ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl16e08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK102482.1| Oryza sativa (japonica cultivar-group) cDNA clon... 341 9e-91
2dbj|AK073748.1| Oryza sativa (japonica cultivar-group) cDNA clon... 341 9e-91
3gb|AC134927.2| Oryza sativa (japonica cultivar-group) chromosome... 206 4e-50
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 206 4e-50
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.078
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.078
7emb|AL713928.3|CNS07YP5 Oryza sativa chromosome 12, . BAC OSJNBa... 46 0.078
8emb|AL513189.13| Human DNA sequence from clone RP11-339I11 on ch... 44 0.31
9ref|XM_465482.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.2
10ref|NM_196010.1| Oryza sativa (japonica cultivar-group) hypothet... 42 1.2
11gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
12gb|AC145396.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
13gb|AC167227.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
14emb|AL358793.14| Human DNA sequence from clone RP11-19M4 on chro... 42 1.2
15emb|BX883046.1| Rattus norvegicus chromosome 20, major histocomp... 42 1.2
16emb|AJ314857.1|RNO314857 Rattus norvegicus Nfkbil1 gene (partial... 42 1.2
17gb|AC093093.5| Oryza sativa chromosome 10 BAC OSJNBb0076H04 geno... 42 1.2
18gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, c... 42 1.2
19gb|AC090056.2|AC090056 Oryza sativa chromosome 9 clone PAC0663H0... 42 1.2
20gb|AC079038.3|AC079038 Oryza sativa chromosome 7 clone OSJNBb002... 42 1.2
21dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
22dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
23dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
24dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
25dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
26dbj|AP005705.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
27dbj|AP006758.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
28dbj|AP005833.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
29dbj|AP005895.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
30dbj|AP005068.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
31gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
32ref|NM_125064.1| Arabidopsis thaliana unknown protein AT5G56810 ... 40 4.8
33gb|AF443599.1| Zea mays enhancer of polycomb-like protein (epc10... 40 4.8
34gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete g... 40 4.8
35ref|XM_480765.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.8
36gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 40 4.8
37gb|AC162459.2| Mus musculus chromosome 3, clone RP23-80A8, compl... 40 4.8
38gb|CP000088.1| Thermobifida fusca YX, complete genome 40 4.8
39gb|AC073392.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.8
40gb|AC078944.5|AC078944 Genomic Sequence for Oryza sativa, Nippon... 40 4.8
41dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
42dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
43dbj|AP004667.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
44dbj|AP005583.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
45dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
46dbj|AP003799.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
47dbj|AB117723.1| Rhodococcus rhodochrous orf51, bphC5, orf52, orf... 40 4.8
48dbj|AP005533.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
49dbj|AB013392.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 4.8
50dbj|AP004751.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
51dbj|AK071243.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.8
52dbj|AK068908.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.8
53gb|AC102012.7| Mus musculus chromosome 3, clone RP24-542B2, comp... 40 4.8
54gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 4.8
55emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa... 40 4.8
56emb|BX255875.3|CNS09S4W Oryza sativa chromosome 12, . BAC OSJNBa... 40 4.8
57emb|AL157756.3|CNS01RG4 Human chromosome 14 DNA sequence BAC C-2... 40 4.8 
>dbj|AK102482.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094L12, full
           insert sequence
          Length = 2770

 Score =  341 bits (172), Expect = 9e-91
 Identities = 256/284 (90%)
 Strand = Plus / Plus

                                                                       
Query: 79  atggccagcaagttcgggctcgccggcggaatcccggagcggcgggtgcggccgatctgg 138
           ||||| |||||||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 132 atggcaagcaagttcgggctcgccgggggcatcccggagaggcgggtgcggccgatctgg 191

                                                                       
Query: 139 gacgccgtcgactcgcgacagtacaaggccgcgctcaagctctgcacctcgctcctcgcc 198
           ||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 192 gacgccgtcgactcgcgccagtacaaggctgcgctcaagctctgcaccgcgctcctcgcc 251

                                                                       
Query: 199 aagcaccccacctcaccctacgccctcgctctcaaggctcttactttggaaaggatggga 258
           |||||||| ||||| || |||| |||||||||||||| ||||| ||||||||||||||||
Sbjct: 252 aagcacccgacctccccttacgtcctcgctctcaagggtcttattttggaaaggatggga 311

