ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl16f03 |
|---|---|
| Clone Library Name | barley_pub |
>PRP8_MOUSE (Q99PV0) Pre-mRNA-processing-splicing factor 8 (Splicing factor Prp8)| Length = 2335 Score = 216 bits (550), Expect = 1e-56 Identities = 101/128 (78%), Positives = 112/128 (87%) Frame = +1 Query: 4 EHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENGFV 183 EHPDPNNEN+VGYNNKKCWPRDARMRLMKHDVNLGR+VFWD+KNRLPRS+TT++WEN FV Sbjct: 1116 EHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFV 1175 Query: 184 SVYSKDNPNLLFSMSGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTXERTAIAFLRGDD 363 SVYSKDNPNLLF+M GFE RILPK R + E F++ KDGVWNLQNE T ERTA FLR DD Sbjct: 1176 SVYSKDNPNLLFNMCGFECRILPKCRTSYEEFTH-KDGVWNLQNEVTKERTAQCFLRVDD 1234 Query: 364 EHMKVFEN 387 E M+ F N Sbjct: 1235 ESMQRFHN 1242
>PRP8_HUMAN (Q6P2Q9) Pre-mRNA-processing-splicing factor 8 (Splicing factor Prp8)| (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220) Length = 2335 Score = 216 bits (550), Expect = 1e-56 Identities = 101/128 (78%), Positives = 112/128 (87%) Frame = +1 Query: 4 EHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENGFV 183 EHPDPNNEN+VGYNNKKCWPRDARMRLMKHDVNLGR+VFWD+KNRLPRS+TT++WEN FV Sbjct: 1116 EHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFV 1175 Query: 184 SVYSKDNPNLLFSMSGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTXERTAIAFLRGDD 363 SVYSKDNPNLLF+M GFE RILPK R + E F++ KDGVWNLQNE T ERTA FLR DD Sbjct: 1176 SVYSKDNPNLLFNMCGFECRILPKCRTSYEEFTH-KDGVWNLQNEVTKERTAQCFLRVDD 1234 Query: 364 EHMKVFEN 387 E M+ F N Sbjct: 1235 ESMQRFHN 1242
>PRP8_CAEEL (P34369) Pre-mRNA-splicing factor 8 homolog| Length = 2329 Score = 212 bits (540), Expect = 2e-55 Identities = 99/128 (77%), Positives = 109/128 (85%) Frame = +1 Query: 4 EHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENGFV 183 EHPDPNNEN+VGYNNKKCWPRDARMRLMKHDVNLGR+VFWD+KNRLPRSITT+EWEN FV Sbjct: 1108 EHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSITTVEWENSFV 1167 Query: 184 SVYSKDNPNLLFSMSGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTXERTAIAFLRGDD 363 SVYSKDNPN+LF MSGFE RILPK R E F + +DGVWNLQNE T ERTA FL+ D+ Sbjct: 1168 SVYSKDNPNMLFDMSGFECRILPKCRTANEEFVH-RDGVWNLQNEVTKERTAQCFLKVDE 1226 Query: 364 EHMKVFEN 387 E + F N Sbjct: 1227 ESLSKFHN 1234
>PRP8_YEAST (P33334) Pre-mRNA-splicing factor 8| Length = 2413 Score = 174 bits (440), Expect = 6e-44 Identities = 79/129 (61%), Positives = 110/129 (85%) Frame = +1 Query: 1 AEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENGF 180 AE+PDPN EN +GYNN+KCWP+D+RMRL++ DVNLGR+VFW++++R+P S+T+++WEN F Sbjct: 1188 AENPDPNFENSIGYNNRKCWPKDSRMRLIRQDVNLGRAVFWEIQSRVPTSLTSIKWENAF 1247 Query: 181 VSVYSKDNPNLLFSMSGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTXERTAIAFLRGD 360 VSVYSK+NPNLLFSM GFEVRILP+ RM +E SN +GVW+L +E+T +RTA A+L+ Sbjct: 1248 VSVYSKNNPNLLFSMCGFEVRILPRQRM-EEVVSN-DEGVWDLVDERTKQRTAKAYLKVS 1305 Query: 361 DEHMKVFEN 387 +E +K F++ Sbjct: 1306 EEEIKKFDS 1314
>SYG_METJA (Q57681) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA| ligase) (GlyRS) Length = 577 Score = 30.8 bits (68), Expect = 0.82 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%) Frame = -3 Query: 315 ILQVPYSIFCVAECLLSHTYL----RQYTDLKPRHAKEQVWVILAVYRD 181 +++ Y I + CLL H+Y R Y DLKP A + +V+ V +D Sbjct: 445 VIEPSYGIDRITYCLLEHSYREEEDRVYLDLKPSIAPIKAYVLPLVNKD 493
>GIT2_HUMAN (Q14161) ARF GTPase-activating protein GIT2 (G protein-coupled| receptor kinase-interactor 2) (GRK-interacting protein 2) (Cool-interacting tyrosine-phosphorylated protein 2) (CAT2) (CAT-2) Length = 759 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +1 Query: 61 PRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEW 168 P ++RMRL ++GRS + LP +TL W Sbjct: 534 PEESRMRLQPFPAHIGRSALVTSSSSLPSFPSTLSW 569
