>gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0091I11,
              complete sequence
          Length = 135993

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 67     cgacgccgcctccgccgtcccg 88
              ||||||||||||||||||||||
Sbjct: 124422 cgacgccgcctccgccgtcccg 124443

>gb|AC138000.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0024M06, complete sequence
          Length = 51144

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 67    cgacgccgcctccgccgtcccg 88
             ||||||||||||||||||||||
Sbjct: 50931 cgacgccgcctccgccgtcccg 50910

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 67      cgacgccgcctccgccgtcccg 88
               ||||||||||||||||||||||
Sbjct: 7665336 cgacgccgcctccgccgtcccg 7665357

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 67      cgacgccgcctccgccgtcccg 88
               ||||||||||||||||||||||
Sbjct: 7735423 cgacgccgcctccgccgtcccg 7735444

>ref|XM_479755.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1398

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 95  cctcctccccgtcgccacgcc 115
           |||||||||||||||||||||
Sbjct: 504 cctcctccccgtcgccacgcc 484

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 95     cctcctccccgtcgccacgcc 115
              |||||||||||||||||||||
Sbjct: 691335 cctcctccccgtcgccacgcc 691315

>gb|AC154220.1| Mus musculus BAC clone RP24-364C6 from chromosome 13, complete sequence
          Length = 175727

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 313   ctcaggacaacttggggtaca 333
             |||||||||||||||||||||
Sbjct: 19008 ctcaggacaacttggggtaca 18988

>dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0498H04
          Length = 151046

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 95     cctcctccccgtcgccacgcc 115
              |||||||||||||||||||||
Sbjct: 118713 cctcctccccgtcgccacgcc 118693

>dbj|AK069503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019J18, full
           insert sequence
          Length = 1398

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 95  cctcctccccgtcgccacgcc 115
           |||||||||||||||||||||
Sbjct: 504 cctcctccccgtcgccacgcc 484

>tpe|BN000646.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx117 gene
           for class III peroxidase 117 precursor, exon 1
          Length = 948

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 95  cctcctccccgtcgccacgcc 115
           |||||||||||||||||||||
Sbjct: 441 cctcctccccgtcgccacgcc 421

>gb|AC122860.5| Mus musculus BAC clone RP23-135A22 from 12, complete sequence
          Length = 233864

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 278    ttgggacatcagatgctcttg 298
              |||||||||||||||||||||
Sbjct: 155429 ttgggacatcagatgctcttg 155449

>ref|NM_117416.2| Arabidopsis thaliana HAK5; potassium ion transporter AT4G13420 (HAK5)
            mRNA, complete cds
          Length = 2623

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 144  cccgtgaaccgagtgacgtc 163
            ||||||||||||||||||||
Sbjct: 1866 cccgtgaaccgagtgacgtc 1885

>ref|NM_005599.2| Homo sapiens nescient helix loop helix 2 (NHLH2), mRNA
          Length = 2518

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 184 ccccgcggcgcaccccgccc 203
           ||||||||||||||||||||
Sbjct: 942 ccccgcggcgcaccccgccc 923

>gb|BT010589.1| Arabidopsis thaliana At4g13420 gene, complete cds
          Length = 2358

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 144  cccgtgaaccgagtgacgtc 163
            ||||||||||||||||||||
Sbjct: 1789 cccgtgaaccgagtgacgtc 1808

>emb|AL449264.18| Human DNA sequence from clone RP11-485H8 on chromosome 1 Contains the 5'
              end of the CASQ2 gene for calsequestrin 2 (cardiac muscle),
              the NHLH2 gene for nescient helix loop helix 2, a
              heterogeneous nuclear ribonucleoprotein A1 (HNRPA1)
              pseudogene and two CpG islands, complete sequence
          Length = 164655

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 184    ccccgcggcgcaccccgccc 203
              ||||||||||||||||||||
Sbjct: 104473 ccccgcggcgcaccccgccc 104492

>emb|AL161536.2|ATCHRIV36 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 36
          Length = 199634

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   cccgtgaaccgagtgacgtc 163
             ||||||||||||||||||||
Sbjct: 84348 cccgtgaaccgagtgacgtc 84329

>emb|AL049608.1|ATT9E8 Arabidopsis thaliana DNA chromosome 4, BAC clone T9E8, partial sequence
             (ESSA project)
          Length = 95432

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   cccgtgaaccgagtgacgtc 163
             ||||||||||||||||||||
Sbjct: 68369 cccgtgaaccgagtgacgtc 68350

>gb|BC028729.1| Homo sapiens cDNA clone IMAGE:4811590
          Length = 4177

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 184 ccccgcggcgcaccccgccc 203
           ||||||||||||||||||||
Sbjct: 62  ccccgcggcgcaccccgccc 81