                                                                       
Query: 259 aagcctgatgaagcactgactgtctgtttgaatgccaaggagctattgtactcgaataac 318
           ||||||||||||||||| | ||| |||||||||||||||||||  ||||| ||  | |||
Sbjct: 312 aagcctgatgaagcactcagtgtgtgtttgaatgccaaggagcagttgtattctgacaac 371

                                                       
Query: 319 attttccattttgacgatctcacccttagcacactacagatagt 362
           || || |||||||| |||||||| |||||||| || ||||||||
Sbjct: 372 atctttcattttgatgatctcactcttagcaccctgcagatagt 415



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 45 aaaccctaaccctagatcgtgaggg 69
          ||||||||||||||||||| |||||
Sbjct: 73 aaaccctaaccctagatcgcgaggg 97
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>dbj|AK073748.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066L16, full
           insert sequence
          Length = 3317

 Score =  341 bits (172), Expect = 9e-91
 Identities = 256/284 (90%)
 Strand = Plus / Plus

                                                                       
Query: 79  atggccagcaagttcgggctcgccggcggaatcccggagcggcgggtgcggccgatctgg 138
           ||||| |||||||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 133 atggcaagcaagttcgggctcgccgggggcatcccggagaggcgggtgcggccgatctgg 192

                                                                       
Query: 139 gacgccgtcgactcgcgacagtacaaggccgcgctcaagctctgcacctcgctcctcgcc 198
           ||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 193 gacgccgtcgactcgcgccagtacaaggctgcgctcaagctctgcaccgcgctcctcgcc 252

                                                                       
Query: 199 aagcaccccacctcaccctacgccctcgctctcaaggctcttactttggaaaggatggga 258
           |||||||| ||||| || |||| |||||||||||||| ||||| ||||||||||||||||
Sbjct: 253 aagcacccgacctccccttacgtcctcgctctcaagggtcttattttggaaaggatggga 312

                                                                       
Query: 259 aagcctgatgaagcactgactgtctgtttgaatgccaaggagctattgtactcgaataac 318
           ||||||||||||||||| | ||| |||||||||||||||||||  ||||| ||  | |||
Sbjct: 313 aagcctgatgaagcactcagtgtgtgtttgaatgccaaggagcagttgtattctgacaac 372

                                                       
Query: 319 attttccattttgacgatctcacccttagcacactacagatagt 362
           || || |||||||| |||||||| |||||||| || ||||||||
Sbjct: 373 atctttcattttgatgatctcactcttagcaccctgcagatagt 416



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 45 aaaccctaaccctagatcgtgaggg 69
          ||||||||||||||||||| |||||
Sbjct: 74 aaaccctaaccctagatcgcgaggg 98
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>gb|AC134927.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1036C05,
             complete sequence
          Length = 143400

 Score =  206 bits (104), Expect = 4e-50
 Identities = 137/148 (92%)
 Strand = Plus / Minus

                                                                         
Query: 79    atggccagcaagttcgggctcgccggcggaatcccggagcggcgggtgcggccgatctgg 138
             ||||| |||||||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 80568 atggcaagcaagttcgggctcgccgggggcatcccggagaggcgggtgcggccgatctgg 80509

                                                                         
Query: 139   gacgccgtcgactcgcgacagtacaaggccgcgctcaagctctgcacctcgctcctcgcc 198
             ||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 80508 gacgccgtcgactcgcgccagtacaaggctgcgctcaagctctgcaccgcgctcctcgcc 80449

                                         
Query: 199   aagcaccccacctcaccctacgccctcg 226
             |||||||| ||||| || |||| |||||
Sbjct: 80448 aagcacccgacctccccttacgtcctcg 80421



 Score =  137 bits (69), Expect = 3e-29
 Identities = 120/137 (87%)
 Strand = Plus / Minus

                                                                         
Query: 226   gctctcaaggctcttactttggaaaggatgggaaagcctgatgaagcactgactgtctgt 285
             |||||||||| ||||| ||||||||||||||||||||||||||||||||| | ||| |||
Sbjct: 79077 gctctcaagggtcttattttggaaaggatgggaaagcctgatgaagcactcagtgtgtgt 79018

                                                                         
Query: 286   ttgaatgccaaggagctattgtactcgaataacattttccattttgacgatctcaccctt 345
             ||||||||||||||||  ||||| ||  | ||||| || |||||||| |||||||| |||
Sbjct: 79017 ttgaatgccaaggagcagttgtattctgacaacatctttcattttgatgatctcactctt 78958

