ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl16e06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466019.1| Oryza sativa (japonica cultivar-group), mRNA 226 4e-56
2gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA bindin... 226 4e-56
3dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 4e-56
4gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA bindin... 145 1e-31
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 145 1e-31
6dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic D... 145 1e-31
7dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic D... 145 1e-31
8gb|AY350714.1| Olimarabidopsis pumila clone BAC Op37I22, complet... 62 1e-06
9gb|BT013149.1| Lycopersicon esculentum clone 134149F, mRNA sequence 58 2e-05
10gb|AC139708.15| Medicago truncatula clone mth2-9f16, complete se... 58 2e-05
11ref|NM_120817.2| Arabidopsis thaliana nuclease/ nucleic acid bin... 54 3e-04
12gb|AY064975.1| Arabidopsis thaliana AT5g07350/T2I1_60 mRNA, comp... 54 3e-04
13emb|AL163912.1|ATT2I1 Arabidopsis thaliana DNA chromosome 5, BAC... 54 3e-04
14dbj|AB078603.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor... 52 0.001
15dbj|AB078602.1| Pisum sativum mRNA for 110kDa protein HMP, parti... 52 0.001
16gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic m... 44 0.30
17emb|AJ632310.1| Cotesia congregata virus complete genome, segmen... 42 1.2
18gb|AC012572.17| Homo sapiens chromosome 18, clone RP11-123I22, c... 42 1.2
19gb|AY651828.1| Cotesia plutellae polydnavirus segment CpBV-S30, ... 42 1.2
20gb|AC097832.7| Rattus norvegicus 11 BAC CH230-68C19 (Children's ... 40 4.7
21gb|AC125265.8| Mus musculus chromosome 6, clone RP24-444K24, com... 40 4.7
22gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide... 40 4.7
23gb|AC159505.7| Mus musculus 6 BAC RP23-81D20 (Roswell Park Cance... 40 4.7
24gb|AC153902.4| Mus musculus 6 BAC RP23-5K15 (Roswell Park Cancer... 40 4.7
25dbj|AP001972.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 4.7
26gb|DQ314865.1| Homo sapiens arrestin, beta 1 (ARRB1) gene, compl... 40 4.7 
>ref|XM_466019.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3549

 Score =  226 bits (114), Expect = 4e-56
 Identities = 179/200 (89%), Gaps = 3/200 (1%)
 Strand = Plus / Plus

                                                                       
Query: 155 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 214
           ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 237 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 296

                                                                       
Query: 215 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 271
           |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 297 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 356

                                                                       
Query: 272 cttatggccccaaggctggctcgtcgtggtggagtcgatgagccatttgcttgggaaagc 331
           || |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct: 357 ctcatggccccaaggctggctcgccgtggtggagtggatgaaccatttgcttgggaaagc 416

                               
Query: 332 aaggagtttctgaggaaact 351
           | ||||||||| ||||||||
Sbjct: 417 agggagtttctaaggaaact 436
to top
>gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120
           mRNA, complete cds
          Length = 2961

 Score =  226 bits (114), Expect = 4e-56
 Identities = 179/200 (89%), Gaps = 3/200 (1%)
 Strand = Plus / Plus

                                                                       
Query: 155 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 214
           ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 16  ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 75

                                                                       
Query: 215 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 271
           |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 76  atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 135

                                                                       
Query: 272 cttatggccccaaggctggctcgtcgtggtggagtcgatgagccatttgcttgggaaagc 331
           || |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct: 136 ctcatggccccaaggctggctcgccgtggtggagtggatgaaccatttgcttgggaaagc 195

                               
Query: 332 aaggagtttctgaggaaact 351
           | ||||||||| ||||||||
Sbjct: 196 agggagtttctaaggaaact 215
to top
>dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J15, full
           insert sequence
          Length = 3547

 Score =  226 bits (114), Expect = 4e-56
 Identities = 179/200 (89%), Gaps = 3/200 (1%)
 Strand = Plus / Plus

                                                                       
Query: 155 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 214
           ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 237 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 296

                                                                       
Query: 215 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 271
           |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 297 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 356

                                                                       
Query: 272 cttatggccccaaggctggctcgtcgtggtggagtcgatgagccatttgcttgggaaagc 331
           || |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct: 357 ctcatggccccaaggctggctcgccgtggtggagtggatgaaccatttgcttgggaaagc 416

                               
Query: 332 aaggagtttctgaggaaact 351
           | ||||||||| ||||||||
Sbjct: 417 agggagtttctaaggaaact 436
to top
>gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120
           gene, complete cds
          Length = 5478

 Score =  145 bits (73), Expect = 1e-31
 Identities = 123/139 (88%), Gaps = 3/139 (2%)
 Strand = Plus / Plus

                                                                       
Query: 155 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 214
           ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 45  ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 104

                                                                       
Query: 215 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 271
           |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 105 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 164

