ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl16e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CLCD_RHOOP (O67988) Carboxymethylenebutenolidase (EC 3.1.1.45) (... 28 7.5
2ODPX_HUMAN (O00330) Pyruvate dehydrogenase protein X component, ... 28 7.5
3PTH_YEAST (P38876) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH) 27 9.8

>CLCD_RHOOP (O67988) Carboxymethylenebutenolidase (EC 3.1.1.45) (Dienelactone|
           hydrolase) (DLH)
          Length = 252

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 54  HHQTPAPTAHLAISGDRRRCPGLDPNPY 137
           H+++ AP     IS  + R PG DP PY
Sbjct: 3   HNKSSAPPTPAHISIQQNRTPGTDPVPY 30



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>ODPX_HUMAN (O00330) Pyruvate dehydrogenase protein X component, mitochondrial|
           precursor (Dihydrolipoamide dehydrogenase-binding
           protein of pyruvate dehydrogenase complex)
           (Lipoyl-containing pyruvate dehydrogenase complex
           component X) (E3-binding protein)
          Length = 501

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 9   ALNPIR*RKSGKQTSHHQTPAPTAHLAISGDRRRCPGLD-PNPYPAPITTRG 161
           AL  ++ +++GK T    TPAPTA        +   G   P P   P++T G
Sbjct: 216 ALKLVQLKQTGKITESRPTPAPTATPTAPSPLQATAGPSYPRPVIPPVSTPG 267



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>PTH_YEAST (P38876) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)|
          Length = 190

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -1

Query: 133 GLGSRPGQRRRSP-EMARWAVGA 68
           G+G  PG R R P  ++RW +GA
Sbjct: 142 GIGREPGSRSRDPASVSRWVLGA 164


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,288,455
Number of Sequences: 219361
Number of extensions: 403220
Number of successful extensions: 1297
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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