                              
Query: 346   agcacactacagatagt 362
             ||||| || ||||||||
Sbjct: 78957 agcaccctgcagatagt 78941



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 45    aaaccctaaccctagatcgtgaggg 69
             ||||||||||||||||||| |||||
Sbjct: 80627 aaaccctaaccctagatcgcgaggg 80603
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  206 bits (104), Expect = 4e-50
 Identities = 137/148 (92%)
 Strand = Plus / Minus

                                                                            
Query: 79       atggccagcaagttcgggctcgccggcggaatcccggagcggcgggtgcggccgatctgg 138
                ||||| |||||||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 16129398 atggcaagcaagttcgggctcgccgggggcatcccggagaggcgggtgcggccgatctgg 16129339

                                                                            
Query: 139      gacgccgtcgactcgcgacagtacaaggccgcgctcaagctctgcacctcgctcctcgcc 198
                ||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 16129338 gacgccgtcgactcgcgccagtacaaggctgcgctcaagctctgcaccgcgctcctcgcc 16129279

                                            
Query: 199      aagcaccccacctcaccctacgccctcg 226
                |||||||| ||||| || |||| |||||
Sbjct: 16129278 aagcacccgacctccccttacgtcctcg 16129251



 Score =  137 bits (69), Expect = 3e-29
 Identities = 120/137 (87%)
 Strand = Plus / Minus

                                                                            
Query: 226      gctctcaaggctcttactttggaaaggatgggaaagcctgatgaagcactgactgtctgt 285
                |||||||||| ||||| ||||||||||||||||||||||||||||||||| | ||| |||
Sbjct: 16127907 gctctcaagggtcttattttggaaaggatgggaaagcctgatgaagcactcagtgtgtgt 16127848

                                                                            
Query: 286      ttgaatgccaaggagctattgtactcgaataacattttccattttgacgatctcaccctt 345
                ||||||||||||||||  ||||| ||  | ||||| || |||||||| |||||||| |||
Sbjct: 16127847 ttgaatgccaaggagcagttgtattctgacaacatctttcattttgatgatctcactctt 16127788

                                 
Query: 346      agcacactacagatagt 362
                ||||| || ||||||||
Sbjct: 16127787 agcaccctgcagatagt 16127771



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 43       caaaaccctaaccctagatcg 63
                |||||||||||||||||||||
Sbjct: 19245924 caaaaccctaaccctagatcg 19245904



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 45       aaaccctaaccctagatcgtgaggg 69
                ||||||||||||||||||| |||||
Sbjct: 16129457 aaaccctaaccctagatcgcgaggg 16129433



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 43      caaaaccctaaccctagatcg 63
               |||||||||||||||||||||
Sbjct: 7877301 caaaaccctaaccctagatcg 7877321
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 43       caaaaccctaaccctagatcgtg 65
                |||||||||||||||||||||||
Sbjct: 15354749 caaaaccctaaccctagatcgtg 15354771



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 35       ccgccgctcaaaaccctaacccta 58
                ||||||| ||||||||||||||||
Sbjct: 18923218 ccgccgcccaaaaccctaacccta 18923195
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 43       caaaaccctaaccctagatcgtg 65
                |||||||||||||||||||||||
Sbjct: 15309032 caaaaccctaaccctagatcgtg 15309054



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 35       ccgccgctcaaaaccctaacccta 58
                ||||||| ||||||||||||||||
Sbjct: 18849445 ccgccgcccaaaaccctaacccta 18849422
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>emb|AL713928.3|CNS07YP5 Oryza sativa chromosome 12, . BAC OSJNBa0036B12 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 151541

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 43     caaaaccctaaccctagatcgtg 65
              |||||||||||||||||||||||
Sbjct: 130142 caaaaccctaaccctagatcgtg 130164
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>emb|AL513189.13| Human DNA sequence from clone RP11-339I11 on chromosome 1 Contains part
             of a novel gene, complete sequence
          Length = 59522

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 249   aaggatgggaaagcctgatgaa 270
             ||||||||||||||||||||||
Sbjct: 37768 aaggatgggaaagcctgatgaa 37747
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>ref|XM_465482.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1050

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 43   caaaaccctaaccctagatcg 63
            |||||||||||||||||||||
Sbjct: 1015 caaaaccctaaccctagatcg 1035
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>ref|NM_196010.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBb0076H04.16), mRNA
          Length = 582

