>BMS1_SCHPO (O94653) Ribosome biogenesis protein BMS1 homolog|
          Length = 1121

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 20/39 (51%), Positives = 28/39 (71%)
 Frame = +1

Query: 247 NPKAFAFRSATKAKRLQSRSAEIEQRRLHVPIMDRSIGE 363
           NPKAFA  SA +  R   R+A+I Q++LHVP++DR+  E
Sbjct: 32  NPKAFAVASAGRMARQAMRTADISQKKLHVPMVDRTPDE 70

>BMS1_YEAST (Q08965) Ribosome biogenesis protein BMS1|
          Length = 1183

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 23/71 (32%), Positives = 33/71 (46%)
 Frame = +1

Query: 142 VEQPRKAHRVAKSXXXXXXXXXXXXXXXXXXXXXXNPKAFAFRSATKAKRLQSRSAEIEQ 321
           +EQ  K HR AK                       N KAFA  +  K  R   RS+++ +
Sbjct: 1   MEQSNKQHRKAKEKNTAKKKLHTQGH---------NAKAFAVAAPGKMARTMQRSSDVNE 51

Query: 322 RRLHVPIMDRS 354
           R+LHVP++DR+
Sbjct: 52  RKLHVPMVDRT 62

>BMS1_HUMAN (Q14692) Ribosome biogenesis protein BMS1 homolog|
          Length = 1282

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 14/36 (38%), Positives = 26/36 (72%)
 Frame = +1

Query: 247 NPKAFAFRSATKAKRLQSRSAEIEQRRLHVPIMDRS 354
           NPKAFA +SA +  R   R+ +++ ++ H+P++DR+
Sbjct: 41  NPKAFAVQSAVRMARSFHRTQDLKTKKHHIPVVDRT 76

>PRIM_PSEAE (Q9I5W0) DNA primase (EC 2.7.7.-)|
          Length = 664

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -2

Query: 138 GFPRSHGEEDFAEAVLAGFLRRRRGMAAGKEESGGRG 28
           GF   H + +F +AV    L +R GM   +EE GGRG
Sbjct: 72  GFVMDHDQLEFPQAVEE--LAKRAGMDVPREERGGRG 106

>ATRX_MOUSE (Q61687) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent|
            helicase ATRX) (X-linked nuclear protein)
            (Heterochromatin protein 2) (HP1 alpha-interacting
            protein) (HP1-BP38 protein)
          Length = 2476

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = +1

Query: 82   KPR-EHRLRKILLTMAPGEAGVEQPR--KAHRVAK 177
            KPR  HRL +  LT++ GE+G E+P   K H+ AK
Sbjct: 1320 KPRYRHRLLRHKLTLSDGESGEEKPTKPKEHKEAK 1354

>TNR11_HUMAN (Q9Y6Q6) Tumor necrosis factor receptor superfamily member 11A|
           precursor (Receptor activator of NF-KB) (Osteoclast
           differentiation factor receptor) (ODFR) (CD265 antigen)
          Length = 616

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 285 EAATISISGN*TTPSPCANHGSLNWGTTSFCCR 383
           +A    ++GN TTP  CA     +W     CCR
Sbjct: 96  KALVAVVAGNSTTPRRCACTAGYHWSQDCECCR 128

>NPT2B_HUMAN (O95436) Sodium-dependent phosphate transport protein 2B|
           (Sodium/phosphate cotransporter 2B) (Na(+)/Pi
           cotransporter 2B) (Sodium-phosphate transport protein
           2B) (Na(+)-dependent phosphate cotransporter 2B)
           (NaPi-2b) (Solute carrier family 34
          Length = 690

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 258 FCLPFSNKSEA-ATISISGN*TTPSPCANHGSLNW 359
           +C  F+NK++   T+  + N T+PS C   G  NW
Sbjct: 302 WCKTFTNKTQINVTVPSTANCTSPSLCWTDGIQNW 336


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,325,350
Number of Sequences: 219361
Number of extensions: 507737
Number of successful extensions: 1553
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1553
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)