ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl16d02 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X69333.1|TAU1H T.aestivum (clone pTAU1.3) U1 snRNA Length = 158 Score = 280 bits (141), Expect = 2e-72 Identities = 153/157 (97%) Strand = Plus / Plus Query: 3 ttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggcccaca 62 |||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||| Sbjct: 1 ttacctggacggggtcgacgagcgatcaagaaggctcgtggcctaggttagtggcccaca 60 Query: 63 tcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcataat 122 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ttgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcataat 120 Query: 123 ttgtggtagagggggtacgcgttcgcgcggcccctgc 159 ||||||||||||||||||||||||||||||||||||| Sbjct: 121 ttgtggtagagggggtacgcgttcgcgcggcccctgc 157
>emb|X69332.1|TAU1G T.aestivum (clone pTAU1.4) U1 snRNA Length = 142 Score = 246 bits (124), Expect = 3e-62 Identities = 136/140 (97%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| Sbjct: 3 acttacctggacggggtcgacgagcgatcaagaaggctcgtggcctaggttagtggccca 62 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 63 cattgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 122 Query: 121 atttgtggtagagggggtac 140 |||||||||||||||||||| Sbjct: 123 atttgtggtagagggggtac 142
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 234 bits (118), Expect = 1e-58 Identities = 151/162 (93%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||| | || |||||||||||| | ||||||||| |||||||||| Sbjct: 19364528 acttacctggacggggtctatggccgatcatgaagggtcatggcctaggctagtggccca 19364469 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| ||||||||||||||||||||| || |||||||||||||||||||||| |||||||| Sbjct: 19364468 cattgcacttggtgggtgcgctggcttaccatctccccaagtgggagagtggacgtcata 19364409 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 19364408 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 19364367 Score = 198 bits (100), Expect = 7e-48 Identities = 146/160 (91%), Gaps = 1/160 (0%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaagg-cccgtggcctaggttagtggccc 59 |||||||||||||||||| ||||||||||| ||||| ||||||||||||| | || ||| Sbjct: 31831664 acttacctggacggggtcaacgggcgatcaagaagggcccgtggcctaggccaatgcccc 31831605 Query: 60 acatcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcat 119 |||| |||||||||||| ||| |||| || |||||||||||||||||||||| ||||||| Sbjct: 31831604 acattgcacttggtgggcgcgttggcttaccatctccccaagtgggagagtggacgtcat 31831545 Query: 120 aatttgtggtagagggggtacgcgttcgcgcggcccctgc 159 |||||||| ||||||||||||||||||||||||||||||| Sbjct: 31831544 aatttgtgatagagggggtacgcgttcgcgcggcccctgc 31831505
>dbj|AP004879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0475F05 Length = 147522 Score = 234 bits (118), Expect = 1e-58 Identities = 151/162 (93%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||| | || |||||||||||| | ||||||||| |||||||||| Sbjct: 50019 acttacctggacggggtctatggccgatcatgaagggtcatggcctaggctagtggccca 49960 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| ||||||||||||||||||||| || |||||||||||||||||||||| |||||||| Sbjct: 49959 cattgcacttggtgggtgcgctggcttaccatctccccaagtgggagagtggacgtcata 49900 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 49899 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 49858
>dbj|AP004777.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0458B05 Length = 144917 Score = 234 bits (118), Expect = 1e-58 Identities = 151/162 (93%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||| | || |||||||||||| | ||||||||| |||||||||| Sbjct: 132326 acttacctggacggggtctatggccgatcatgaagggtcatggcctaggctagtggccca 132267 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| ||||||||||||||||||||| || |||||||||||||||||||||| |||||||| Sbjct: 132266 cattgcacttggtgggtgcgctggcttaccatctccccaagtgggagagtggacgtcata 132207 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 132206 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 132165
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 212 bits (107), Expect = 5e-52 Identities = 149/163 (91%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||||| ||| ||||| ||||||| |||||| || || ||||||| Sbjct: 35176319 acttacctggacggggtcgatgggtgatcaataaggcccatggcctgggctaatggccca 35176378 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| ||||||||||| |||| ||||||| |||||||||||||||||||||| |||||||| Sbjct: 35176379 cattgcacttggtggatgcgttggcctaccatctccccaagtgggagagtggacgtcata 35176438 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaaa 163 ||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 35176439 atttgtggtagagggggtacgcgttcgcgcggccccttccaaa 35176481 Score = 210 bits (106), Expect = 2e-51 Identities = 148/162 (91%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||| ||||||||||| |||||| ||||||||||| | ||||||| Sbjct: 34258594 