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   cttcttcctcctcccgctctc 21
           |||||||||||||||||||||
Sbjct: 563 cttcttcctcctcccgctctc 543
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>gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01,
             complete sequence
          Length = 146303

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 43    caaaaccctaaccctagatcg 63
             |||||||||||||||||||||
Sbjct: 49999 caaaaccctaaccctagatcg 49979
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>gb|AC145396.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0042F15, complete sequence
          Length = 162959

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 43    caaaaccctaaccctagatcg 63
             |||||||||||||||||||||
Sbjct: 62076 caaaaccctaaccctagatcg 62096
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>gb|AC167227.1| Oryza sativa (japonica cultivar-group) chromosome unknown clone
             OSJNBb0026K11, complete sequence
          Length = 129643

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 43    caaaaccctaaccctagatcg 63
             |||||||||||||||||||||
Sbjct: 26104 caaaaccctaaccctagatcg 26084
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>emb|AL358793.14| Human DNA sequence from clone RP11-19M4 on chromosome 1, complete
            sequence
          Length = 92434

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 230  tcaaggctcttactttggaaa 250
            |||||||||||||||||||||
Sbjct: 8258 tcaaggctcttactttggaaa 8278
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>emb|BX883046.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
             assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
             RT1n haplotype; segment 5/11
          Length = 349047

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 196   gccaagcaccccacctcaccc 216
             |||||||||||||||||||||
Sbjct: 94280 gccaagcaccccacctcaccc 94300
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>emb|AJ314857.1|RNO314857 Rattus norvegicus Nfkbil1 gene (partial), Atp6G, Bat1, RT1-C/E1,
             RT1-C/E2, RT1-C/E3, RT1-C/E4, RT1-C/E5, RT1-C/E7 genes and
             RT1-C/E6, RT1-C/E8, RT1-C/E9 pseudogenes
          Length = 198911

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 196   gccaagcaccccacctcaccc 216
             |||||||||||||||||||||
Sbjct: 12096 gccaagcaccccacctcaccc 12116
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>gb|AC093093.5| Oryza sativa chromosome 10 BAC OSJNBb0076H04 genomic sequence, complete
             sequence
          Length = 141050

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1     cttcttcctcctcccgctctc 21
             |||||||||||||||||||||
Sbjct: 70065 cttcttcctcctcccgctctc 70085
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>gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, complete sequence
          Length = 144459

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1      cttcttcctcctcccgctctc 21
              |||||||||||||||||||||
Sbjct: 129364 cttcttcctcctcccgctctc 129344
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>gb|AC090056.2|AC090056 Oryza sativa chromosome 9 clone PAC0663H05, complete sequence
          Length = 161873

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1     cttcttcctcctcccgctctc 21
             |||||||||||||||||||||
Sbjct: 41570 cttcttcctcctcccgctctc 41550
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>gb|AC079038.3|AC079038 Oryza sativa chromosome 7 clone OSJNBb0024A20, complete sequence
          Length = 129838

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 43    caaaaccctaaccctagatcg 63
             |||||||||||||||||||||
Sbjct: 35381 caaaaccctaaccctagatcg 35401
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 1        cttcttcctcctcccgctctc 21
                |||||||||||||||||||||
Sbjct: 27402643 cttcttcctcctcccgctctc 27402623
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 1        cttcttcctcctcccgctctc 21
                |||||||||||||||||||||
Sbjct: 10488896 cttcttcctcctcccgctctc 10488876



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 43       caaaaccctaaccctagatc 62
                ||||||||||||||||||||
Sbjct: 14584034 caaaaccctaaccctagatc 14584053



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 43      caaaaccctaaccctagatc 62
               ||||||||||||||||||||
Sbjct: 4094726 caaaaccctaaccctagatc 4094707
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 43       caaaaccctaaccctagatcg 63
                |||||||||||||||||||||
Sbjct: 16064230 caaaaccctaaccctagatcg 16064210



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 1       cttcttcctcctcccgctctc 21
               |||||||||||||||||||||
Sbjct: 6472230 cttcttcctcctcccgctctc 6472250



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 1       cttcttcctcctcccgctctc 21
               |||||||||||||||||||||
Sbjct: 6388090 cttcttcctcctcccgctctc 6388110



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 43      caaaaccctaaccctagatc 62
               ||||||||||||||||||||
Sbjct: 2502327 caaaaccctaaccctagatc 2502346
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 43       caaaaccctaaccctagatcg 63
                |||||||||||||||||||||
Sbjct: 25053772 caaaaccctaaccctagatcg 25053752
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 43       caaaaccctaaccctagatcg 63
                |||||||||||||||||||||
Sbjct: 15499570 caaaaccctaaccctagatcg 15499550



