ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl16e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 60 2e-06
2dbj|AP005560.3| Oryza sativa (japonica cultivar-group) genomic D... 60 2e-06
3dbj|AK099930.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 2e-06
4gb|AY105796.1| Zea mays PCO081368 mRNA sequence 40 2.2
5ref|NM_172067.1| Rattus norvegicus spondin 1 (Spon1), mRNA 38 8.8
6gb|M88469.1|RATFSAA Rattus norvegicus f-spondin mRNA, complete cds 38 8.8
7gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 38 8.8
8gb|AY258009.2| Streptomyces clavuligerus clavulanic acid biosynt... 38 8.8
9emb|CR732296.2|CNS0GRZH Tetraodon nigroviridis full-length cDNA 38 8.8
10gb|AC175711.3| Pan troglodytes BAC clone CH251-100H6 from chromo... 38 8.8
11emb|AL356752.13| Human DNA sequence from clone RP11-73M11 on chr... 38 8.8
12gb|CP000088.1| Thermobifida fusca YX, complete genome 38 8.8
13gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 geno... 38 8.8
14gb|AY034175.1| Streptomyces clavuligerus clavulanic acid gene cl... 38 8.8
15gb|AC105114.3| Homo sapiens chromosome 18, clone CTD-2576N18, co... 38 8.8
16gb|AC161617.4| Pan troglodytes BAC clone CH251-548L6 from chromo... 38 8.8
17dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.8
18ref|XM_579693.1| PREDICTED: Rattus norvegicus spondin 1 (Spon1),... 38 8.8
19emb|BX511203.3| Rattus norvegicus chromosome 1 clone RN-79C10, c... 38 8.8
20gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 38 8.8
21gb|BC107655.1| Rattus norvegicus spondin 1, mRNA (cDNA clone MGC... 38 8.8

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                                 
Query: 62      ccatgaaaggccgcgcggttaagcttcgggaggcgcacaaggcgggctcg 111
               |||||||||| |||||||| ||||| || |||||||||||||| ||||||
Sbjct: 3065642 ccatgaaagggcgcgcggtgaagctccgagaggcgcacaaggccggctcg 3065691



 Score = 38.2 bits (19), Expect = 8.8
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                          
Query: 154     cagcacgtcgtcaccgcgtccgccgcc 180
               ||||| ||||||||||| |||||||||
Sbjct: 3065728 cagcatgtcgtcaccgcatccgccgcc 3065754



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>dbj|AP005560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1178_D01
          Length = 121768

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                               
Query: 62    ccatgaaaggccgcgcggttaagcttcgggaggcgcacaaggcgggctcg 111
             |||||||||| |||||||| ||||| || |||||||||||||| ||||||
Sbjct: 85608 ccatgaaagggcgcgcggtgaagctccgagaggcgcacaaggccggctcg 85657



 Score = 38.2 bits (19), Expect = 8.8
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 154   cagcacgtcgtcaccgcgtccgccgcc 180
             ||||| ||||||||||| |||||||||
Sbjct: 85694 cagcatgtcgtcaccgcatccgccgcc 85720



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>dbj|AK099930.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118L18, full
            insert sequence
          Length = 3398

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 62   ccatgaaaggccgcgcggttaagcttcgggaggcgcacaaggcgggctcg 111
            |||||||||| |||||||| ||||| || |||||||||||||| ||||||
Sbjct: 2488 ccatgaaagggcgcgcggtgaagctccgagaggcgcacaaggccggctcg 2439



 Score = 38.2 bits (19), Expect = 8.8
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 154  cagcacgtcgtcaccgcgtccgccgcc 180
            ||||| ||||||||||| |||||||||
Sbjct: 2402 cagcatgtcgtcaccgcatccgccgcc 2376



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>gb|AY105796.1| Zea mays PCO081368 mRNA sequence
          Length = 544

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 94  gcgcacaaggcgggctcgggctcc 117
           ||||||||||||| ||||||||||
Sbjct: 86  gcgcacaaggcggcctcgggctcc 109



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>ref|NM_172067.1| Rattus norvegicus spondin 1 (Spon1), mRNA
          Length = 4029

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 101 aggcgggctcgggctcccc 119
           |||||||||||||||||||
Sbjct: 91  aggcgggctcgggctcccc 109



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>gb|M88469.1|RATFSAA Rattus norvegicus f-spondin mRNA, complete cds
          Length = 4029