                              
Query: 272 cttatggccccaaggctgg 290
           || ||||||||||||||||
Sbjct: 165 ctcatggccccaaggctgg 183



 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 58/63 (92%)
 Strand = Plus / Plus

                                                                       
Query: 289 ggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcaaggagtttctgaggaa 348
           |||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||| |||||
Sbjct: 541 ggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaa 600

              
Query: 349 act 351
           |||
Sbjct: 601 act 603
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  145 bits (73), Expect = 1e-31
 Identities = 123/139 (88%), Gaps = 3/139 (2%)
 Strand = Plus / Minus

                                                                            
Query: 155      ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 214
                ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 19123886 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 19123827

                                                                            
Query: 215      atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 271
                |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 19123826 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 19123767

                                   
Query: 272      cttatggccccaaggctgg 290
                || ||||||||||||||||
Sbjct: 19123766 ctcatggccccaaggctgg 19123748



 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 58/63 (92%)
 Strand = Plus / Minus

                                                                            
Query: 289      ggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcaaggagtttctgaggaa 348
                |||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||| |||||
Sbjct: 19123390 ggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaa 19123331

                   
Query: 349      act 351
                |||
Sbjct: 19123330 act 19123328
to top
>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0415B12
          Length = 157419

 Score =  145 bits (73), Expect = 1e-31
 Identities = 123/139 (88%), Gaps = 3/139 (2%)
 Strand = Plus / Minus

                                                                         
Query: 155   ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 214
             ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 22135 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 22076

                                                                         
Query: 215   atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 271
             |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 22075 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 22016

                                
Query: 272   cttatggccccaaggctgg 290
             || ||||||||||||||||
Sbjct: 22015 ctcatggccccaaggctgg 21997



 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 58/63 (92%)
 Strand = Plus / Minus

                                                                         
Query: 289   ggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcaaggagtttctgaggaa 348
             |||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||| |||||
Sbjct: 21639 ggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaa 21580

                
Query: 349   act 351
             |||
Sbjct: 21579 act 21577
to top
>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0047A17
          Length = 149142

 Score =  145 bits (73), Expect = 1e-31
 Identities = 123/139 (88%), Gaps = 3/139 (2%)
 Strand = Plus / Minus

                                                                          
Query: 155    ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 214
              ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 129407 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 129348

                                                                          
Query: 215    atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 271
              |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 129347 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 129288

                                 
Query: 272    cttatggccccaaggctgg 290
              || ||||||||||||||||
Sbjct: 129287 ctcatggccccaaggctgg 129269



 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 58/63 (92%)
 Strand = Plus / Minus

                                                                          
Query: 289    ggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcaaggagtttctgaggaa 348
              |||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||| |||||
Sbjct: 128911 ggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaa 128852

                 
Query: 349    act 351
              |||
Sbjct: 128851 act 128849
to top
>gb|AY350714.1| Olimarabidopsis pumila clone BAC Op37I22, complete sequence
          Length = 84869

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                           
Query: 308  gatgagccatttgcttgggaaagcaaggagtttctgaggaaactttg 354
            |||||||| ||||| |||||||||||||| ||| |||||||||||||
Sbjct: 8643 gatgagccttttgcatgggaaagcaaggaatttttgaggaaactttg 8597
to top
>gb|BT013149.1| Lycopersicon esculentum clone 134149F, mRNA sequence
          Length = 3381

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                        
Query: 288 tggctcgtcgtggtggagtcgatgagccatttgcttgggaaagca 332
           |||| |||||||||||||| |||||||||||||| ||| ||||||
Sbjct: 319 tggcacgtcgtggtggagtggatgagccatttgcatggcaaagca 363
to top
>gb|AC139708.15| Medicago truncatula clone mth2-9f16, complete sequence
          Length = 117358

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                          
Query: 289    ggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcaaggagtttctgaggaa 348
              ||||||| | ||||| |||||||| |||||||| |||||||| |  ||||||||||||||
Sbjct: 103351 ggctcgtagaggtggtgtcgatgaaccatttgcatgggaaagtagagagtttctgaggaa 103292

                   
Query: 349    acttt 353
               ||||
Sbjct: 103291 gcttt 103287
to top
>ref|NM_120817.2| Arabidopsis thaliana nuclease/ nucleic acid binding AT5G07350 mRNA,
           complete cds
          Length = 3397

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 308 gatgagccatttgcttgggaaagcaaggagtttctgaggaaactttg 354
           |||||||| ||||| ||||||||||| || ||| |||||||||||||
Sbjct: 330 gatgagccttttgcatgggaaagcaaagaatttttgaggaaactttg 376
to top
>gb|AY064975.1| Arabidopsis thaliana AT5g07350/T2I1_60 mRNA, complete cds
          Length = 3397

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 308 gatgagccatttgcttgggaaagcaaggagtttctgaggaaactttg 354
           |||||||| ||||| ||||||||||| || ||| |||||||||||||
Sbjct: 330 gatgagccttttgcatgggaaagcaaagaatttttgaggaaactttg 376
to top
>emb|AL163912.1|ATT2I1 Arabidopsis thaliana DNA chromosome 5, BAC clone T2I1 (ESSA project)
          Length = 116763