>FREM1_MOUSE (Q684R7) FRAS1-related extracellular matrix protein 1 precursor| (QBRICK protein) Length = 2191 Score = 29.6 bits (65), Expect = 1.8 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 8/64 (12%) Frame = -1 Query: 221 LKSRFGLSLLYTETKP--FSHSNVVILLGRRFFI------SQNTLLPRLTSCFMSLILAS 66 ++SR G L+YT T+P FS S+ + G+ F + ++N P L+S LIL S Sbjct: 677 MESRDG-ELIYTVTRPPCFSFSHRHLDAGKLFMVDSIPKLTKNPTAPGLSSFTQGLILIS 735 Query: 65 LGQH 54 QH Sbjct: 736 ANQH 739
>YCOM_RHORU (P72315) Hypothetical 49.9 kDa protein in cooM 5'region| Length = 463 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/48 (35%), Positives = 21/48 (43%) Frame = +1 Query: 94 DVNLGRSVFWDMKNRLPRSITTLEWENGFVSVYSKDNPNLLFSMSGFE 237 D+ GR V W M RL L EN F + PN L + GF+ Sbjct: 385 DIRNGRDVEWAMTTRLDAKTGILVIENAFGHGLNPTFPNYLGTKVGFD 432
>NIA_BEABA (P43100) Nitrate reductase [NADPH] (EC 1.7.1.3) (NR)| Length = 894 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = -3 Query: 255 LRQYTDLKPRHAKEQVWVILAVYRD 181 +R YT L HAK Q+ +++ +YRD Sbjct: 691 IRAYTPLSETHAKGQLDILIKIYRD 715
>CRNL1_RAT (P63155) Crooked neck-like protein 1 (Crooked neck homolog)| (Crooked neck protein) Length = 690 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/54 (35%), Positives = 25/54 (46%) Frame = +1 Query: 34 VGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENGFVSVYS 195 V Y N W + A M + VN R++ WD R+ITTL N F Y+ Sbjct: 110 VDYRNITLWLKYAEMEMKNRQVNHARNI-WD------RAITTLPRVNQFWYKYT 156
>CRNL1_MOUSE (P63154) Crooked neck-like protein 1 (Crooked neck homolog)| Length = 690 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/54 (35%), Positives = 25/54 (46%) Frame = +1 Query: 34 VGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENGFVSVYS 195 V Y N W + A M + VN R++ WD R+ITTL N F Y+ Sbjct: 110 VDYRNITLWLKYAEMEMKNRQVNHARNI-WD------RAITTLPRVNQFWYKYT 156
>CRNL1_HUMAN (Q9BZJ0) Crooked neck-like protein 1 (Crooked neck homolog) (hCrn)| Length = 848 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/54 (35%), Positives = 25/54 (46%) Frame = +1 Query: 34 VGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENGFVSVYS 195 V Y N W + A M + VN R++ WD R+ITTL N F Y+ Sbjct: 271 VDYRNITLWLKYAEMEMKNRQVNHARNI-WD------RAITTLPRVNQFWYKYT 317
>CBPA2_HUMAN (P48052) Carboxypeptidase A2 precursor (EC 3.4.17.15)| Length = 417 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +1 Query: 154 TTLEWENGFVSVYSKDNPNLLFSMSGFEVRILPKIRMTQEAFSNTKDGVW 303 T L N VS Y KD P++ + ++ +LP FS TK+ +W Sbjct: 186 TALWTANKIVSDYGKD-PSITSILDALDIFLLPVTNPDGYVFSQTKNRMW 234
>Y411_BUCBP (Q89AA9) Hypothetical transport protein bbp_411| Length = 394 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%) Frame = -1 Query: 236 SNPDMLKSRFGLSLLYTETKPFSHSNVVILLGRRF----FISQNTLLPRLTSCFMS 81 SN + S F L Y F H+N+ ++LG + FI T+LP L + F S Sbjct: 280 SNITITTSAFLFVLCYGIFLLFGHNNISLILGLQIFFIAFIFLETILPALVNKFSS 335
>PCD15_MOUSE (Q99PJ1) Protocadherin-15 precursor| Length = 1943 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = +1 Query: 61 PRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWE 171 PR+ R+ V+ R + W NR P +I +EW+ Sbjct: 1573 PREKIQRVWNQSVSFPRRLMWKAPNR-PETIDLVEWQ 1608
>GIT2_MOUSE (Q9JLQ2) ARF GTPase-activating protein GIT2 (G protein-coupled| receptor kinase-interactor 2) (Cool-interacting tyrosine-phosphorylated protein 2) (CAT2) (CAT-2) Length = 708 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = +1 Query: 61 PRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEW 168 P ++R RL ++GRS + LP +TL W Sbjct: 483 PEESRTRLQPFPTHIGRSALVTSSSSLPSFPSTLSW 518 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,187,848 Number of Sequences: 219361 Number of extensions: 1198193 Number of successful extensions: 2865 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2814 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2860 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
