ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl16f03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_550362.1| Oryza sativa (japonica cultivar-group), mRNA Length = 7053 Score = 434 bits (219), Expect = e-119 Identities = 344/386 (89%) Strand = Plus / Plus Query: 4 gagcatcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcct 63 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 3388 gagcatcctgatcctaataatgagaacatggtcggttacaacaacaagaaatgttggcct 3447 Query: 64 agagatgcaagaatgaggctcatgaagcatgatgttaatctgggaagaagtgtattttgg 123 ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| Sbjct: 3448 agagacgcaagaatgaggctcatgaagcatgatgtaaatcttggaagaagtgttttttgg 3507 Query: 124 gatatgaagaaccgcctgccaaggagtattactacattagaatgggagaatggctttgtc 183 || |||||||||||||| |||||||| || || || ||||| |||||||| |||||||| Sbjct: 3508 gacatgaagaaccgccttccaaggagcatcacaacgttagagtgggagaacagctttgtc 3567 Query: 184 tctgtatacagcaaggataacccaaacctgctctttagcatgtctgggtttgaggtccgt 243 ||||| ||||||||||| ||||| || ||||| |||||||||| |||||||||||| ||| Sbjct: 3568 tctgtttacagcaaggacaaccctaatctgctgtttagcatgtgtgggtttgaggttcgt 3627 Query: 244 atactgccgaagatacgtatgactcaggaggcattcagcaacacaaaagatggagtatgg 303 ||||| || || ||||| |||||||| || || || || ||||| ||||||||||| ||| Sbjct: 3628 atactaccaaaaatacggatgactcaagaagcgtttagtaacaccaaagatggagtctgg 3687 Query: 304 aacttgcagaatgagcagacanaagaaaggacagctattgcatttttgaggggtgatgat 363 |||||||||||||| |||||| ||||||||||||||||||| ||| | || | ||||||| Sbjct: 3688 aacttgcagaatgaacagacaaaagaaaggacagctattgcctttctaagagttgatgat 3747 Query: 364 gaacacatgaaggtgtttgagaaccg 389 || || ||||| |||||||||||||| Sbjct: 3748 gagcatatgaaagtgtttgagaaccg 3773
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 434 bits (219), Expect = e-119 Identities = 344/386 (89%) Strand = Plus / Minus Query: 4 gagcatcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcct 63 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 3367525 gagcatcctgatcctaataatgagaacatggtcggttacaacaacaagaaatgttggcct 3367466 Query: 64 agagatgcaagaatgaggctcatgaagcatgatgttaatctgggaagaagtgtattttgg 123 ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| Sbjct: 3367465 agagacgcaagaatgaggctcatgaagcatgatgtaaatcttggaagaagtgttttttgg 3367406 Query: 124 gatatgaagaaccgcctgccaaggagtattactacattagaatgggagaatggctttgtc 183 || |||||||||||||| |||||||| || || || ||||| |||||||| |||||||| Sbjct: 3367405 gacatgaagaaccgccttccaaggagcatcacaacgttagagtgggagaacagctttgtc 3367346 Query: 184 tctgtatacagcaaggataacccaaacctgctctttagcatgtctgggtttgaggtccgt 243 ||||| ||||||||||| ||||| || ||||| |||||||||| |||||||||||| ||| Sbjct: 3367345 tctgtttacagcaaggacaaccctaatctgctgtttagcatgtgtgggtttgaggttcgt 3367286 Query: 244 atactgccgaagatacgtatgactcaggaggcattcagcaacacaaaagatggagtatgg 303 ||||| || || ||||| |||||||| || || || || ||||| ||||||||||| ||| Sbjct: 3367285 atactaccaaaaatacggatgactcaagaagcgtttagtaacaccaaagatggagtctgg 3367226 Query: 304 aacttgcagaatgagcagacanaagaaaggacagctattgcatttttgaggggtgatgat 363 |||||||||||||| |||||| ||||||||||||||||||| ||| | || | ||||||| Sbjct: 3367225 aacttgcagaatgaacagacaaaagaaaggacagctattgcctttctaagagttgatgat 3367166 Query: 364 gaacacatgaaggtgtttgagaaccg 389 || || ||||| |||||||||||||| Sbjct: 3367165 gagcatatgaaagtgtttgagaaccg 3367140
>dbj|AB023482.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone P0680A03 Length = 156054 Score = 434 bits (219), Expect = e-119 Identities = 344/386 (89%) Strand = Plus / Minus Query: 4 gagcatcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcct 63 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 59079 gagcatcctgatcctaataatgagaacatggtcggttacaacaacaagaaatgttggcct 59020 Query: 64 agagatgcaagaatgaggctcatgaagcatgatgttaatctgggaagaagtgtattttgg 123 ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| Sbjct: 59019 agagacgcaagaatgaggctcatgaagcatgatgtaaatcttggaagaagtgttttttgg 58960 Query: 124 gatatgaagaaccgcctgccaaggagtattactacattagaatgggagaatggctttgtc 183 || |||||||||||||| |||||||| || || || ||||| |||||||| |||||||| Sbjct: 58959 gacatgaagaaccgccttccaaggagcatcacaacgttagagtgggagaacagctttgtc 58900 Query: 184 tctgtatacagcaaggataacccaaacctgctctttagcatgtctgggtttgaggtccgt 243 ||||| ||||||||||| ||||| || ||||| |||||||||| |||||||||||| ||| Sbjct: 58899 tctgtttacagcaaggacaaccctaatctgctgtttagcatgtgtgggtttgaggttcgt 58840 Query: 244 atactgccgaagatacgtatgactcaggaggcattcagcaacacaaaagatggagtatgg 303 ||||| || || ||||| |||||||| || || || || ||||| ||||||||||| ||| Sbjct: 58839 atactaccaaaaatacggatgactcaagaagcgtttagtaacaccaaagatggagtctgg 58780 Query: 304 aacttgcagaatgagcagacanaagaaaggacagctattgcatttttgaggggtgatgat 363 |||||||||||||| |||||| ||||||||||||||||||| ||| | || | ||||||| Sbjct: 58779 aacttgcagaatgaacagacaaaagaaaggacagctattgcctttctaagagttgatgat 58720 Query: 364 gaacacatgaaggtgtttgagaaccg 389 || || ||||| |||||||||||||| Sbjct: 58719 gagcatatgaaagtgtttgagaaccg 58694
>ref|XM_475644.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 7053 Score = 430 bits (217), Expect = e-117 Identities = 345/388 (88%) Strand = Plus / Plus Query: 2 ctgagcatcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggc 61 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 3386 ctgagcatcctgatcctaataatgagaacatggtcggttacaacaacaagaaatgttggc 3445 Query: 62 ctagagatgcaagaatgaggctcatgaagcatgatgttaatctgggaagaagtgtatttt 121 ||||||| |||||||||||||||||||||||||| || ||||| ||||||||||| |||| Sbjct: 3446 ctagagacgcaagaatgaggctcatgaagcatgacgtaaatcttggaagaagtgtttttt 3505 Query: 122 gggatatgaagaaccgcctgccaaggagtattactacattagaatgggagaatggctttg 181 |||| |||||||||||||| |||||||| || || || ||||| |||||||| |||||| Sbjct: 3506 gggacatgaagaaccgcctcccaaggagcatcacaacgttagagtgggagaacagctttg 3565 Query: 182 tctctgtatacagcaaggataacccaaacctgctctttagcatgtctgggtttgaggtcc 241 ||||||| ||||||||||| ||||| || ||||| |||||||||| ||||||||||| | Sbjct: 3566 tctctgtttacagcaaggacaaccctaatctgctttttagcatgtgcgggtttgaggttc 3625 Query: 242 gtatactgccgaagatacgtatgactcaggaggcattcagcaacacaaaagatggagtat 301 ||||||| || |||||||| |||||||| || || || || ||||| ||||||||||| | Sbjct: 3626 gtatactaccaaagatacggatgactcaagaagcgtttagtaacaccaaagatggagtct 3685 Query: 302 ggaacttgcagaatgagcagacanaagaaaggacagctattgcatttttgaggggtgatg 361 |||| ||||||||||| |||||| ||||||||||||||||||| ||| | || | ||||| Sbjct: 3686 ggaatttgcagaatgaacagacaaaagaaaggacagctattgcctttctaagagttgatg 3745 Query: 362 atgaacacatgaaggtgtttgagaaccg 389 ||||||| ||||| |||||||||||||| Sbjct: 3746 atgaacatatgaaagtgtttgagaaccg 3773
>gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099P06, complete sequence Length = 135117 Score = 430 bits (217), Expect = e-117 Identities = 345/388 (88%) Strand = Plus / Minus Query: 2 ctgagcatcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggc 61 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 71013 ctgagcatcctgatcctaataatgagaacatggtcggttacaacaacaagaaatgttggc 70954 Query: 62 ctagagatgcaagaatgaggctcatgaagcatgatgttaatctgggaagaagtgtatttt 121 ||||||| |||||||||||||||||||||||||| || ||||| ||||||||||| |||| Sbjct: 70953 ctagagacgcaagaatgaggctcatgaagcatgacgtaaatcttggaagaagtgtttttt 70894 Query: 122 gggatatgaagaaccgcctgccaaggagtattactacattagaatgggagaatggctttg 181 |||| |||||||||||||| |||||||| || || || ||||| |||||||| |||||| Sbjct: 70893 gggacatgaagaaccgcctcccaaggagcatcacaacgttagagtgggagaacagctttg 70834 Query: 182 tctctgtatacagcaaggataacccaaacctgctctttagcatgtctgggtttgaggtcc 241 ||||||| ||||||||||| ||||| || ||||| |||||||||| ||||||||||| | Sbjct: 70833 tctctgtttacagcaaggacaaccctaatctgctttttagcatgtgcgggtttgaggttc 70774 Query: 242 gtatactgccgaagatacgtatgactcaggaggcattcagcaacacaaaagatggagtat 301 ||||||| || |||||||| |||||||| || || || || ||||| ||||||||||| | Sbjct: 70773 gtatactaccaaagatacggatgactcaagaagcgtttagtaacaccaaagatggagtct 70714 Query: 302 ggaacttgcagaatgagcagacanaagaaaggacagctattgcatttttgaggggtgatg 361 |||| ||||||||||| |||||| ||||||||||||||||||| ||| | || | ||||| Sbjct: 70713 ggaatttgcagaatgaacagacaaaagaaaggacagctattgcctttctaagagttgatg 70654 Query: 362 atgaacacatgaaggtgtttgagaaccg 389 ||||||| ||||| |||||||||||||| Sbjct: 70653 atgaacatatgaaagtgtttgagaaccg 70626
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 430 bits (217), Expect = e-117 Identities = 345/388 (88%) Strand = Plus / Minus Query: 2 ctgagcatcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggc 61 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 3648666 ctgagcatcctgatcctaataatgagaacatggtcggttacaacaacaagaaatgttggc 3648607 Query: 62 ctagagatgcaagaatgaggctcatgaagcatgatgttaatctgggaagaagtgtatttt 121 ||||||| |||||||||||||||||||||||||| || ||||| ||||||||||| |||| Sbjct: 3648606 ctagagacgcaagaatgaggctcatgaagcatgacgtaaatcttggaagaagtgtttttt 3648547 Query: 122 gggatatgaagaaccgcctgccaaggagtattactacattagaatgggagaatggctttg 181 |||| |||||||||||||| |||||||| || || || ||||| |||||||| |||||| Sbjct: 3648546 gggacatgaagaaccgcctcccaaggagcatcacaacgttagagtgggagaacagctttg 3648487 Query: 182 tctctgtatacagcaaggataacccaaacctgctctttagcatgtctgggtttgaggtcc 241 ||||||| ||||||||||| ||||| || ||||| |||||||||| ||||||||||| | Sbjct: 3648486 tctctgtttacagcaaggacaaccctaatctgctttttagcatgtgcgggtttgaggttc 3648427 Query: 242 gtatactgccgaagatacgtatgactcaggaggcattcagcaacacaaaagatggagtat 301 ||||||| || |||||||| |||||||| || || || || ||||| ||||||||||| | Sbjct: 3648426 gtatactaccaaagatacggatgactcaagaagcgtttagtaacaccaaagatggagtct 3648367 Query: 302 ggaacttgcagaatgagcagacanaagaaaggacagctattgcatttttgaggggtgatg 361 |||| ||||||||||| |||||| ||||||||||||||||||| ||| | || | ||||| Sbjct: 3648366 ggaatttgcagaatgaacagacaaaagaaaggacagctattgcctttctaagagttgatg 3648307 Query: 362 atgaacacatgaaggtgtttgagaaccg 389 ||||||| ||||| |||||||||||||| Sbjct: 3648306 atgaacatatgaaagtgtttgagaaccg 3648279
>ref|NM_106656.2| Arabidopsis thaliana SUS2 (ABNORMAL SUSPENSOR 2) AT1G80070 (SUS2) mRNA, complete cds Length = 7386 Score = 230 bits (116), Expect = 3e-57 Identities = 316/383 (82%) Strand = Plus / Plus Query: 4 gagcatcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcct 63 |||||||| ||||| || ||||| |||||||| || |||||||| ||||| || ||||| Sbjct: 3484 gagcatcccgatcccaacaatgaaaacatggtgggatacaacaataagaagtgctggcca 3543 Query: 64 agagatgcaagaatgaggctcatgaagcatgatgttaatctgggaagaagtgtattttgg 123 ||||||||||| ||||| || ||||| |||||||| ||||| || |||||||| || ||| Sbjct: 3544 agagatgcaaggatgagactgatgaaacatgatgtcaatcttggtagaagtgtcttctgg 3603 Query: 124 gatatgaagaaccgcctgccaaggagtattactacattagaatgggagaatggctttgtc 183 || ||||||||||| || || |||| || ||||| || || |||||||||||||||||| Sbjct: 3604 gacatgaagaaccgtcttcctcggagcatcactactttggagtgggagaatggctttgtc 3663 Query: 184 tctgtatacagcaaggataacccaaacctgctctttagcatgtctgggtttgaggtccgt 243 ||||| || ||||||||||| || ||||||||||||||||||| ||| ||||| ||||| Sbjct: 3664 tctgtctatagcaaggataatcctaacctgctctttagcatgtgtggatttgaagtccgg 3723 Query: 244 atactgccgaagatacgtatgactcaggaggcattcagcaacacaaaagatggagtatgg 303 ||||| || || || | ||||| || || || |||||||||||||||||||| || ||| Sbjct: 3724 atactccctaaaatcaggatgacccaagaagctttcagcaacacaaaagatggtgtctgg 3783 Query: 304 aacttgcagaatgagcagacanaagaaaggacagctattgcatttttgaggggtgatgat 363 || |||| ||||| ||||| | || ||||| || | || ||| || ||| ||| ||| Sbjct: 3784 aatctgcaaaatgaacagacgaaggagaggactgcagtagcttttctgcgggttgacgat 3843 Query: 364 gaacacatgaaggtgtttgagaa 386 |||||||||||||| |||||||| Sbjct: 3844 gaacacatgaaggtatttgagaa 3866
>gb|AC153129.20| Medicago truncatula clone mth2-103o2, complete sequence Length = 111951 Score = 194 bits (98), Expect = 1e-46 Identities = 307/377 (81%) Strand = Plus / Minus Query: 10 cctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcctagagat 69 ||||||||||| |||||||||||||| || ||||| || ||||| || ||||| |||||| Sbjct: 81953 cctgatcctaacaatgagaacatggtggggtacaataataagaagtgctggccaagagat 81894 Query: 70 gcaagaatgaggctcatgaagcatgatgttaatctgggaagaagtgtattttgggatatg 129 ||||||||||||||||||||||||||||| ||||| || || ||||| |||||||||||| Sbjct: 81893 gcaagaatgaggctcatgaagcatgatgtcaatcttgggaggagtgtcttttgggatatg 81834 Query: 130 aagaaccgcctgccaaggagtattactacattagaatgggagaatggctttgtctctgta 189 || ||||| || || | || || || ||| | |||||||| || |||| || ||||| Sbjct: 81833 aaaaaccgtcttcctcgaagcatcacaacactggaatgggaaaacagcttcgtttctgtt 81774 Query: 190 tacagcaaggataacccaaacctgctctttagcatgtctgggtttgaggtccgtatactg 249 |||||||| ||||| |||||| |||| |||||||||| ||| ||||| || || ||||| Sbjct: 81773 tacagcaaagataatccaaacttgctttttagcatgtgtggatttgaagtgcggatactt 81714 Query: 250 ccgaagatacgtatgactcaggaggcattcagcaacacaaaagatggagtatggaacttg 309 || || || | | |||||| || |||||| | ||||||| |||||| || ||||| | Sbjct: 81713 cctaaaattagaacgactcaagaagcattcggtaacacaagagatggtgtttggaatctc 81654 Query: 310 cagaatgagcagacanaagaaaggacagctattgcatttttgaggggtgatgatgaacac 369 |||||||| || || ||||||||||||||| ||| || || || | |||||||||||| Sbjct: 81653 cagaatgaacaaaccaaagaaaggacagctactgctttcttaagagttgatgatgaacag 81594 Query: 370 atgaaggtgtttgagaa 386 || || |||||||||| Sbjct: 81593 attaaaatgtttgagaa 81577