>gb|BC096361.1| Homo sapiens nescient helix loop helix 2, mRNA (cDNA clone
           MGC:117068 IMAGE:40010652), complete cds
          Length = 1051

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 184 ccccgcggcgcaccccgccc 203
           ||||||||||||||||||||
Sbjct: 889 ccccgcggcgcaccccgccc 870

>gb|BC096359.1| Homo sapiens nescient helix loop helix 2, mRNA (cDNA clone
           MGC:117066 IMAGE:40010648), complete cds
          Length = 1051

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 184 ccccgcggcgcaccccgccc 203
           ||||||||||||||||||||
Sbjct: 889 ccccgcggcgcaccccgccc 870

>gb|BC096362.1| Homo sapiens nescient helix loop helix 2, mRNA (cDNA clone
           MGC:117069 IMAGE:40010653), complete cds
          Length = 1051

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 184 ccccgcggcgcaccccgccc 203
           ||||||||||||||||||||
Sbjct: 889 ccccgcggcgcaccccgccc 870

>gb|BC096360.1| Homo sapiens nescient helix loop helix 2, mRNA (cDNA clone
           MGC:117067 IMAGE:40010649), complete cds
          Length = 1048

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 184 ccccgcggcgcaccccgccc 203
           ||||||||||||||||||||
Sbjct: 889 ccccgcggcgcaccccgccc 870

>dbj|AK056621.1| Homo sapiens cDNA FLJ32059 fis, clone NTONG2001676, highly similar to
            HELIX-LOOP-HELIX PROTEIN 2
          Length = 2657

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 184  ccccgcggcgcaccccgccc 203
            ||||||||||||||||||||
Sbjct: 1403 ccccgcggcgcaccccgccc 1384

>emb|CR376826.12| Zebrafish DNA sequence from clone DKEYP-78F1 in linkage group 20,
             complete sequence
          Length = 153344

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   atggaaaataagttgaatat 261
             ||||||||||||||||||||
Sbjct: 22771 atggaaaataagttgaatat 22790

>gb|AF129478.1| Arabidopsis thaliana cultivar Columbia K+ transporter HAK5 (HAK5)
            mRNA, complete cds
          Length = 2534

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 144  cccgtgaaccgagtgacgtc 163
            ||||||||||||||||||||
Sbjct: 1798 cccgtgaaccgagtgacgtc 1817

>emb|CR974479.17| Pig DNA sequence from clone PigE-150P18 on chromosome 7, complete
              sequence
          Length = 152730

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      actggcacgcgcacacacac 22
              ||||||||||||||||||||
Sbjct: 115828 actggcacgcgcacacacac 115809

>gb|AC157939.15| Mus musculus chromosome 3, clone RP23-51P17, complete sequence
          Length = 240367

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      actggcacgcgcacacacac 22
              ||||||||||||||||||||
Sbjct: 138077 actggcacgcgcacacacac 138096

>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 64      gggcgacgccgcctccgccg 83
               ||||||||||||||||||||
Sbjct: 2243281 gggcgacgccgcctccgccg 2243300

>emb|AL805910.7| Mouse DNA sequence from clone RP23-144K17 on chromosome 4, complete
             sequence
          Length = 200933

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     ctggcacgcgcacacacacc 23
             ||||||||||||||||||||
Sbjct: 65312 ctggcacgcgcacacacacc 65293

>gb|M97508.1|HUMHEN2A Homo sapiens helix-loop-helix protein (HEN2) gene, complete cds
          Length = 2156

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 184 ccccgcggcgcaccccgccc 203
           ||||||||||||||||||||
Sbjct: 883 ccccgcggcgcaccccgccc 864

>gb|M96740.1|HUMNSCL2A Human NSCL-2 gene sequence
          Length = 2519

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 184 ccccgcggcgcaccccgccc 203
           ||||||||||||||||||||
Sbjct: 961 ccccgcggcgcaccccgccc 942

>dbj|AB007959.1| Homo sapiens mRNA, chromosome 1 specific transcript KIAA0490
          Length = 6075

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 184 ccccgcggcgcaccccgccc 203
           ||||||||||||||||||||
Sbjct: 101 ccccgcggcgcaccccgccc 120


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,849,468
Number of Sequences: 3902068
Number of extensions: 2849468
Number of successful extensions: 69508
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69332
Number of HSP's gapped (non-prelim): 176
length of query: 339
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 317
effective length of database: 17,147,199,772
effective search space: 5435662327724
effective search space used: 5435662327724
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)