>gb|AF466199.1| Sorghum bicolor putative receptor protein kinase,
aminoalcoholphosphotransferase, putative
growth-regulating factor 1, putative GAG-POL precursor,
putative GAG-POL precursor, putative RIRE2 orf3, putative
anthocyanin regulatory C1, putative protein T30F21.6,
putative copia polyprotein, putative copia polyprotein,
putative protein NP_196765.1, and gb protein genes,
complete cds; and putative zinc finger protein gene,
partial cds
Length = 144159
Score = 54.0 bits (27), Expect = 2e-04
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 106 acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 165
|||||| ||||||||||||| ||||||||| | | || ||||| |||||||| ||| ||
Sbjct: 7569 acgctggtggagatcaagaagtccttccgcaacgtcggcaacgtactgtacgattgggcc 7510
Query: 166 ggcgacg 172
|||||||
Sbjct: 7509 ggcgacg 7503
Score = 42.1 bits (21), Expect = 0.67
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 186 ctactgctcctggcgcggcgt 206
|||||||||||||||||||||
Sbjct: 7501 ctactgctcctggcgcggcgt 7481
>gb|AY530952.1| Zea mays unknown (Z576C20.2), putative heme oxygenase 1 (Z576C20.3),
anthocyanin biosynthesis regulatory protein Pl1_B73
(Z576C20.4), putative growth-regulating factor 1
(Z576C20.6), and putative aminoalcoholphosphotransferase
(Z576C20.14) genes, complete cds; and putative receptor
protein kinase (Z576C20.21) gene, partial cds
Length = 155173
Score = 52.0 bits (26), Expect = 7e-04
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 107 cgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtccg 166
||||| ||||||||||||| ||||||||| | | || ||||| |||||||| ||| |||
Sbjct: 154331 cgctggtggagatcaagaagtccttccgcaacgtcggcaacgtactgtacgattgggccg 154390
Query: 167 gcgacg 172
||||||
Sbjct: 154391 gcgacg 154396
Score = 42.1 bits (21), Expect = 0.67
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 186 ctactgctcctggcgcggcgt 206
|||||||||||||||||||||
Sbjct: 154398 ctactgctcctggcgcggcgt 154418
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
Length = 2325379
Score = 40.1 bits (20), Expect = 2.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 132 ccgcgatgccgacaacgcgc 151
||||||||||||||||||||
Sbjct: 245630 ccgcgatgccgacaacgcgc 245611
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 703,854
Number of Sequences: 3902068
Number of extensions: 703854
Number of successful extensions: 44582
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44383
Number of HSP's gapped (non-prelim): 199
length of query: 210
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 188
effective length of database: 17,147,199,772
effective search space: 3223673557136
effective search space used: 3223673557136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)