>ref|NM_120038.3| Arabidopsis thaliana unknown protein AT4G38780 mRNA, complete cds Length = 7060 Score = 174 bits (88), Expect = 1e-40 Identities = 309/383 (80%) Strand = Plus / Plus Query: 4 gagcatcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcct 63 |||| ||||||||| || ||||| |||||||| || || ||||| || ||||| ||||| Sbjct: 3340 gagcgtcctgatcccaacaatgaaaacatggtgggatataacaataaaaaatgctggcca 3399 Query: 64 agagatgcaagaatgaggctcatgaagcatgatgttaatctgggaagaagtgtattttgg 123 ||||||||||| |||||| | ||||| |||||||| ||||| || |||||||| || ||| Sbjct: 3400 agagatgcaaggatgaggttaatgaaacatgatgtcaatcttggtagaagtgtcttctgg 3459 Query: 124 gatatgaagaaccgcctgccaaggagtattactacattagaatgggagaatggctttgtc 183 ||||||||||| || || ||| |||| || || || || || |||||||||||||| ||| Sbjct: 3460 gatatgaagaatcgtcttccacggagcatcacaaccttggagtgggagaatggcttcgtc 3519 Query: 184 tctgtatacagcaaggataacccaaacctgctctttagcatgtctgggtttgaggtccgt 243 || || |||||||||||||| |||||| |||| || ||||||| ||| ||||| ||||| Sbjct: 3520 tccgtgtacagcaaggataatccaaacttgcttttcagcatgtgtggatttgaagtccgc 3579 Query: 244 atactgccgaagatacgtatgactcaggaggcattcagcaacacaaaagatggagtatgg 303 | || || || || | ||| ||| || || || |||| ||||| ||||| || ||| Sbjct: 3580 gtgcttccaaaaatcaggatgggtcaagaagcttttagcagcacaagggatggtgtctgg 3639 Query: 304 aacttgcagaatgagcagacanaagaaaggacagctattgcatttttgaggggtgatgat 363 || |||||||||| || || |||| ||||| || |||| ||| || ||| ||||||| Sbjct: 3640 aatctgcagaatgaacaaactaaagagaggactgcagttgcttttctgcgggctgatgat 3699 Query: 364 gaacacatgaaggtgtttgagaa 386 ||||||||||||||||||||||| Sbjct: 3700 gaacacatgaaggtgtttgagaa 3722
>dbj|AK099780.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095K10, full insert sequence Length = 3618 Score = 119 bits (60), Expect = 7e-24 Identities = 95/107 (88%) Strand = Plus / Plus Query: 283 aacacaaaagatggagtatggaacttgcagaatgagcagacanaagaaaggacagctatt 342 ||||| ||||||||||| ||||||||||||||||| |||||| ||||||||||||||||| Sbjct: 8 aacaccaaagatggagtctggaacttgcagaatgaacagacaaaagaaaggacagctatt 67 Query: 343 gcatttttgaggggtgatgatgaacacatgaaggtgtttgagaaccg 389 || ||| | || | ||||||||| || ||||| |||||||||||||| Sbjct: 68 gcctttctaagagttgatgatgagcatatgaaagtgtttgagaaccg 114
>ref|XM_777687.1| PREDICTED: Strongylocentrotus purpuratus similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220) (LOC577459), mRNA Length = 5226 Score = 117 bits (59), Expect = 3e-23 Identities = 113/131 (86%) Strand = Plus / Plus Query: 4 gagcatcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcct 63 |||||||| |||||||| |||||||| || || ||||| |||||||||||||| ||||| Sbjct: 1279 gagcatcccgatcctaacaatgagaatattgtgggttataacaacaagaaatgctggcca 1338 Query: 64 agagatgcaagaatgaggctcatgaagcatgatgttaatctgggaagaagtgtattttgg 123 ||||||||||| ||||| || |||||||||||||| ||||||||| || ||| || ||| Sbjct: 1339 agagatgcaaggatgagacttatgaagcatgatgtcaatctgggacgagctgtcttctgg 1398 Query: 124 gatatgaagaa 134 || |||||||| Sbjct: 1399 gacatgaagaa 1409 Score = 61.9 bits (31), Expect = 1e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 176 gctttgtctctgtatacagcaaggataacccaaacctgctctt 218 ||||||||||||| ||||||||||| ||||| ||||||||||| Sbjct: 1451 gctttgtctctgtctacagcaaggacaaccctaacctgctctt 1493
>gb|AC009322.1|AC009322 Arabidopsis thaliana chromosome I BAC F18B13 genomic sequence, complete sequence Length = 116905 Score = 109 bits (55), Expect = 7e-21 Identities = 109/127 (85%) Strand = Plus / Plus Query: 100 aatctgggaagaagtgtattttgggatatgaagaaccgcctgccaaggagtattactaca 159 ||||| || |||||||| || ||||| ||||||||||| || || |||| || ||||| Sbjct: 59258 aatcttggtagaagtgtcttctgggacatgaagaaccgtcttcctcggagcatcactact 59317 Query: 160 ttagaatgggagaatggctttgtctctgtatacagcaaggataacccaaacctgctcttt 219 || || ||||||||||||||||||||||| || ||||||||||| || |||||||||||| Sbjct: 59318 ttggagtgggagaatggctttgtctctgtctatagcaaggataatcctaacctgctcttt 59377 Query: 220 agcatgt 226 ||||||| Sbjct: 59378 agcatgt 59384 Score = 75.8 bits (38), Expect = 9e-11 Identities = 80/94 (85%) Strand = Plus / Plus Query: 4 gagcatcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcct 63 |||||||| ||||| || ||||| |||||||| || |||||||| ||||| || ||||| Sbjct: 59068 gagcatcccgatcccaacaatgaaaacatggtgggatacaacaataagaagtgctggcca 59127 Query: 64 agagatgcaagaatgaggctcatgaagcatgatg 97 ||||||||||| ||||| || ||||| ||||||| Sbjct: 59128 agagatgcaaggatgagactgatgaaacatgatg 59161 Score = 61.9 bits (31), Expect = 1e-06 Identities = 90/110 (81%) Strand = Plus / Plus Query: 277 ttcagcaacacaaaagatggagtatggaacttgcagaatgagcagacanaagaaaggaca 336 |||||||||||||||||||| || ||||| |||| ||||| ||||| | || ||||| Sbjct: 59549 ttcagcaacacaaaagatggtgtctggaatctgcaaaatgaacagacgaaggagaggact 59608 Query: 337 gctattgcatttttgaggggtgatgatgaacacatgaaggtgtttgagaa 386 || | || ||| || ||| ||| ||||||||||||||||| |||||||| Sbjct: 59609 gcagtagcttttctgcgggttgacgatgaacacatgaaggtatttgagaa 59658
>ref|XM_961838.1| PREDICTED: Tribolium castaneum similar to CG8877-PA (LOC655310), mRNA Length = 7169 Score = 95.6 bits (48), Expect = 1e-16 Identities = 105/124 (84%) Strand = Plus / Plus Query: 2 ctgagcatcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggc 61 |||| ||||||||||| |||||||| || || ||||||||||| |||||||||||||||| Sbjct: 3431 ctgaacatcctgatccaaataatgaaaatattgttggttacaataacaagaaatgttggc 3490 Query: 62 ctagagatgcaagaatgaggctcatgaagcatgatgttaatctgggaagaagtgtatttt 121 | || ||||| |||||||| | ||||| ||||| ||||| ||||| || |||||||| Sbjct: 3491 ccagggatgccagaatgagattgatgaaacatgacgttaacctgggtcgagctgtatttt 3550 Query: 122 ggga 125 |||| Sbjct: 3551 ggga 3554
>emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 90 Length = 198987 Score = 85.7 bits (43), Expect = 1e-13 Identities = 106/127 (83%) Strand = Plus / Minus Query: 100 aatctgggaagaagtgtattttgggatatgaagaaccgcctgccaaggagtattactaca 159 ||||| || |||||||| || |||||||||||||| || || ||| |||| || || || Sbjct: 20658 aatcttggtagaagtgtcttctgggatatgaagaatcgtcttccacggagcatcacaacc 20599 Query: 160 ttagaatgggagaatggctttgtctctgtatacagcaaggataacccaaacctgctcttt 219 || || |||||||||||||| ||||| || |||||||||||||| |||||| |||| || Sbjct: 20598 ttggagtgggagaatggcttcgtctccgtgtacagcaaggataatccaaacttgcttttc 20539 Query: 220 agcatgt 226 ||||||| Sbjct: 20538 agcatgt 20532 Score = 67.9 bits (34), Expect = 2e-08 Identities = 79/94 (84%) Strand = Plus / Minus Query: 4 gagcatcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcct 63 |||| ||||||||| || ||||| |||||||| || || ||||| || ||||| ||||| Sbjct: 20828 gagcgtcctgatcccaacaatgaaaacatggtgggatataacaataaaaaatgctggcca 20769 Query: 64 agagatgcaagaatgaggctcatgaagcatgatg 97 ||||||||||| |||||| | ||||| ||||||| Sbjct: 20768 agagatgcaaggatgaggttaatgaaacatgatg 20735 Score = 63.9 bits (32), Expect = 4e-07 Identities = 67/79 (84%) Strand = Plus / Minus Query: 308 tgcagaatgagcagacanaagaaaggacagctattgcatttttgaggggtgatgatgaac 367 |||||||||| || || |||| ||||| || |||| ||| || ||| ||||||||||| Sbjct: 20332 tgcagaatgaacaaactaaagagaggactgcagttgcttttctgcgggctgatgatgaac 20273 Query: 368 acatgaaggtgtttgagaa 386 ||||||||||||||||||| Sbjct: 20272 acatgaaggtgtttgagaa 20254