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                            
Query: 308   gatgagccatttgcttgggaaagcaaggagtttctgaggaaactttg 354
             |||||||| ||||| ||||||||||| || ||| |||||||||||||
Sbjct: 39695 gatgagccttttgcatgggaaagcaaagaatttttgaggaaactttg 39649
to top
>dbj|AB078603.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor domain protein,
           complete cds
          Length = 3379

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 179 aaggtgaaggctgtgacttctggggactgc 208
           |||||||||||||| |||||||||||||||
Sbjct: 237 aaggtgaaggctgttacttctggggactgc 266



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 299 ggtggagtcgatgagccatttgcttgggaaagcaaggagtttctgaggaaactttg 354
           ||||| || |||||| ||||||| |||||||| |  |||||||||||||| |||||
Sbjct: 366 ggtggtgttgatgaggcatttgcatgggaaagtagagagtttctgaggaagctttg 421
to top
>dbj|AB078602.1| Pisum sativum mRNA for 110kDa protein HMP, partial cds
          Length = 1339

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 179 aaggtgaaggctgtgacttctggggactgc 208
           |||||||||||||| |||||||||||||||
Sbjct: 237 aaggtgaaggctgttacttctggggactgc 266



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 299 ggtggagtcgatgagccatttgcttgggaaagcaaggagtttctgaggaaactttg 354
           ||||| || |||||| ||||||| |||||||| |  |||||||||||||| |||||
Sbjct: 366 ggtggtgttgatgaggcatttgcatgggaaagtagagagtttctgaggaagctttg 421
to top
>gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic monensin biosynthesis
             gene cluster, partial sequence
          Length = 103450

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 98    aggcggaggccgctcgccgccg 119
             ||||||||||||||||||||||
Sbjct: 60057 aggcggaggccgctcgccgccg 60036
to top
>emb|AJ632310.1| Cotesia congregata virus complete genome, segment Circle7
          Length = 24748

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 287   ctggctcgtcgtggtggagtc 307
             |||||||||||||||||||||
Sbjct: 16499 ctggctcgtcgtggtggagtc 16519
to top
>gb|AC012572.17| Homo sapiens chromosome 18, clone RP11-123I22, complete sequence
          Length = 172637

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 330   gcaaggagtttctgaggaaac 350
             |||||||||||||||||||||
Sbjct: 61469 gcaaggagtttctgaggaaac 61449
to top
>gb|AY651828.1| Cotesia plutellae polydnavirus segment CpBV-S30, complete sequence
          Length = 23535

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 287   ctggctcgtcgtggtggagtc 307
             |||||||||||||||||||||
Sbjct: 14723 ctggctcgtcgtggtggagtc 14703
to top
>gb|AC097832.7| Rattus norvegicus 11 BAC CH230-68C19 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 262323

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 335   gagtttctgaggaaactttg 354
             ||||||||||||||||||||
Sbjct: 97730 gagtttctgaggaaactttg 97749
to top
>gb|AC125265.8| Mus musculus chromosome 6, clone RP24-444K24, complete sequence
          Length = 156056

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 245    ccagagaagtccatcactct 264
              ||||||||||||||||||||
Sbjct: 148918 ccagagaagtccatcactct 148937
to top
>gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide antibiotic A54145
             biosynthetic gene cluster, complete sequence
          Length = 126933

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    ggcggaggccgctcgccgcc 118
             ||||||||||||||||||||
Sbjct: 32744 ggcggaggccgctcgccgcc 32763
to top
>gb|AC159505.7| Mus musculus 6 BAC RP23-81D20 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 254457

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   ccagagaagtccatcactct 264
             ||||||||||||||||||||
Sbjct: 18393 ccagagaagtccatcactct 18374
to top
>gb|AC153902.4| Mus musculus 6 BAC RP23-5K15 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 208717

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   ccagagaagtccatcactct 264
             ||||||||||||||||||||
Sbjct: 66033 ccagagaagtccatcactct 66052
to top
>dbj|AP001972.4| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2562J17, complete
              sequences
          Length = 215225

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 321    cttgggaaagcaaggagttt 340
              ||||||||||||||||||||
Sbjct: 168179 cttgggaaagcaaggagttt 168160
to top
>gb|DQ314865.1| Homo sapiens arrestin, beta 1 (ARRB1) gene, complete cds
          Length = 89549

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 321   cttgggaaagcaaggagttt 340
             ||||||||||||||||||||
Sbjct: 88579 cttgggaaagcaaggagttt 88598


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,936,920
Number of Sequences: 3902068
Number of extensions: 2936920
Number of successful extensions: 54975
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54901
Number of HSP's gapped (non-prelim): 70
length of query: 354
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 332
effective length of database: 17,147,199,772
effective search space: 5692870324304
effective search space used: 5692870324304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top