 tgctgccgctgctgccagcaccga 914
>ref|XM_318699.2| Anopheles gambiae str. PEST ENSANGP00000010280 (ENSANGG00000007791), partial mRNA Length = 2127 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 275 tgctgccgctgcggccagcaccga 298 |||||||||||| ||||||||||| Sbjct: 754 tgctgccgctgctgccagcaccga 731
>gb|AC004592.1|AC004592 Homo sapiens PAC clone RP1-244J5 from 5q31, complete sequence Length = 130513 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 159 taacaagagcagctgattggaact 182 |||||||||||| ||||||||||| Sbjct: 85151 taacaagagcagttgattggaact 85128
>gb|M19547.1|DROADHCC D.melanogaster (strain Af-S) alcohol dehydrogenase gene (allele Adh-S), complete cds Length = 7119 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 gcatggccaagttcctctgc 335 |||||||||||||||||||| Sbjct: 6691 gcatggccaagttcctctgc 6710 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,124,187 Number of Sequences: 3902068 Number of extensions: 2124187 Number of successful extensions: 37559 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37473 Number of HSP's gapped (non-prelim): 86 length of query: 378 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 356 effective length of database: 17,147,199,772 effective search space: 6104403118832 effective search space used: 6104403118832 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)