>emb|AL035656.1|ATT9A14 Arabidopsis thaliana DNA chromosome 4, BAC clone T9A14 (ESSA project) Length = 88164 Score = 85.7 bits (43), Expect = 1e-13 Identities = 106/127 (83%) Strand = Plus / Minus Query: 100 aatctgggaagaagtgtattttgggatatgaagaaccgcctgccaaggagtattactaca 159 ||||| || |||||||| || |||||||||||||| || || ||| |||| || || || Sbjct: 53073 aatcttggtagaagtgtcttctgggatatgaagaatcgtcttccacggagcatcacaacc 53014 Query: 160 ttagaatgggagaatggctttgtctctgtatacagcaaggataacccaaacctgctcttt 219 || || |||||||||||||| ||||| || |||||||||||||| |||||| |||| || Sbjct: 53013 ttggagtgggagaatggcttcgtctccgtgtacagcaaggataatccaaacttgcttttc 52954 Query: 220 agcatgt 226 ||||||| Sbjct: 52953 agcatgt 52947 Score = 67.9 bits (34), Expect = 2e-08 Identities = 79/94 (84%) Strand = Plus / Minus Query: 4 gagcatcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcct 63 |||| ||||||||| || ||||| |||||||| || || ||||| || ||||| ||||| Sbjct: 53243 gagcgtcctgatcccaacaatgaaaacatggtgggatataacaataaaaaatgctggcca 53184 Query: 64 agagatgcaagaatgaggctcatgaagcatgatg 97 ||||||||||| |||||| | ||||| ||||||| Sbjct: 53183 agagatgcaaggatgaggttaatgaaacatgatg 53150 Score = 63.9 bits (32), Expect = 4e-07 Identities = 67/79 (84%) Strand = Plus / Minus Query: 308 tgcagaatgagcagacanaagaaaggacagctattgcatttttgaggggtgatgatgaac 367 |||||||||| || || |||| ||||| || |||| ||| || ||| ||||||||||| Sbjct: 52747 tgcagaatgaacaaactaaagagaggactgcagttgcttttctgcgggctgatgatgaac 52688 Query: 368 acatgaaggtgtttgagaa 386 ||||||||||||||||||| Sbjct: 52687 acatgaaggtgtttgagaa 52669
>gb|AC069327.7|AC069327 Genomic Sequence For Arabidopsis thaliana Clone T26G08 From Chromosome IV, complete sequence Length = 94770 Score = 85.7 bits (43), Expect = 1e-13 Identities = 106/127 (83%) Strand = Plus / Plus Query: 100 aatctgggaagaagtgtattttgggatatgaagaaccgcctgccaaggagtattactaca 159 ||||| || |||||||| || |||||||||||||| || || ||| |||| || || || Sbjct: 27831 aatcttggtagaagtgtcttctgggatatgaagaatcgtcttccacggagcatcacaacc 27890 Query: 160 ttagaatgggagaatggctttgtctctgtatacagcaaggataacccaaacctgctcttt 219 || || |||||||||||||| ||||| || |||||||||||||| |||||| |||| || Sbjct: 27891 ttggagtgggagaatggcttcgtctccgtgtacagcaaggataatccaaacttgcttttc 27950 Query: 220 agcatgt 226 ||||||| Sbjct: 27951 agcatgt 27957 Score = 67.9 bits (34), Expect = 2e-08 Identities = 79/94 (84%) Strand = Plus / Plus Query: 4 gagcatcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcct 63 |||| ||||||||| || ||||| |||||||| || || ||||| || ||||| ||||| Sbjct: 27661 gagcgtcctgatcccaacaatgaaaacatggtgggatataacaataaaaaatgctggcca 27720 Query: 64 agagatgcaagaatgaggctcatgaagcatgatg 97 ||||||||||| |||||| | ||||| ||||||| Sbjct: 27721 agagatgcaaggatgaggttaatgaaacatgatg 27754 Score = 63.9 bits (32), Expect = 4e-07 Identities = 67/79 (84%) Strand = Plus / Plus Query: 308 tgcagaatgagcagacanaagaaaggacagctattgcatttttgaggggtgatgatgaac 367 |||||||||| || || |||| ||||| || |||| ||| || ||| ||||||||||| Sbjct: 28157 tgcagaatgaacaaactaaagagaggactgcagttgcttttctgcgggctgatgatgaac 28216 Query: 368 acatgaaggtgtttgagaa 386 ||||||||||||||||||| Sbjct: 28217 acatgaaggtgtttgagaa 28235
>ref|XM_781832.1| PREDICTED: Strongylocentrotus purpuratus similar to pre-mRNA processing factor 8 (LOC581853), mRNA Length = 858 Score = 81.8 bits (41), Expect = 2e-12 Identities = 80/92 (86%), Gaps = 2/92 (2%) Strand = Plus / Plus Query: 4 gagcatcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcct 63 |||||||| |||||||| ||||||||||| || ||||| |||||||||||||| || | Sbjct: 769 gagcatcccgatcctaacaatgagaacattgtgggttataacaacaagaaatgctg--cc 826 Query: 64 agagatgcaagaatgaggctcatgaagcatga 95 ||||||||||| ||||| || ||||||||||| Sbjct: 827 agagatgcaaggatgagacttatgaagcatga 858
>ref|XM_624011.1| PREDICTED: Apis mellifera similar to ENSANGP00000005722 (LOC551620), partial mRNA Length = 6571 Score = 79.8 bits (40), Expect = 6e-12 Identities = 82/96 (85%) Strand = Plus / Plus Query: 7 catcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcctaga 66 ||||| |||||||||||||| || || |||||||| || || || |||||||||||| || Sbjct: 2912 catccagatcctaataatgaaaatatcgttggttataataataaaaaatgttggcctcga 2971 Query: 67 gatgcaagaatgaggctcatgaagcatgatgttaat 102 |||||| ||||| | || ||||| |||||||||||| Sbjct: 2972 gatgcacgaatgcgtcttatgaaacatgatgttaat 3007
>emb|AL591496.13| Mouse DNA sequence from clone RP23-384C18 on chromosome 11 Contains the 3' end of a novel gene, five novel genes, the Serpinf1 and Serpinf2 genes for serine (or cysteine) proteinase inhibitor, clade F) members 1 and 2, an H+ transporting mitochondrial F0 complex ATP synthase subunit c (subunit 9) isoform 1 (Atp5g1) pseudogene, the Prpf8 gene for pre-mRNA processing factor 8, the gene for the ortholog of human scavenger receptor class F member 1 SCARF1, the 5' end of the gene for novel protein similar to solute carrier family 43 member 1 Slc43a1 and seven CpG islands, complete sequence Length = 205633 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 22 aatgagaacatggttggttacaacaacaagaaatgttggcctagagatgcaagaatgagg 81 ||||| ||||| ||||| ||||| ||||||||||| ||||| ||||||| ||||| || Sbjct: 141096 aatgaaaacattgttggctacaataacaagaaatgctggccccgagatgcccgaatgcgg 141155 Query: 82 ctcatgaagcatgatgt 98 ||||||||||||||||| Sbjct: 141156 ctcatgaagcatgatgt 141172
>gb|AC002121.1| Genomic sequence from Mouse 11, complete sequence Length = 84056 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 22 aatgagaacatggttggttacaacaacaagaaatgttggcctagagatgcaagaatgagg 81 ||||| ||||| ||||| ||||| ||||||||||| ||||| ||||||| ||||| || Sbjct: 59454 aatgaaaacattgttggctacaataacaagaaatgctggccccgagatgcccgaatgcgg 59395 Query: 82 ctcatgaagcatgatgt 98 ||||||||||||||||| Sbjct: 59394 ctcatgaagcatgatgt 59378
>ref|NM_138659.1| Mus musculus pre-mRNA processing factor 8 (Prpf8), mRNA Length = 7143 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 22 aatgagaacatggttggttacaacaacaagaaatgttggcctagagatgcaagaatgagg 81 ||||| ||||| ||||| ||||| ||||||||||| ||||| ||||||| ||||| || Sbjct: 3405 aatgaaaacattgttggctacaataacaagaaatgctggccccgagatgcccgaatgcgg 3464 Query: 82 ctcatgaagcatgatgt 98 ||||||||||||||||| Sbjct: 3465 ctcatgaagcatgatgt 3481