acttacctggacggggtcaacgggcgatcaagaaggctcgtggcctaggccaatggccca 34258535 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||||||| ||| | || || |||||||||||||||||||||| |||||||| Sbjct: 34258534 cattgcacttggtgggcgcgttagcttaccatctccccaagtgggagagtggacgtcata 34258475 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 |||||||||||||||||||||||| ||||||||||||||||| Sbjct: 34258474 atttgtggtagagggggtacgcgtccgcgcggcccctgccaa 34258433 Score = 210 bits (106), Expect = 2e-51 Identities = 148/162 (91%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||| ||||||||||| |||||| ||||||||||| | ||||||| Sbjct: 34256963 acttacctggacggggtcaacgggcgatcaggaaggctcgtggcctaggccaatggccca 34256904 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||||||| ||| |||| || |||||||||||||||||||||| |||||||| Sbjct: 34256903 cattgcacttggtgggcgcgttggcttaccatctccccaagtgggagagtggacgtcata 34256844 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 ||||||||| ||||||||||||||||||||||||| |||||| Sbjct: 34256843 atttgtggtggagggggtacgcgttcgcgcggcccttgccaa 34256802 Score = 210 bits (106), Expect = 2e-51 Identities = 148/162 (91%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||| ||||||||||| |||||| ||||||||||| | ||||||| Sbjct: 34029359 acttacctggacggggtcaacgggcgatcaagaaggctcgtggcctaggccaatggccca 34029418 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||||||| ||| |||| || |||||||||||||||||||||| |||||||| Sbjct: 34029419 cattgcacttggtgggcgcgttggcttaccatctccccaagtgggagagtggacgtcata 34029478 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 ||||||||||| |||||||||||| ||||||||||||||||| Sbjct: 34029479 atttgtggtagggggggtacgcgtccgcgcggcccctgccaa 34029520 Score = 194 bits (98), Expect = 1e-46 Identities = 146/162 (90%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 ||||||||||||||||||||||| |||||| ||||| ||||||||||| | | |||| || Sbjct: 1872929 acttacctggacggggtcgacggccgatcaagaagggccgtggcctagatcaatggctca 1872870 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||||| | ||| ||| || ||||||||| |||||||||||| |||||||| Sbjct: 1872869 cattgcacttggtgagcgcgttggtttaccatctccccgagtgggagagtggacgtcata 1872810 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1872809 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 1872768 Score = 186 bits (94), Expect = 3e-44 Identities = 142/158 (89%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 ||||||||||||||||||||||| |||||| ||||| ||||||||||| | | |||| || Sbjct: 1695628 acttacctggacggggtcgacggccgatcaagaagggccgtggcctagatcaatggctca 1695569 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||||| | ||| ||| || |||||||||||||||||||||| |||||||| Sbjct: 1695568 cattgcacttggtgagcgcgttggtttaccatctccccaagtgggagagtggacgtcata 1695509 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctg 158 ||||||| |||||||||||||||||||||||||||||| Sbjct: 1695508 atttgtgatagagggggtacgcgttcgcgcggcccctg 1695471 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 223 cggcggcgatggccggcgtcgg 244 |||||||||||||||||||||| Sbjct: 13083720 cggcggcgatggccggcgtcgg 13083699
>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete sequence Length = 156606 Score = 212 bits (107), Expect = 5e-52 Identities = 149/163 (91%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||||| ||| ||||| ||||||| |||||| || || ||||||| Sbjct: 55080 acttacctggacggggtcgatgggtgatcaataaggcccatggcctgggctaatggccca 55139 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| ||||||||||| |||| ||||||| |||||||||||||||||||||| |||||||| Sbjct: 55140 cattgcacttggtggatgcgttggcctaccatctccccaagtgggagagtggacgtcata 55199 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaaa 163 ||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 55200 atttgtggtagagggggtacgcgttcgcgcggccccttccaaa 55242
>gb|S72336.1| (wU1.1)=U1 snRNA [Triticum aestivum=wheat, snRNA, 162 nt] Length = 162 Score = 212 bits (107), Expect = 5e-52 Identities = 147/159 (92%), Gaps = 1/159 (0%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||||||||||||||| ||||||||||||| | ||| | |||| || Sbjct: 4 acttacctggacggggtcgacgggcgatcaagaaggcccgtggc-tgggtcaatggctca 62 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||||||||||| ||||| | |||||||||||||||||||||| |||||||| Sbjct: 63 cattgcacttggtgggtgcgttggcccaccatctccccaagtgggagagtggacgtcata 122 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgc 159 ||||||| ||||||||||||||||||||||||||||||| Sbjct: 123 atttgtgctagagggggtacgcgttcgcgcggcccctgc 161
