>SUR1_CAEEL (P39745) Mitogen-activated protein kinase mpk-1 (EC 2.7.11.24) (MAP|
           kinase sur-1)
          Length = 444

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = +2

Query: 113 WRSRNPSAMPTTRCTTGPATGRPRAT----APGA 202
           W   N  A PTTR    P+ G P+AT    APG+
Sbjct: 4   WIPNNLCAQPTTRNAKPPSNGHPQATQQQSAPGS 37

>FLIF_CAUCR (Q04954) Flagellar M-ring protein|
          Length = 536

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 201 APGAVARGRPVAGPVVQRVVGIAEG 127
           APG +A   P  GP V R+V +A+G
Sbjct: 444 APGQIALAGPSGGPPVTRLVTLADG 468

>CATV_GVCP (O91466) Viral cathepsin (EC 3.4.22.50) (V-cath) (Cysteine|
           proteinase) (CP)
          Length = 333

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 95  TTGVRCWRSRNPSAMPTTRCTTGPATGRPRATAP 196
           TTG R    +NPSA   T C+       P+A  P
Sbjct: 92  TTGFRLGLKKNPSAFTMTECSVVVIKDEPQALLP 125


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.139    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,608,224
Number of Sequences: 219361
Number of extensions: 235597
Number of successful extensions: 1107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 80,573,946
effective HSP length: 45
effective length of database: 70,702,701
effective search space used: 1696864824
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)