ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl16d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CEFE_NOCLA (Q03047) Deacetoxycephalosporin C synthetase (EC 1.14... 29 3.3
2DEAF1_MOUSE (Q9Z1T5) Deformed epidermal autoregulatory factor 1 ... 28 4.3
3DEAF1_RAT (O88450) Deformed epidermal autoregulatory factor 1 ho... 28 4.3
4DEAF1_PANTR (O77562) Deformed epidermal autoregulatory factor 1 ... 28 5.7
5DEAF1_HUMAN (O75398) Deformed epidermal autoregulatory factor 1 ... 28 5.7
6OR1M1_HUMAN (Q8NGA1) Olfactory receptor 1M1 (Olfactory receptor ... 28 7.4
7VIT_ONCMY (Q92093) Vitellogenin precursor (VTG) [Contains: Lipov... 27 9.7
8PG20_MYCTU (O53416) Hypothetical PE-PGRS family protein PE_PGRS20 27 9.7

>CEFE_NOCLA (Q03047) Deacetoxycephalosporin C synthetase (EC 1.14.20.1) (DAOCS)|
           (Expandase)
          Length = 314

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 229 QIQEDGK*VEYSSMISVGTSDALEPFCQLRTTW 327
           QI   GK  +YS   S+GT+D L P  +    W
Sbjct: 89  QITNTGKYTDYSMSYSMGTADNLFPSAEFEKAW 121



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>DEAF1_MOUSE (Q9Z1T5) Deformed epidermal autoregulatory factor 1 homolog|
           (Nuclear DEAF-1-related transcriptional regulator)
           (NUDR)
          Length = 566

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -1

Query: 165 KTSLGSRGRRRCLNLDGAWXXXXXRDGTAEAASPLGWTR 49
           K+ LGS GR RC+     W      +  A  AS   W R
Sbjct: 217 KSRLGSGGRGRCIKQGENWYSPTEFEAMAGRASSKDWKR 255



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>DEAF1_RAT (O88450) Deformed epidermal autoregulatory factor 1 homolog|
           (Nuclear DEAF-1-related transcriptional regulator)
           (NUDR) (Suppressin)
          Length = 565

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -1

Query: 165 KTSLGSRGRRRCLNLDGAWXXXXXRDGTAEAASPLGWTR 49
           K+ LGS GR RC+     W      +  A  AS   W R
Sbjct: 216 KSRLGSGGRGRCIKQGENWYSPTEFEAMAGRASSKDWKR 254



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>DEAF1_PANTR (O77562) Deformed epidermal autoregulatory factor 1 homolog|
           (Nuclear DEAF-1-related transcriptional regulator)
           (NUDR)
          Length = 565

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -1

Query: 165 KTSLGSRGRRRCLNLDGAWXXXXXRDGTAEAASPLGWTR 49
           K  LGS GR RC+     W      +  A  AS   W R
Sbjct: 216 KNRLGSGGRGRCIKQGENWYSPTEFEAMAGRASSKDWKR 254



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>DEAF1_HUMAN (O75398) Deformed epidermal autoregulatory factor 1 homolog|
           (Nuclear DEAF-1-related transcriptional regulator)
           (NUDR) (Suppressin) (Zinc finger MYND domain-containing
           protein 5)
          Length = 565

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -1

Query: 165 KTSLGSRGRRRCLNLDGAWXXXXXRDGTAEAASPLGWTR 49
           K  LGS GR RC+     W      +  A  AS   W R
Sbjct: 216 KNRLGSGGRGRCIKQGENWYSPTEFEAMAGRASSKDWKR 254



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>OR1M1_HUMAN (Q8NGA1) Olfactory receptor 1M1 (Olfactory receptor 19-6) (OR19-6)|
          Length = 313

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -2

Query: 335 TVPQVVLS*QNGSRASDVPTEIIELYSTYF 246
           T+P++++S Q GS+A   P  +I++Y  +F
Sbjct: 77  TIPKMLVSLQTGSKAISYPCCLIQMYFFHF 106



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>VIT_ONCMY (Q92093) Vitellogenin precursor (VTG) [Contains: Lipovitellin I|
           (LVI); Phosvitin (PV); Lipovitellin II (LVII)]
          Length = 1659

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 14/72 (19%)
 Frame = +2

Query: 134 RRRPREPSDVFLALFVNPAAHPAQAVLP-VTVFRSK-------------KMENKLNIVQ* 271
           +R PR   +V + LF++ A HP   +L  + +F +K             K E  + +   
Sbjct: 527 KREPRMVQEVAVQLFMDKALHPELRMLACIVLFETKPPMGLVITLASILKTEKNMQVAS- 585

Query: 272 FLLGHQMLLSRS 307
           F   H M L+RS
Sbjct: 586 FTYSHMMSLTRS 597



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>PG20_MYCTU (O53416) Hypothetical PE-PGRS family protein PE_PGRS20|
          Length = 463

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/57 (28%), Positives = 20/57 (35%)
 Frame = -1

Query: 228 KTVTGRTAWAGCAAGLTKRARKTSLGSRGRRRCLNLDGAWXXXXXRDGTAEAASPLG 58
           +T  G T   G +AGL         G  G       +G W      +G A  A P G
Sbjct: 145 QTTAGLTGGTGGSAGLIGNGGNGGAGGAGANGGAGGNGGWLYGSGGNGGAGGAGPAG 201


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,669,502
Number of Sequences: 219361
Number of extensions: 533352
Number of successful extensions: 1194
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 80,573,946
effective HSP length: 88
effective length of database: 61,270,178
effective search space used: 1470484272
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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