ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl16d07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483229.1| Oryza sativa (japonica cultivar-group), mRNA 76 1e-10
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
3dbj|AP003883.3| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
4dbj|AK064868.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 1e-10
5gb|CP000136.1| Rhizobium etli CFN 42 plasmid p42c, complete sequ... 44 0.40
6gb|AC112791.3| Mus musculus BAC clone RP23-182O1 from 13, comple... 42 1.6
7gb|AC114827.4| Mus musculus BAC clone RP24-447F21 from 13, compl... 42 1.6
8gb|CP000133.1| Rhizobium etli CFN 42, complete genome 42 1.6
9gb|AC121975.3| Mus musculus BAC clone RP24-286J21 from chromosom... 40 6.3
10emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete ch... 40 6.3
11emb|Z71182.1|HS248J6 Human DNA sequence from clone RP1-248J6 on ... 40 6.3
12emb|AL592402.12| Human DNA sequence from clone RP11-554K11 on ch... 40 6.3
13gb|CP000088.1| Thermobifida fusca YX, complete genome 40 6.3
14gb|AC107462.5| Homo sapiens BAC clone RP11-338B9 from 4, complet... 40 6.3
15gb|CP000249.1| Frankia sp. CcI3, complete genome 40 6.3
16emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 6.3
17gb|AC103359.6| Mus musculus chromosome 8, clone RP24-365B9, comp... 40 6.3 
>ref|XM_483229.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2900

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 77/88 (87%), Gaps = 4/88 (4%)
 Strand = Plus / Plus

                                                                       
Query: 166 cacccgtctcggacccaggaccccaccgggctggatctagggtt-gcaaggggaggggtt 224
           |||||||||||| ||| ||||||||| |||||||||||||| || || |||   ||||||
Sbjct: 181 cacccgtctcggccccgggaccccactgggctggatctaggtttggcgagg---ggggtt 237

                                       
Query: 225 ctggaggcctccgccacgatggaggcgg 252
           ||||| ||||||||| ||||||||||||
Sbjct: 238 ctggaagcctccgccgcgatggaggcgg 265



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                       
Query: 278 cttcaaggccgacttcaccgactccggcgcctaccagctccgggagcgcatgcgggagaa 337
           ||||||||||||| |||||| | |||||| |  ||||||| | |||||| ||||||||||
Sbjct: 303 cttcaaggccgacctcaccggcgccggcgtcgtccagctcagcgagcgcgtgcgggagaa 362

                        
Query: 338 gctgcgtgagttc 350
           |||||| ||||||
Sbjct: 363 gctgcgggagttc 375
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 77/88 (87%), Gaps = 4/88 (4%)
 Strand = Plus / Plus

                                                                            
Query: 166      cacccgtctcggacccaggaccccaccgggctggatctagggtt-gcaaggggaggggtt 224
                |||||||||||| ||| ||||||||| |||||||||||||| || || |||   ||||||
Sbjct: 24931653 cacccgtctcggccccgggaccccactgggctggatctaggtttggcgagg---ggggtt 24931709

                                            
Query: 225      ctggaggcctccgccacgatggaggcgg 252
                ||||| ||||||||| ||||||||||||
Sbjct: 24931710 ctggaagcctccgccgcgatggaggcgg 24931737



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                            
Query: 278      cttcaaggccgacttcaccgactccggcgcctaccagctccgggagcgcatgcgggagaa 337
                ||||||||||||| |||||| | |||||| |  ||||||| | |||||| ||||||||||
Sbjct: 24931775 cttcaaggccgacctcaccggcgccggcgtcgtccagctcagcgagcgcgtgcgggagaa 24931834

                             
Query: 338      gctgcgtgagttc 350
                |||||| ||||||
Sbjct: 24931835 gctgcgggagttc 24931847
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>dbj|AP003883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1134_H03
          Length = 135914

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 77/88 (87%), Gaps = 4/88 (4%)
 Strand = Plus / Plus

                                                                         
Query: 166   cacccgtctcggacccaggaccccaccgggctggatctagggtt-gcaaggggaggggtt 224
             |||||||||||| ||| ||||||||| |||||||||||||| || || |||   ||||||
Sbjct: 33368 cacccgtctcggccccgggaccccactgggctggatctaggtttggcgagg---ggggtt 33424

                                         
Query: 225   ctggaggcctccgccacgatggaggcgg 252
             ||||| ||||||||| ||||||||||||
Sbjct: 33425 ctggaagcctccgccgcgatggaggcgg 33452



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                         
Query: 278   cttcaaggccgacttcaccgactccggcgcctaccagctccgggagcgcatgcgggagaa 337
             ||||||||||||| |||||| | |||||| |  ||||||| | |||||| ||||||||||
Sbjct: 33490 cttcaaggccgacctcaccggcgccggcgtcgtccagctcagcgagcgcgtgcgggagaa 33549