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 101 aggcgggctcgggctcccc 119
           |||||||||||||||||||
Sbjct: 91  aggcgggctcgggctcccc 109



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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 91      gaggcgcacaaggcgggct 109
               |||||||||||||||||||
Sbjct: 1038856 gaggcgcacaaggcgggct 1038874



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>gb|AY258009.2| Streptomyces clavuligerus clavulanic acid biosynthetic gene cluster,
            partial sequence
          Length = 13901

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 162  cgtcaccgcgtccgccgcc 180
            |||||||||||||||||||
Sbjct: 6647 cgtcaccgcgtccgccgcc 6665



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>emb|CR732296.2|CNS0GRZH Tetraodon nigroviridis full-length cDNA
          Length = 1274

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 135 cgcctggtcccccggggga 153
           |||||||||||||||||||
Sbjct: 951 cgcctggtcccccggggga 969



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>gb|AC175711.3| Pan troglodytes BAC clone CH251-100H6 from chromosome unknown, complete
              sequence
          Length = 169508

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 105    gggctcgggctccccggcc 123
              |||||||||||||||||||
Sbjct: 132775 gggctcgggctccccggcc 132757



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>emb|AL356752.13| Human DNA sequence from clone RP11-73M11 on chromosome 13 Contains part
             of the ATP11A gene for ATPase Class VI type 11A (ATPIH
             ATPIS KIAA1021), a novel gene and four CpG islands,
             complete sequence
          Length = 143517

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 105   gggctcgggctccccggcc 123
             |||||||||||||||||||
Sbjct: 85567 gggctcgggctccccggcc 85549



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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 147     cgggggacagcacgtcgtc 165
               |||||||||||||||||||
Sbjct: 1146657 cgggggacagcacgtcgtc 1146639



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>gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 genomic sequence, complete
              sequence
          Length = 162339

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 9      ccatcagctcaccaagaaa 27
              |||||||||||||||||||
Sbjct: 147535 ccatcagctcaccaagaaa 147517



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>gb|AY034175.1| Streptomyces clavuligerus clavulanic acid gene cluster, partial
            sequence
          Length = 12162

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 162  cgtcaccgcgtccgccgcc 180
            |||||||||||||||||||
Sbjct: 8154 cgtcaccgcgtccgccgcc 8172



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>gb|AC105114.3| Homo sapiens chromosome 18, clone CTD-2576N18, complete sequence
          Length = 167827

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 1      acgaaatcccatcagctcaccaa 23
              |||||| ||||||||||||||||
Sbjct: 123818 acgaaaccccatcagctcaccaa 123840



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>gb|AC161617.4| Pan troglodytes BAC clone CH251-548L6 from chromosome unknown, complete
             sequence
          Length = 218767

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 105   gggctcgggctccccggcc 123
             |||||||||||||||||||
Sbjct: 64053 gggctcgggctccccggcc 64071



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 9        ccatcagctcaccaagaaa 27
                |||||||||||||||||||
Sbjct: 16803018 ccatcagctcaccaagaaa 16803000



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>ref|XM_579693.1| PREDICTED: Rattus norvegicus spondin 1 (Spon1), mRNA
          Length = 4031

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 101 aggcgggctcgggctcccc 119
           |||||||||||||||||||
Sbjct: 91  aggcgggctcgggctcccc 109



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>emb|BX511203.3| Rattus norvegicus chromosome 1 clone RN-79C10, complete sequence
          Length = 157310

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 101   aggcgggctcgggctcccc 119
             |||||||||||||||||||
Sbjct: 71906 aggcgggctcgggctcccc 71888



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 9        ccatcagctcaccaagaaa 27
                |||||||||||||||||||
Sbjct: 16812058 ccatcagctcaccaagaaa 16812040



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>gb|BC107655.1| Rattus norvegicus spondin 1, mRNA (cDNA clone MGC:124557
           IMAGE:7935103), complete cds
          Length = 4109

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 101 aggcgggctcgggctcccc 119
           |||||||||||||||||||
Sbjct: 168 aggcgggctcgggctcccc 186


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 879,344
Number of Sequences: 3902068
Number of extensions: 879344
Number of successful extensions: 56184
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55959
Number of HSP's gapped (non-prelim): 225
length of query: 180
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 158
effective length of database: 17,147,199,772
effective search space: 2709257563976
effective search space used: 2709257563976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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