>PCF11_HUMAN (O94913) Pre-mRNA cleavage complex 2 protein Pcf11 (Pre-mRNA|
           cleavage complex II protein Pcf11) (Fragment)
          Length = 1654

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 25/63 (39%), Positives = 35/63 (55%)
 Frame = +1

Query: 199 YKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYLLDSI 378
           Y+ +L +LTFN KP I  LTI+A ++                 + P  +KLP +YL+DSI
Sbjct: 121 YQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEAQTA-KAPSSEKLPVMYLMDSI 179

Query: 379 VKN 387
           VKN
Sbjct: 180 VKN 182

>YD14_SCHPO (Q10237) Hypothetical protein C4G9.04c in chromosome I|
          Length = 638

 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 29/63 (46%), Positives = 32/63 (50%)
 Frame = +1

Query: 199 YKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYLLDSI 378
           Y  AL +LTFN KPII  LT IA Q                  + P   KLP+LYLLDSI
Sbjct: 8   YLSALEDLTFNSKPIIHTLTYIA-QENEPYAISIVNAIEKHIQKCPPNCKLPALYLLDSI 66

Query: 379 VKN 387
            KN
Sbjct: 67  SKN 69

>PCF11_YEAST (P39081) Protein PCF11 (protein 1 of CF I)|
          Length = 626

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 25/67 (37%), Positives = 34/67 (50%)
 Frame = +1

Query: 187 VVGVYKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYL 366
           +V  +   L ELTFN +PIIT LT +A ++                  +P +QKL + Y 
Sbjct: 8   IVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMP-KQKLYAFYA 66

Query: 367 LDSIVKN 387
           LDSI KN
Sbjct: 67  LDSICKN 73

>YRR2_CAEEL (Q09345) Hypothetical protein R144.2|
          Length = 823

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 23/63 (36%), Positives = 28/63 (44%)
 Frame = +1

Query: 199 YKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYLLDSI 378
           Y+E LAEL  N K  I  LTI+A                      P  QKL  +Y+ DSI
Sbjct: 11  YRETLAELRNNNKTQINLLTILADDFKKAAPQIVEVIERHLTTCSP-SQKLLVMYVCDSI 69

Query: 379 VKN 387
           +KN
Sbjct: 70  LKN 72

>MASY_GOSHI (P17432) Malate synthase, glyoxysomal (EC 2.3.3.9)|
          Length = 567

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 112 VVGQVVERFRARLREEAGEEPKAAAVVGVYKEALAELTFNC 234
           V G+VVE   AR+  E G+E       G+YKEA    T  C
Sbjct: 501 VFGRVVEEEMARIEREVGKEKFKK---GMYKEACKIFTRQC 538


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,544,395
Number of Sequences: 219361
Number of extensions: 354588
Number of successful extensions: 995
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)