>dbj|AB047391.1| Mus musculus Prp8 mRNA for pre-mRNA processing 8 protein, complete cds Length = 7143 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 22 aatgagaacatggttggttacaacaacaagaaatgttggcctagagatgcaagaatgagg 81 ||||| ||||| ||||| ||||| ||||||||||| ||||| ||||||| ||||| || Sbjct: 3405 aatgaaaacattgttggctacaataacaagaaatgctggccccgagatgcccgaatgcgg 3464 Query: 82 ctcatgaagcatgatgt 98 ||||||||||||||||| Sbjct: 3465 ctcatgaagcatgatgt 3481
>ref|NM_066384.2| Caenorhabditis elegans yeast PRP (splicing factor) related family member (prp-8) (prp-8) mRNA, complete cds Length = 7382 Score = 71.9 bits (36), Expect = 1e-09 Identities = 87/104 (83%) Strand = Plus / Plus Query: 4 gagcatcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcct 63 |||||||| ||||| ||||||||||| || || ||||| |||||||| || |||||||| Sbjct: 3322 gagcatccagatccgaataatgagaatattgtcggttataacaacaaaaagtgttggcca 3381 Query: 64 agagatgcaagaatgaggctcatgaagcatgatgttaatctggg 107 ||||| || |||||||| | ||||| |||||||| ||| |||| Sbjct: 3382 agagacgctagaatgagattgatgaaacatgatgtcaatttggg 3425
>gb|L14433.1| Caenorhabditis elegans cosmid C50C3, complete sequence Length = 44733 Score = 71.9 bits (36), Expect = 1e-09 Identities = 87/104 (83%) Strand = Plus / Plus Query: 4 gagcatcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcct 63 |||||||| ||||| ||||||||||| || || ||||| |||||||| || |||||||| Sbjct: 9885 gagcatccagatccgaataatgagaatattgtcggttataacaacaaaaagtgttggcca 9944 Query: 64 agagatgcaagaatgaggctcatgaagcatgatgttaatctggg 107 ||||| || |||||||| | ||||| |||||||| ||| |||| Sbjct: 9945 agagacgctagaatgagattgatgaaacatgatgtcaatttggg 9988
>emb|CR522882.5| Zebrafish DNA sequence from clone CH211-209M4 in linkage group 15, complete sequence Length = 129430 Score = 65.9 bits (33), Expect = 9e-08 Identities = 66/77 (85%) Strand = Plus / Plus Query: 22 aatgagaacatggttggttacaacaacaagaaatgttggcctagagatgcaagaatgagg 81 ||||||||||| || || |||||||| |||||||| |||||| ||||||| || ||||| Sbjct: 63495 aatgagaacattgtggggtacaacaataagaaatgctggcctcgagatgctaggatgaga 63554 Query: 82 ctcatgaagcatgatgt 98 || ||||| |||||||| Sbjct: 63555 ctgatgaaacatgatgt 63571 Score = 60.0 bits (30), Expect = 6e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 164 aatgggagaatggctttgtctctgtatacagcaaggataacccaaacctgctctttagca 223 |||||||||| | ||||| ||||| ||||||||||| ||||| || |||||||||| || Sbjct: 63724 aatgggagaacagttttgtgtctgtgtacagcaaggacaaccccaatctgctctttaaca 63783 Query: 224 tgtctgggtttgag 237 ||| ||| |||||| Sbjct: 63784 tgtgtggctttgag 63797
>ref|XM_694534.1| PREDICTED: Danio rerio zgc:56504 (zgc:56504), mRNA Length = 9226 Score = 65.9 bits (33), Expect = 9e-08 Identities = 66/77 (85%) Strand = Plus / Plus Query: 22 aatgagaacatggttggttacaacaacaagaaatgttggcctagagatgcaagaatgagg 81 ||||||||||| || || |||||||| |||||||| |||||| ||||||| || ||||| Sbjct: 3422 aatgagaacattgtggggtacaacaataagaaatgctggcctcgagatgctaggatgaga 3481 Query: 82 ctcatgaagcatgatgt 98 || ||||| |||||||| Sbjct: 3482 ctgatgaaacatgatgt 3498 Score = 60.0 bits (30), Expect = 6e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 164 aatgggagaatggctttgtctctgtatacagcaaggataacccaaacctgctctttagca 223 |||||||||| | ||||| ||||| ||||||||||| ||||| || |||||||||| || Sbjct: 3564 aatgggagaacagttttgtgtctgtgtacagcaaggacaaccccaatctgctctttaaca 3623 Query: 224 tgtctgggtttgag 237 ||| ||| |||||| Sbjct: 3624 tgtgtggctttgag 3637 Score = 46.1 bits (23), Expect = 0.084 Identities = 43/50 (86%) Strand = Plus / Plus Query: 289 aaagatggagtatggaacttgcagaatgagcagacanaagaaaggacagc 338 |||||||| || ||||| |||||||||||| ||| ||||||||||||| Sbjct: 3686 aaagatggtgtttggaatttgcagaatgaggtaacaaaagaaaggacagc 3735
>ref|XM_415805.1| PREDICTED: Gallus gallus similar to splicing factor Prp8 (LOC417559), mRNA Length = 7356 Score = 63.9 bits (32), Expect = 4e-07 Identities = 113/140 (80%) Strand = Plus / Plus Query: 4 gagcatcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcct 63 |||||||| ||||| || || |||||||| || || |||||||| ||||| || |||||| Sbjct: 3568 gagcatccagatcccaacaacgagaacattgtaggctacaacaataagaagtgctggcct 3627 Query: 64 agagatgcaagaatgaggctcatgaagcatgatgttaatctgggaagaagtgtattttgg 123 | ||||| | ||| | ||||||||||||||||| || || || | |||||| ||| Sbjct: 3628 cgggatgctcggatgcgcctcatgaagcatgatgtcaaccttggccgtgctgtattctgg 3687 Query: 124 gatatgaagaaccgcctgcc 143 ||||| |||||||||||||| Sbjct: 3688 gatatcaagaaccgcctgcc 3707 Score = 48.1 bits (24), Expect = 0.021 Identities = 60/72 (83%) Strand = Plus / Plus Query: 166 tgggagaatggctttgtctctgtatacagcaaggataacccaaacctgctctttagcatg 225 |||||||| |||| || ||||| ||||||||||||||||| || |||| |||| |||| Sbjct: 3730 tgggagaacagcttcgtgtctgtttacagcaaggataaccccaatttgctgtttaacatg 3789 Query: 226 tctgggtttgag 237 | ||| |||||| Sbjct: 3790 tgtggttttgag 3801
>ref|XM_781872.1| PREDICTED: Strongylocentrotus purpuratus similar to pre-mRNA processing factor 8 (LOC581895), partial mRNA Length = 585 Score = 61.9 bits (31), Expect = 1e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 176 gctttgtctctgtatacagcaaggataacccaaacctgctctt 218 ||||||||||||| |||||||||||||| || ||||||||||| Sbjct: 77 gctttgtctctgtctacagcaaggataatcctaacctgctctt 119
>gb|BC045266.1| Xenopus laevis pre-mRNA processing factor 8, mRNA (cDNA clone MGC:52804 IMAGE:4724870), complete cds Length = 7393 Score = 58.0 bits (29), Expect = 2e-05 Identities = 74/89 (83%) Strand = Plus / Plus Query: 7 catcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcctaga 66 ||||| ||||| ||||||||||| || || || |||||||| || || || ||||| ||| Sbjct: 3432 catccagatcccaataatgagaatattgtgggctacaacaataaaaagtgctggccaaga 3491 Query: 67 gatgcaagaatgaggctcatgaagcatga 95 ||||| |||||| | |||||||| ||||| Sbjct: 3492 gatgccagaatgcgcctcatgaaacatga 3520 Score = 44.1 bits (22), Expect = 0.33 Identities = 34/38 (89%) Strand = Plus / Plus Query: 178 tttgtctctgtatacagcaaggataacccaaacctgct 215 ||||||||||| |||||||| || |||||||| ||||| Sbjct: 3603 tttgtctctgtgtacagcaaagacaacccaaatctgct 3640
>ref|XM_213385.3| PREDICTED: Rattus norvegicus pre-mRNA processing factor 8 (predicted) (Prpf8_predicted), mRNA Length = 7021 Score = 56.0 bits (28), Expect = 9e-05 Identities = 67/80 (83%) Strand = Plus / Plus Query: 19 aataatgagaacatggttggttacaacaacaagaaatgttggcctagagatgcaagaatg 78 |||||||| ||||| ||||| ||||| || |||||||| ||||| ||||||| | ||| Sbjct: 3374 aataatgaaaacattgttggctacaataataagaaatgctggccccgagatgcccgtatg 3433 Query: 79 aggctcatgaagcatgatgt 98 | ||||||||||||||||| Sbjct: 3434 cgtctcatgaagcatgatgt 3453