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 43       caaaaccctaaccctagatc 62
                ||||||||||||||||||||
Sbjct: 10654513 caaaaccctaaccctagatc 10654494
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>dbj|AP005705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0453B09
          Length = 173688

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1      cttcttcctcctcccgctctc 21
              |||||||||||||||||||||
Sbjct: 138307 cttcttcctcctcccgctctc 138327



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1     cttcttcctcctcccgctctc 21
             |||||||||||||||||||||
Sbjct: 54167 cttcttcctcctcccgctctc 54187
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>dbj|AP006758.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0663H05
          Length = 161938

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1      cttcttcctcctcccgctctc 21
              |||||||||||||||||||||
Sbjct: 120369 cttcttcctcctcccgctctc 120389
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>dbj|AP005833.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1328_D07
          Length = 155007

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 43    caaaaccctaaccctagatcg 63
             |||||||||||||||||||||
Sbjct: 64443 caaaaccctaaccctagatcg 64423
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>dbj|AP005895.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0018L13
          Length = 131155

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 43    caaaaccctaaccctagatcg 63
             |||||||||||||||||||||
Sbjct: 94452 caaaaccctaaccctagatcg 94432
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>dbj|AP005068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0644G05
          Length = 143119

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 43    caaaaccctaaccctagatcg 63
             |||||||||||||||||||||
Sbjct: 27130 caaaaccctaaccctagatcg 27110
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 1        cttcttcctcctcccgctctc 21
                |||||||||||||||||||||
Sbjct: 10494935 cttcttcctcctcccgctctc 10494915



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 43       caaaaccctaaccctagatc 62
                ||||||||||||||||||||
Sbjct: 14592275 caaaaccctaaccctagatc 14592294



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 43      caaaaccctaaccctagatc 62
               ||||||||||||||||||||
Sbjct: 4095547 caaaaccctaaccctagatc 4095528
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>ref|NM_125064.1| Arabidopsis thaliana unknown protein AT5G56810 mRNA, complete cds
          Length = 1308

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 41  ctcaaaaccctaaccctaga 60
           ||||||||||||||||||||
Sbjct: 262 ctcaaaaccctaaccctaga 281
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>gb|AF443599.1| Zea mays enhancer of polycomb-like protein (epc101) mRNA, complete
           cds
          Length = 1897

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 40  gctcaaaaccctaaccctag 59
           ||||||||||||||||||||
Sbjct: 103 gctcaaaaccctaaccctag 122
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>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome
          Length = 1709204

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 313     aataacattttccattttga 332
               ||||||||||||||||||||
Sbjct: 1233245 aataacattttccattttga 1233264
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>ref|XM_480765.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 303

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 2   ttcttcctcctcccgctctc 21
           ||||||||||||||||||||
Sbjct: 82  ttcttcctcctcccgctctc 101
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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 109    atcccggagcggcgggtgcggccg 132
              |||||||| |||||||||||||||
Sbjct: 207474 atcccggatcggcgggtgcggccg 207497
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>gb|AC162459.2| Mus musculus chromosome 3, clone RP23-80A8, complete sequence
          Length = 207515

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    actgactgtctgtttgaatg 292
              ||||||||||||||||||||
Sbjct: 175682 actgactgtctgtttgaatg 175701
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    ggagcggcgggtgcggccga 133
              ||||||||||||||||||||
Sbjct: 233499 ggagcggcgggtgcggccga 233480
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>gb|AC073392.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0072A12,
             complete sequence
          Length = 149347

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    caaaaccctaaccctagatc 62
             ||||||||||||||||||||
Sbjct: 56496 caaaaccctaaccctagatc 56515
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>gb|AC078944.5|AC078944 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0089D15, from Chromosome 10, complete sequence
          Length = 164679

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    caaaaccctaaccctagatc 62
             ||||||||||||||||||||
Sbjct: 91555 caaaaccctaaccctagatc 91536
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 43       caaaaccctaaccctagatc 62
                ||||||||||||||||||||
Sbjct: 19902409 caaaaccctaaccctagatc 19902428



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 2       ttcttcctcctcccgctctc 21
               ||||||||||||||||||||
Sbjct: 7583808 ttcttcctcctcccgctctc 7583789



