Clone Name | bastl16e12 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 60.0 bits (30), Expect = 2e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 62 ccatgaaaggccgcgcggttaagcttcgggaggcgcacaaggcgggctcg 111 |||||||||| |||||||| ||||| || |||||||||||||| |||||| Sbjct: 3065642 ccatgaaagggcgcgcggtgaagctccgagaggcgcacaaggccggctcg 3065691 Score = 38.2 bits (19), Expect = 8.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 154 cagcacgtcgtcaccgcgtccgccgcc 180 ||||| ||||||||||| ||||||||| Sbjct: 3065728 cagcatgtcgtcaccgcatccgccgcc 3065754
>dbj|AP005560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1178_D01 Length = 121768 Score = 60.0 bits (30), Expect = 2e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 62 ccatgaaaggccgcgcggttaagcttcgggaggcgcacaaggcgggctcg 111 |||||||||| |||||||| ||||| || |||||||||||||| |||||| Sbjct: 85608 ccatgaaagggcgcgcggtgaagctccgagaggcgcacaaggccggctcg 85657 Score = 38.2 bits (19), Expect = 8.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 154 cagcacgtcgtcaccgcgtccgccgcc 180 ||||| ||||||||||| ||||||||| Sbjct: 85694 cagcatgtcgtcaccgcatccgccgcc 85720
>dbj|AK099930.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118L18, full insert sequence Length = 3398 Score = 60.0 bits (30), Expect = 2e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 62 ccatgaaaggccgcgcggttaagcttcgggaggcgcacaaggcgggctcg 111 |||||||||| |||||||| ||||| || |||||||||||||| |||||| Sbjct: 2488 ccatgaaagggcgcgcggtgaagctccgagaggcgcacaaggccggctcg 2439 Score = 38.2 bits (19), Expect = 8.8 Identities = 25/27 (92%) Strand = Plus / Minus Query: 154 cagcacgtcgtcaccgcgtccgccgcc 180 ||||| ||||||||||| ||||||||| Sbjct: 2402 cagcatgtcgtcaccgcatccgccgcc 2376
>gb|AY105796.1| Zea mays PCO081368 mRNA sequence Length = 544 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 gcgcacaaggcgggctcgggctcc 117 ||||||||||||| |||||||||| Sbjct: 86 gcgcacaaggcggcctcgggctcc 109
>ref|NM_172067.1| Rattus norvegicus spondin 1 (Spon1), mRNA Length = 4029 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 101 aggcgggctcgggctcccc 119 ||||||||||||||||||| Sbjct: 91 aggcgggctcgggctcccc 109
>gb|M88469.1|RATFSAA Rattus norvegicus f-spondin mRNA, complete cds Length = 4029 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 101 aggcgggctcgggctcccc 119 ||||||||||||||||||| Sbjct: 91 aggcgggctcgggctcccc 109
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 gaggcgcacaaggcgggct 109 ||||||||||||||||||| Sbjct: 1038856 gaggcgcacaaggcgggct 1038874
>gb|AY258009.2| Streptomyces clavuligerus clavulanic acid biosynthetic gene cluster, partial sequence Length = 13901 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 162 cgtcaccgcgtccgccgcc 180 ||||||||||||||||||| Sbjct: 6647 cgtcaccgcgtccgccgcc 6665
>emb|CR732296.2|CNS0GRZH Tetraodon nigroviridis full-length cDNA Length = 1274 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 135 cgcctggtcccccggggga 153 ||||||||||||||||||| Sbjct: 951 cgcctggtcccccggggga 969
>gb|AC175711.3| Pan troglodytes BAC clone CH251-100H6 from chromosome unknown, complete sequence Length = 169508 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 105 gggctcgggctccccggcc 123 ||||||||||||||||||| Sbjct: 132775 gggctcgggctccccggcc 132757
>emb|AL356752.13| Human DNA sequence from clone RP11-73M11 on chromosome 13 Contains part of the ATP11A gene for ATPase Class VI type 11A (ATPIH ATPIS KIAA1021), a novel gene and four CpG islands, complete sequence Length = 143517 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 105 gggctcgggctccccggcc 123 ||||||||||||||||||| Sbjct: 85567 gggctcgggctccccggcc 85549
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 147 cgggggacagcacgtcgtc 165 ||||||||||||||||||| Sbjct: 1146657 cgggggacagcacgtcgtc 1146639
>gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 genomic sequence, complete sequence Length = 162339 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 ccatcagctcaccaagaaa 27 ||||||||||||||||||| Sbjct: 147535 ccatcagctcaccaagaaa 147517
>gb|AY034175.1| Streptomyces clavuligerus clavulanic acid gene cluster, partial sequence Length = 12162 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 162 cgtcaccgcgtccgccgcc 180 ||||||||||||||||||| Sbjct: 8154 cgtcaccgcgtccgccgcc 8172
>gb|AC105114.3| Homo sapiens chromosome 18, clone CTD-2576N18, complete sequence Length = 167827 Score = 38.2 bits (19), Expect = 8.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 1 acgaaatcccatcagctcaccaa 23 |||||| |||||||||||||||| Sbjct: 123818 acgaaaccccatcagctcaccaa 123840
>gb|AC161617.4| Pan troglodytes BAC clone CH251-548L6 from chromosome unknown, complete sequence Length = 218767 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 105 gggctcgggctccccggcc 123 ||||||||||||||||||| Sbjct: 64053 gggctcgggctccccggcc 64071
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 ccatcagctcaccaagaaa 27 ||||||||||||||||||| Sbjct: 16803018 ccatcagctcaccaagaaa 16803000
>ref|XM_579693.1| PREDICTED: Rattus norvegicus spondin 1 (Spon1), mRNA Length = 4031 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 101 aggcgggctcgggctcccc 119 ||||||||||||||||||| Sbjct: 91 aggcgggctcgggctcccc 109
>emb|BX511203.3| Rattus norvegicus chromosome 1 clone RN-79C10, complete sequence Length = 157310 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 101 aggcgggctcgggctcccc 119 ||||||||||||||||||| Sbjct: 71906 aggcgggctcgggctcccc 71888
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 ccatcagctcaccaagaaa 27 ||||||||||||||||||| Sbjct: 16812058 ccatcagctcaccaagaaa 16812040
>gb|BC107655.1| Rattus norvegicus spondin 1, mRNA (cDNA clone MGC:124557 IMAGE:7935103), complete cds Length = 4109 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 101 aggcgggctcgggctcccc 119 ||||||||||||||||||| Sbjct: 168 aggcgggctcgggctcccc 186 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 879,344 Number of Sequences: 3902068 Number of extensions: 879344 Number of successful extensions: 56184 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55959 Number of HSP's gapped (non-prelim): 225 length of query: 180 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 158 effective length of database: 17,147,199,772 effective search space: 2709257563976 effective search space used: 2709257563976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)