>ref|XM_511789.1| PREDICTED: Pan troglodytes LOC455021 (LOC455021), mRNA Length = 534 Score = 54.0 bits (27), Expect = 3e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 19 aataatgagaacatggttggttacaacaacaagaaatgttggcctagagatgcaagaatg 78 |||||||| ||||| ||||| ||||| |||||||| || ||||| ||||||| | ||| Sbjct: 82 aataatgaaaacatcgttggctacaataacaagaagtgctggccccgagatgcccgcatg 141 Query: 79 aggctcatgaagcatgatgttaa 101 | |||||||| ||||||||||| Sbjct: 142 cgcctcatgaaacatgatgttaa 164
>ref|XM_451233.1| Kluyveromyces lactis NRRL Y-1140, KLLA0A05280g predicted mRNA Length = 7236 Score = 54.0 bits (27), Expect = 3e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 34 gttggttacaacaacaagaaatgttggcctagaga 68 |||||||| |||||||||||||| ||||||||||| Sbjct: 3598 gttggttataacaacaagaaatgctggcctagaga 3632
>emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome A of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1062590 Score = 54.0 bits (27), Expect = 3e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 34 gttggttacaacaacaagaaatgttggcctagaga 68 |||||||| |||||||||||||| ||||||||||| Sbjct: 472727 gttggttataacaacaagaaatgctggcctagaga 472761
>gb|DQ054784.1| Caenorhabditis remanei PRP8 mRNA, partial cds Length = 580 Score = 54.0 bits (27), Expect = 3e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 7 catcctgatcctaataatgagaacatggttggttacaacaacaagaa 53 ||||||||||| |||||||||||||| ||||| ||||| || ||||| Sbjct: 534 catcctgatccaaataatgagaacatcgttggatacaataataagaa 580
>ref|NM_006445.3| Homo sapiens PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae) (PRPF8), mRNA Length = 7311 Score = 52.0 bits (26), Expect = 0.001 Identities = 80/98 (81%) Strand = Plus / Plus Query: 4 gagcatcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcct 63 ||||| ||||| || |||||||| ||||| ||||| || || |||||||| || ||||| Sbjct: 3460 gagcaccctgaccccaataatgaaaacatcgttggctataataacaagaagtgctggccc 3519 Query: 64 agagatgcaagaatgaggctcatgaagcatgatgttaa 101 ||||||| | ||| | |||||||| ||||||||||| Sbjct: 3520 cgagatgcccgcatgcgcctcatgaaacatgatgttaa 3557
>gb|BC064370.1| Homo sapiens PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae), mRNA (cDNA clone MGC:74762 IMAGE:5587081), complete cds Length = 7276 Score = 52.0 bits (26), Expect = 0.001 Identities = 80/98 (81%) Strand = Plus / Plus Query: 4 gagcatcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcct 63 ||||| ||||| || |||||||| ||||| ||||| || || |||||||| || ||||| Sbjct: 3425 gagcaccctgaccccaataatgaaaacatcgttggctataataacaagaagtgctggccc 3484 Query: 64 agagatgcaagaatgaggctcatgaagcatgatgttaa 101 ||||||| | ||| | |||||||| ||||||||||| Sbjct: 3485 cgagatgcccgcatgcgcctcatgaaacatgatgttaa 3522
>gb|AC130343.7| Homo sapiens chromosome 17, clone RP11-961A15, complete sequence Length = 217253 Score = 52.0 bits (26), Expect = 0.001 Identities = 80/98 (81%) Strand = Plus / Minus Query: 4 gagcatcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcct 63 ||||| ||||| || |||||||| ||||| ||||| || || |||||||| || ||||| Sbjct: 123360 gagcaccctgaccccaataatgaaaacatcgttggctataataacaagaagtgctggccc 123301 Query: 64 agagatgcaagaatgaggctcatgaagcatgatgttaa 101 ||||||| | ||| | |||||||| ||||||||||| Sbjct: 123300 cgagatgcccgcatgcgcctcatgaaacatgatgttaa 123263
>gb|AF092565.1|AF092565 Homo sapiens splicing factor Prp8 mRNA, complete cds Length = 7239 Score = 52.0 bits (26), Expect = 0.001 Identities = 80/98 (81%) Strand = Plus / Plus Query: 4 gagcatcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcct 63 ||||| ||||| || |||||||| ||||| ||||| || || |||||||| || ||||| Sbjct: 3384 gagcaccctgaccccaataatgaaaacatcgttggctataataacaagaagtgctggccc 3443 Query: 64 agagatgcaagaatgaggctcatgaagcatgatgttaa 101 ||||||| | ||| | |||||||| ||||||||||| Sbjct: 3444 cgagatgcccgcatgcgcctcatgaaacatgatgttaa 3481
>emb|BX649099.1|HSM809250 Homo sapiens mRNA; cDNA DKFZp686L08123 (from clone DKFZp686L08123) Length = 11647 Score = 52.0 bits (26), Expect = 0.001 Identities = 80/98 (81%) Strand = Plus / Plus Query: 4 gagcatcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcct 63 ||||| ||||| || |||||||| ||||| ||||| || || |||||||| || ||||| Sbjct: 7789 gagcaccctgaccccaataatgaaaacatcgttggctataataacaagaagtgctggccc 7848 Query: 64 agagatgcaagaatgaggctcatgaagcatgatgttaa 101 ||||||| | ||| | |||||||| ||||||||||| Sbjct: 7849 cgagatgcccgcatgcgcctcatgaaacatgatgttaa 7886
>dbj|AB007510.1| Homo sapiens mRNA for PRP8 protein, complete cds Length = 7221 Score = 52.0 bits (26), Expect = 0.001 Identities = 80/98 (81%) Strand = Plus / Plus Query: 4 gagcatcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcct 63 ||||| ||||| || |||||||| ||||| ||||| || || |||||||| || ||||| Sbjct: 3387 gagcaccctgaccccaataatgaaaacatcgttggctataataacaagaagtgctggccc 3446 Query: 64 agagatgcaagaatgaggctcatgaagcatgatgttaa 101 ||||||| | ||| | |||||||| ||||||||||| Sbjct: 3447 cgagatgcccgcatgcgcctcatgaaacatgatgttaa 3484
>gb|AF397148.1|AF397148 Paramecium tetraurelia macronuclear pre-mRNA processing factor 8 gene, complete cds Length = 8305 Score = 50.1 bits (25), Expect = 0.005 Identities = 97/121 (80%) Strand = Plus / Plus Query: 8 atcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcctagag 67 |||| |||||||||||||| ||||| ||||| || || || |||||||| ||||| | || Sbjct: 4387 atccagatcctaataatgaaaacattgttggatataataataagaaatgctggccaaaag 4446 Query: 68 atgcaagaatgaggctcatgaagcatgatgttaatctgggaagaagtgtattttgggata 127 || |||||||| | ||||| |||||||| ||| | |||||| ||| |||||| ||| Sbjct: 4447 attgcagaatgagattaatgaaacatgatgtaaatttaggaagagctgtcttttggaata 4506 Query: 128 t 128 | Sbjct: 4507 t 4507
>ref|XM_639148.1| Dictyostelium discoideum hypothetical protein (DDB0167592), partial mRNA Length = 6984 Score = 48.1 bits (24), Expect = 0.021 Identities = 48/56 (85%) Strand = Plus / Plus Query: 7 catcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcc 62 ||||| ||||| || ||||| || |||||||||| ||||| |||||||||||||| Sbjct: 3316 catccagatccaaacaatgaaaatgtggttggttataacaataagaaatgttggcc 3371
>ref|XM_744345.1| Aspergillus fumigatus Af293 pre-mRNA splicing factor PRP8 (Afu2g03030) partial mRNA Length = 9513 Score = 48.1 bits (24), Expect = 0.021 Identities = 48/56 (85%) Strand = Plus / Plus Query: 190 tacagcaaggataacccaaacctgctctttagcatgtctgggtttgaggtccgtat 245 ||||||||||| ||||| |||||||| || ||||| ||| |||||||||||||| Sbjct: 3580 tacagcaaggacaacccgaacctgctgttctccatgtgtggctttgaggtccgtat 3635