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 42      tcaaaaccctaaccctagat 61
               ||||||||||||||||||||
Sbjct: 7505120 tcaaaaccctaaccctagat 7505139
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 43      caaaaccctaaccctagatc 62
               ||||||||||||||||||||
Sbjct: 8363995 caaaaccctaaccctagatc 8363976
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>dbj|AP004667.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0433E10
          Length = 144643

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    caaaaccctaaccctagatc 62
             ||||||||||||||||||||
Sbjct: 70587 caaaaccctaaccctagatc 70606
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>dbj|AP005583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0406E03
          Length = 201069

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    caaaaccctaaccctagatc 62
             ||||||||||||||||||||
Sbjct: 88917 caaaaccctaaccctagatc 88936
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>dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0603C10
          Length = 187620

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     caaaaccctaaccctagatc 62
              ||||||||||||||||||||
Sbjct: 157500 caaaaccctaaccctagatc 157481
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>dbj|AP003799.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1006_H01
          Length = 113769

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      ttcttcctcctcccgctctc 21
              ||||||||||||||||||||
Sbjct: 110889 ttcttcctcctcccgctctc 110870



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    tcaaaaccctaaccctagat 61
             ||||||||||||||||||||
Sbjct: 32201 tcaaaaccctaaccctagat 32220
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>dbj|AB117723.1| Rhodococcus rhodochrous orf51, bphC5, orf52, orf53, orf54, orf55,
            orf56 genes for hypothetical proteins and 2,
            3-dihydroxybiphenyl 1, 2-dioxygenase, partial and
            complete cds
          Length = 5810

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 96   gctcgccggcggaatcccgg 115
            ||||||||||||||||||||
Sbjct: 3044 gctcgccggcggaatcccgg 3063
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>dbj|AP005533.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0018M09
          Length = 157377

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    caaaaccctaaccctagatc 62
             ||||||||||||||||||||
Sbjct: 72203 caaaaccctaaccctagatc 72184
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>dbj|AB013392.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19
          Length = 84129

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    ctcaaaaccctaaccctaga 60
             ||||||||||||||||||||
Sbjct: 72986 ctcaaaaccctaaccctaga 73005
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>dbj|AP004751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0494D11
          Length = 149198

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 2    ttcttcctcctcccgctctc 21
            ||||||||||||||||||||
Sbjct: 9003 ttcttcctcctcccgctctc 8984
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>dbj|AK071243.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087F24,
          full insert sequence
          Length = 1121

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 35 ccgccgctcaaaaccctaacccta 58
          ||||||| ||||||||||||||||
Sbjct: 27 ccgccgcccaaaaccctaacccta 50
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>dbj|AK068908.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003C02,
          full insert sequence
          Length = 1373

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 35 ccgccgctcaaaaccctaacccta 58
          ||||||| ||||||||||||||||
Sbjct: 57 ccgccgcccaaaaccctaacccta 80
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>gb|AC102012.7| Mus musculus chromosome 3, clone RP24-542B2, complete sequence
          Length = 155366

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   actgactgtctgtttgaatg 292
             ||||||||||||||||||||
Sbjct: 76672 actgactgtctgtttgaatg 76691
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 159     gtacaaggccgcgctcaagc 178
               ||||||||||||||||||||
Sbjct: 2940294 gtacaaggccgcgctcaagc 2940275
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>emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 153064

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 35    ccgccgctcaaaaccctaacccta 58
             ||||||| ||||||||||||||||
Sbjct: 47161 ccgccgcccaaaaccctaacccta 47184
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>emb|BX255875.3|CNS09S4W Oryza sativa chromosome 12, . BAC OSJNBa0018L16 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 151203

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 35    ccgccgctcaaaaccctaacccta 58
             ||||||| ||||||||||||||||
Sbjct: 19335 ccgccgcccaaaaccctaacccta 19312
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>emb|AL157756.3|CNS01RG4 Human chromosome 14 DNA sequence BAC C-2184C24 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 127544

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   gggaaagcctgatgaagcac 274
             ||||||||||||||||||||
Sbjct: 10823 gggaaagcctgatgaagcac 10842


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,982,607
Number of Sequences: 3902068
Number of extensions: 2982607
Number of successful extensions: 79876
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78550
Number of HSP's gapped (non-prelim): 1326
length of query: 362
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 340
effective length of database: 17,147,199,772
effective search space: 5830047922480
effective search space used: 5830047922480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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