                          
Query: 338   gctgcgtgagttc 350
             |||||| ||||||
Sbjct: 33550 gctgcgggagttc 33562
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>dbj|AK064868.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000I21, full
           insert sequence
          Length = 2901

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 77/88 (87%), Gaps = 4/88 (4%)
 Strand = Plus / Plus

                                                                       
Query: 166 cacccgtctcggacccaggaccccaccgggctggatctagggtt-gcaaggggaggggtt 224
           |||||||||||| ||| ||||||||| |||||||||||||| || || |||   ||||||
Sbjct: 181 cacccgtctcggccccgggaccccactgggctggatctaggtttggcgagg---ggggtt 237

                                       
Query: 225 ctggaggcctccgccacgatggaggcgg 252
           ||||| ||||||||| ||||||||||||
Sbjct: 238 ctggaagcctccgccgcgatggaggcgg 265



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                       
Query: 278 cttcaaggccgacttcaccgactccggcgcctaccagctccgggagcgcatgcgggagaa 337
           ||||||||||||| |||||| | |||||| |  ||||||| | |||||| ||||||||||
Sbjct: 303 cttcaaggccgacctcaccggcgccggcgtcgtccagctcagcgagcgcgtgcgggagaa 362

                        
Query: 338 gctgcgtgagttc 350
           |||||| ||||||
Sbjct: 363 gctgcgggagttc 375
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>gb|CP000136.1| Rhizobium etli CFN 42 plasmid p42c, complete sequence
          Length = 250948

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 49     tccaggcgccggcgcctcctcc 70
              ||||||||||||||||||||||
Sbjct: 202702 tccaggcgccggcgcctcctcc 202723
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>gb|AC112791.3| Mus musculus BAC clone RP23-182O1 from 13, complete sequence
          Length = 208443

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 406    gcgaggacgaggccaggaagg 426
              |||||||||||||||||||||
Sbjct: 206848 gcgaggacgaggccaggaagg 206868
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>gb|AC114827.4| Mus musculus BAC clone RP24-447F21 from 13, complete sequence
          Length = 157432

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 406  gcgaggacgaggccaggaagg 426
            |||||||||||||||||||||
Sbjct: 2968 gcgaggacgaggccaggaagg 2988
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 275     catcttcaaggccgacttcaccgac 299
               |||||||||||||||| ||||||||
Sbjct: 3089134 catcttcaaggccgacatcaccgac 3089158
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>gb|AC121975.3| Mus musculus BAC clone RP24-286J21 from chromosome 8, complete sequence
          Length = 174928

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 53    ggcgccggcgcctcctcccggctc 76
             |||||| |||||||||||||||||
Sbjct: 18483 ggcgcccgcgcctcctcccggctc 18506
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>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12
          Length = 323450

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 275    catcttcaaggccgacttcaccga 298
              |||||||||||||||| |||||||
Sbjct: 129757 catcttcaaggccgacatcaccga 129780
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>emb|Z71182.1|HS248J6 Human DNA sequence from clone RP1-248J6 on chromosome X, complete
            sequence
          Length = 76552

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 35   accccatccccacctccagg 54
            ||||||||||||||||||||
Sbjct: 5619 accccatccccacctccagg 5600
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>emb|AL592402.12| Human DNA sequence from clone RP11-554K11 on chromosome 1 Contains a
             processed pseudogene similar to ribosomal protein L31
             (RPL31), complete sequence
          Length = 200461

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    ccccatccccacctccaggc 55
             ||||||||||||||||||||
Sbjct: 50843 ccccatccccacctccaggc 50824
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 296     cgactccggcgcctaccagctccg 319
               ||||||| ||||||||||||||||
Sbjct: 3577059 cgactcccgcgcctaccagctccg 3577082
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>gb|AC107462.5| Homo sapiens BAC clone RP11-338B9 from 4, complete sequence
          Length = 192173

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 385    tgcttctcaggaatggaaaa 404
              ||||||||||||||||||||
Sbjct: 111640 tgcttctcaggaatggaaaa 111621
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    atccccacctccaggcgccg 59
             ||||||||||||||||||||
Sbjct: 25752 atccccacctccaggcgccg 25733
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 406     gcgaggacgaggccaggaag 425
               ||||||||||||||||||||
Sbjct: 3008541 gcgaggacgaggccaggaag 3008560
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>gb|AC103359.6| Mus musculus chromosome 8, clone RP24-365B9, complete sequence
          Length = 178620

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 53     ggcgccggcgcctcctcccggctc 76
              |||||| |||||||||||||||||
Sbjct: 153516 ggcgcccgcgcctcctcccggctc 153539


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,074,663
Number of Sequences: 3902068
Number of extensions: 3074663
Number of successful extensions: 65866
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65455
Number of HSP's gapped (non-prelim): 407
length of query: 466
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 444
effective length of database: 17,147,199,772
effective search space: 7613356698768
effective search space used: 7613356698768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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