>gb|AC116956.2| Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence Length = 266544 Score = 48.1 bits (24), Expect = 0.021 Identities = 48/56 (85%) Strand = Plus / Plus Query: 7 catcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcc 62 ||||| ||||| || ||||| || |||||||||| ||||| |||||||||||||| Sbjct: 217857 catccagatccaaacaatgaaaatgtggttggttataacaataagaaatgttggcc 217912
>ref|XM_308873.2| Anopheles gambiae str. PEST ENSANGP00000005722 (ENSANGG00000004351), partial mRNA Length = 7167 Score = 48.1 bits (24), Expect = 0.021 Identities = 84/104 (80%) Strand = Plus / Plus Query: 4 gagcatcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcct 63 |||||||| ||||| || || |||||||| || || |||||||||||||| || ||||| Sbjct: 3502 gagcatccggatccgaacaacgagaacattgtgggctacaacaacaagaagtgctggccg 3561 Query: 64 agagatgcaagaatgaggctcatgaagcatgatgttaatctggg 107 | ||||| | ||| |||| |||||||| || || |||||||| Sbjct: 3562 cgggatgctcgcatgcggctgatgaagcacgacgtcaatctggg 3605
>gb|BC034648.1| Mus musculus pre-mRNA processing factor 8, mRNA (cDNA clone IMAGE:5030478), partial cds Length = 3785 Score = 44.1 bits (22), Expect = 0.33 Identities = 31/34 (91%) Strand = Plus / Plus Query: 65 gagatgcaagaatgaggctcatgaagcatgatgt 98 ||||||| ||||| ||||||||||||||||||| Sbjct: 5 gagatgcccgaatgcggctcatgaagcatgatgt 38
>ref|XM_863390.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 16 (LOC480651), mRNA Length = 7275 Score = 44.1 bits (22), Expect = 0.33 Identities = 46/54 (85%) Strand = Plus / Plus Query: 184 tctgtatacagcaaggataacccaaacctgctctttagcatgtctgggtttgag 237 ||||| ||||| ||||||||||| |||||||| || | ||||| ||| |||||| Sbjct: 3616 tctgtgtacagtaaggataaccccaacctgctgttcaacatgtgtggctttgag 3669
>ref|XM_863387.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 15 (LOC480651), mRNA Length = 7293 Score = 44.1 bits (22), Expect = 0.33 Identities = 46/54 (85%) Strand = Plus / Plus Query: 184 tctgtatacagcaaggataacccaaacctgctctttagcatgtctgggtttgag 237 ||||| ||||| ||||||||||| |||||||| || | ||||| ||| |||||| Sbjct: 3634 tctgtgtacagtaaggataaccccaacctgctgttcaacatgtgtggctttgag 3687
>ref|XM_863384.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 14 (LOC480651), mRNA Length = 7320 Score = 44.1 bits (22), Expect = 0.33 Identities = 46/54 (85%) Strand = Plus / Plus Query: 184 tctgtatacagcaaggataacccaaacctgctctttagcatgtctgggtttgag 237 ||||| ||||| ||||||||||| |||||||| || | ||||| ||| |||||| Sbjct: 3661 tctgtgtacagtaaggataaccccaacctgctgttcaacatgtgtggctttgag 3714
>ref|XM_863379.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 13 (LOC480651), mRNA Length = 7365 Score = 44.1 bits (22), Expect = 0.33 Identities = 46/54 (85%) Strand = Plus / Plus Query: 184 tctgtatacagcaaggataacccaaacctgctctttagcatgtctgggtttgag 237 ||||| ||||| ||||||||||| |||||||| || | ||||| ||| |||||| Sbjct: 3706 tctgtgtacagtaaggataaccccaacctgctgttcaacatgtgtggctttgag 3759
>ref|XM_537770.2| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 1 (LOC480651), mRNA Length = 7329 Score = 44.1 bits (22), Expect = 0.33 Identities = 46/54 (85%) Strand = Plus / Plus Query: 184 tctgtatacagcaaggataacccaaacctgctctttagcatgtctgggtttgag 237 ||||| ||||| ||||||||||| |||||||| || | ||||| ||| |||||| Sbjct: 3670 tctgtgtacagtaaggataaccccaacctgctgttcaacatgtgtggctttgag 3723
>ref|XM_863374.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 12 (LOC480651), mRNA Length = 7281 Score = 44.1 bits (22), Expect = 0.33 Identities = 46/54 (85%) Strand = Plus / Plus Query: 184 tctgtatacagcaaggataacccaaacctgctctttagcatgtctgggtttgag 237 ||||| ||||| ||||||||||| |||||||| || | ||||| ||| |||||| Sbjct: 3622 tctgtgtacagtaaggataaccccaacctgctgttcaacatgtgtggctttgag 3675
>ref|XM_863371.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 11 (LOC480651), mRNA Length = 7284 Score = 44.1 bits (22), Expect = 0.33 Identities = 46/54 (85%) Strand = Plus / Plus Query: 184 tctgtatacagcaaggataacccaaacctgctctttagcatgtctgggtttgag 237 ||||| ||||| ||||||||||| |||||||| || | ||||| ||| |||||| Sbjct: 3625 tctgtgtacagtaaggataaccccaacctgctgttcaacatgtgtggctttgag 3678
>ref|XM_863367.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 10 (LOC480651), mRNA Length = 7260 Score = 44.1 bits (22), Expect = 0.33 Identities = 46/54 (85%) Strand = Plus / Plus Query: 184 tctgtatacagcaaggataacccaaacctgctctttagcatgtctgggtttgag 237 ||||| ||||| ||||||||||| |||||||| || | ||||| ||| |||||| Sbjct: 3601 tctgtgtacagtaaggataaccccaacctgctgttcaacatgtgtggctttgag 3654
>ref|XM_863362.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 9 (LOC480651), mRNA Length = 7287 Score = 44.1 bits (22), Expect = 0.33 Identities = 46/54 (85%) Strand = Plus / Plus Query: 184 tctgtatacagcaaggataacccaaacctgctctttagcatgtctgggtttgag 237 ||||| ||||| ||||||||||| |||||||| || | ||||| ||| |||||| Sbjct: 3628 tctgtgtacagtaaggataaccccaacctgctgttcaacatgtgtggctttgag 3681
>ref|XM_863358.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 8 (LOC480651), mRNA Length = 6884 Score = 44.1 bits (22), Expect = 0.33 Identities = 46/54 (85%) Strand = Plus / Plus Query: 184 tctgtatacagcaaggataacccaaacctgctctttagcatgtctgggtttgag 237 ||||| ||||| ||||||||||| |||||||| || | ||||| ||| |||||| Sbjct: 3622 tctgtgtacagtaaggataaccccaacctgctgttcaacatgtgtggctttgag 3675
>ref|XM_863355.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 7 (LOC480651), mRNA Length = 6153 Score = 44.1 bits (22), Expect = 0.33 Identities = 46/54 (85%) Strand = Plus / Plus Query: 184 tctgtatacagcaaggataacccaaacctgctctttagcatgtctgggtttgag 237 ||||| ||||| ||||||||||| |||||||| || | ||||| ||| |||||| Sbjct: 3622 tctgtgtacagtaaggataaccccaacctgctgttcaacatgtgtggctttgag 3675
>ref|XM_863352.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 6 (LOC480651), mRNA Length = 6429 Score = 44.1 bits (22), Expect = 0.33 Identities = 46/54 (85%) Strand = Plus / Plus Query: 184 tctgtatacagcaaggataacccaaacctgctctttagcatgtctgggtttgag 237 ||||| ||||| ||||||||||| |||||||| || | ||||| ||| |||||| Sbjct: 3622 tctgtgtacagtaaggataaccccaacctgctgttcaacatgtgtggctttgag 3675
>ref|XM_863350.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 5 (LOC480651), mRNA Length = 4774 Score = 44.1 bits (22), Expect = 0.33 Identities = 46/54 (85%) Strand = Plus / Plus Query: 184 tctgtatacagcaaggataacccaaacctgctctttagcatgtctgggtttgag 237 ||||| ||||| ||||||||||| |||||||| || | ||||| ||| |||||| Sbjct: 3622 tctgtgtacagtaaggataaccccaacctgctgttcaacatgtgtggctttgag 3675
>ref|XM_863345.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 3 (LOC480651), mRNA Length = 6993 Score = 44.1 bits (22), Expect = 0.33 Identities = 46/54 (85%) Strand = Plus / Plus Query: 184 tctgtatacagcaaggataacccaaacctgctctttagcatgtctgggtttgag 237 ||||| ||||| ||||||||||| |||||||| || | ||||| ||| |||||| Sbjct: 3622 tctgtgtacagtaaggataaccccaacctgctgttcaacatgtgtggctttgag 3675
>ref|XM_849291.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 2 (LOC480651), mRNA Length = 7281 Score = 44.1 bits (22), Expect = 0.33 Identities = 46/54 (85%) Strand = Plus / Plus Query: 184 tctgtatacagcaaggataacccaaacctgctctttagcatgtctgggtttgag 237 ||||| ||||| ||||||||||| |||||||| || | ||||| ||| |||||| Sbjct: 3622 tctgtgtacagtaaggataaccccaacctgctgttcaacatgtgtggctttgag 3675
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 gaagaagtgtattttgggata 127 ||||||||||||||||||||| Sbjct: 3877233 gaagaagtgtattttgggata 3877213
>ref|XM_359533.1| Magnaporthe grisea 70-15 hypothetical protein (MG05244.4) partial mRNA Length = 7110 Score = 42.1 bits (21), Expect = 1.3 Identities = 45/53 (84%) Strand = Plus / Plus Query: 35 ttggttacaacaacaagaaatgttggcctagagatgcaagaatgaggctcatg 87 |||||||||| | |||||||| ||||| | |||||||| |||||||||||| Sbjct: 3482 ttggttacaagacaaagaaatgctggccccgtgatgcaaggatgaggctcatg 3534
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 gaagaagtgtattttgggata 127 ||||||||||||||||||||| Sbjct: 3897877 gaagaagtgtattttgggata 3897857
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 gaagaagtgtattttgggata 127 ||||||||||||||||||||| Sbjct: 3898250 gaagaagtgtattttgggata 3898230
>ref|XM_661701.1| Cryptosporidium hominis TU502 ENSANGP00000005722 (Chro.30328) partial mRNA Length = 7026 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 142 ccaaggagtattactacattagaatggga 170 |||| |||||| ||||||||||||||||| Sbjct: 3457 ccaaagagtataactacattagaatggga 3485
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 gaagaagtgtattttgggata 127 ||||||||||||||||||||| Sbjct: 3934251 gaagaagtgtattttgggata 3934231
>emb|BX572092.1| Prochlorococcus marinus MED4 complete genome; segment 3/5 Length = 348178 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 359 atgatgaacacatgaaggtgt 379 ||||||||||||||||||||| Sbjct: 152044 atgatgaacacatgaaggtgt 152024
>ref|XM_626847.1| Cryptosporidium parvum Iowa II Prp8. JAB/PAD domain (cgd3_2890), partial mRNA Length = 7140 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 142 ccaaggagtattactacattagaatggga 170 |||| |||||| ||||||||||||||||| Sbjct: 3457 ccaaagagtataactacattagaatggga 3485
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 gaagaagtgtattttgggata 127 ||||||||||||||||||||| Sbjct: 3897750 gaagaagtgtattttgggata 3897730
>gb|AC087101.2| Rattus norvegicus strain Brown Norway clone RP31-230B14, complete sequence Length = 27615 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 acaacaacaagaaatgttgg 60 |||||||||||||||||||| Sbjct: 10871 acaacaacaagaaatgttgg 10852
>gb|AC087041.2| Rattus norvegicus strain Brown Norway clone RP31-188L2, complete sequence Length = 123260 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 acaacaacaagaaatgttgg 60 |||||||||||||||||||| Sbjct: 1151 acaacaacaagaaatgttgg 1132
>gb|AC161176.5| Mus musculus chromosome 5, clone RP24-295A5, complete sequence Length = 157001 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 aagaaatgttggcctagaga 68 |||||||||||||||||||| Sbjct: 11510 aagaaatgttggcctagaga 11491
>gb|AC125402.3| Mus musculus BAC clone RP24-539G2 from chromosome 5, complete sequence Length = 163773 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 aagaaatgttggcctagaga 68 |||||||||||||||||||| Sbjct: 122123 aagaaatgttggcctagaga 122104
>gb|AC125037.4| Mus musculus BAC clone RP23-332H20 from chromosome 3, complete sequence Length = 207842 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 catgtctgggtttgaggtcc 241 |||||||||||||||||||| Sbjct: 66851 catgtctgggtttgaggtcc 66870
>gb|AC004894.1| Homo sapiens PAC clone RP4-808G16 from 7, complete sequence Length = 164511 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 cctgctctttagcatgtctg 229 |||||||||||||||||||| Sbjct: 47560 cctgctctttagcatgtctg 47541
>emb|AL357522.10| Human DNA sequence from clone RP11-685G11 on chromosome 6 Contains two CpG islands, complete sequence Length = 124506 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 tgatgaacacatgaaggtgt 379 |||||||||||||||||||| Sbjct: 2173 tgatgaacacatgaaggtgt 2192
>gb|AC106947.5| Rattus norvegicus 1 BAC CH230-19C12 (Children's Hospital Oakland Research Institute) complete sequence Length = 217589 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 ttgtctctgtatacagcaag 198 |||||||||||||||||||| Sbjct: 112035 ttgtctctgtatacagcaag 112016
>gb|AC096070.7| Rattus norvegicus 4 BAC CH230-20J7 (Children's Hospital Oakland Research Institute) complete sequence Length = 231332 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 acaacaacaagaaatgttgg 60 |||||||||||||||||||| Sbjct: 70469 acaacaacaagaaatgttgg 70488
>gb|AC166286.14| Medicago truncatula clone mth2-173c1, complete sequence Length = 114609 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 349 ttgaggggtgatgatgaacacatgaagg 376 |||| |||| |||||||||||||||||| Sbjct: 100817 ttgaagggttatgatgaacacatgaagg 100844
>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold Length = 1888123 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 acaacaacaagaaatgttgg 60 |||||||||||||||||||| Sbjct: 577937 acaacaacaagaaatgttgg 577918
>emb|BX957242.15| Zebrafish DNA sequence from clone CH211-129B17 in linkage group 19, complete sequence Length = 167629 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 76 atgaggctcatgaagcatgatgtt 99 |||||||| ||||||||||||||| Sbjct: 110872 atgaggctgatgaagcatgatgtt 110849
>emb|AL136308.4| Human DNA sequence from clone RP3-382L22 on chromosome 7 Contains STSs and GSSs, complete sequence Length = 86832 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 cctgctctttagcatgtctg 229 |||||||||||||||||||| Sbjct: 67468 cctgctctttagcatgtctg 67449 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,110,682 Number of Sequences: 3902068 Number of extensions: 4110682 Number of successful extensions: 75208 Number of sequences better than 10.0: 83 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 74906 Number of HSP's gapped (non-prelim): 298 length of query: 389 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 367 effective length of database: 17,147,199,772 effective search space: 6293022316324 effective search space used: 6293022316324 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