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 212 bits (107), Expect = 5e-52 Identities = 149/163 (91%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||||| ||| ||||| ||||||| |||||| || || ||||||| Sbjct: 35266391 acttacctggacggggtcgatgggtgatcaataaggcccatggcctgggctaatggccca 35266450 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| ||||||||||| |||| ||||||| |||||||||||||||||||||| |||||||| Sbjct: 35266451 cattgcacttggtggatgcgttggcctaccatctccccaagtgggagagtggacgtcata 35266510 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaaa 163 ||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 35266511 atttgtggtagagggggtacgcgttcgcgcggccccttccaaa 35266553 Score = 210 bits (106), Expect = 2e-51 Identities = 148/162 (91%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||| ||||||||||| |||||| ||||||||||| | ||||||| Sbjct: 34349066 acttacctggacggggtcaacgggcgatcaagaaggctcgtggcctaggccaatggccca 34349007 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||||||| ||| | || || |||||||||||||||||||||| |||||||| Sbjct: 34349006 cattgcacttggtgggcgcgttagcttaccatctccccaagtgggagagtggacgtcata 34348947 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 |||||||||||||||||||||||| ||||||||||||||||| Sbjct: 34348946 atttgtggtagagggggtacgcgtccgcgcggcccctgccaa 34348905 Score = 210 bits (106), Expect = 2e-51 Identities = 148/162 (91%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||| ||||||||||| |||||| ||||||||||| | ||||||| Sbjct: 34347435 acttacctggacggggtcaacgggcgatcaggaaggctcgtggcctaggccaatggccca 34347376 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||||||| ||| |||| || |||||||||||||||||||||| |||||||| Sbjct: 34347375 cattgcacttggtgggcgcgttggcttaccatctccccaagtgggagagtggacgtcata 34347316 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 ||||||||| ||||||||||||||||||||||||| |||||| Sbjct: 34347315 atttgtggtggagggggtacgcgttcgcgcggcccttgccaa 34347274 Score = 210 bits (106), Expect = 2e-51 Identities = 148/162 (91%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||| ||||||||||| |||||| ||||||||||| | ||||||| Sbjct: 34119831 acttacctggacggggtcaacgggcgatcaagaaggctcgtggcctaggccaatggccca 34119890 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||||||| ||| |||| || |||||||||||||||||||||| |||||||| Sbjct: 34119891 cattgcacttggtgggcgcgttggcttaccatctccccaagtgggagagtggacgtcata 34119950 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 ||||||||||| |||||||||||| ||||||||||||||||| Sbjct: 34119951 atttgtggtagggggggtacgcgtccgcgcggcccctgccaa 34119992 Score = 194 bits (98), Expect = 1e-46 Identities = 146/162 (90%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 ||||||||||||||||||||||| |||||| ||||| ||||||||||| | | |||| || Sbjct: 1872927 acttacctggacggggtcgacggccgatcaagaagggccgtggcctagatcaatggctca 1872868 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||||| | ||| ||| || ||||||||| |||||||||||| |||||||| Sbjct: 1872867 cattgcacttggtgagcgcgttggtttaccatctccccgagtgggagagtggacgtcata 1872808 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1872807 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 1872766 Score = 186 bits (94), Expect = 3e-44 Identities = 142/158 (89%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 ||||||||||||||||||||||| |||||| ||||| ||||||||||| | | |||| || Sbjct: 1695626 acttacctggacggggtcgacggccgatcaagaagggccgtggcctagatcaatggctca 1695567 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||||| | ||| ||| || |||||||||||||||||||||| |||||||| Sbjct: 1695566 cattgcacttggtgagcgcgttggtttaccatctccccaagtgggagagtggacgtcata 1695507 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctg 158 ||||||| |||||||||||||||||||||||||||||| Sbjct: 1695506 atttgtgatagagggggtacgcgttcgcgcggcccctg 1695469 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 223 cggcggcgatggccggcgtcgg 244 |||||||||||||||||||||| Sbjct: 13080495 cggcggcgatggccggcgtcgg 13080474
>emb|X69329.1|TAU1D T.aestivum (clone pTAU1.1) U1 snRNA Length = 161 Score = 212 bits (107), Expect = 5e-52 Identities = 147/159 (92%), Gaps = 1/159 (0%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||||||||||||||| ||||||||||||| | ||| | |||| || Sbjct: 3 acttacctggacggggtcgacgggcgatcaagaaggcccgtggc-tgggtcaatggctca 61 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||||||||||| ||||| | |||||||||||||||||||||| |||||||| Sbjct: 62 cattgcacttggtgggtgcgttggcccaccatctccccaagtgggagagtggacgtcata 121 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgc 159 ||||||| ||||||||||||||||||||||||||||||| Sbjct: 122 atttgtgctagagggggtacgcgttcgcgcggcccctgc 160
>gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O14 genomic sequence, complete sequence Length = 178022 Score = 210 bits (106), Expect = 2e-51 Identities = 148/162 (91%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 ||||||||||||||||||||||| |||||| |||| |||||||||||| | ||||||| Sbjct: 70898 acttacctggacggggtcgacggccgatcaagaagagccgtggcctaggccaatggccca 70957 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||||||| ||| |||| || |||||||||||| ||||||||| |||||||| Sbjct: 70958 cattgcacttggtgggcgcgttggcttaccatctccccaagcgggagagtggacgtcata 71017 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 71018 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 71059
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 210 bits (106), Expect = 2e-51 Identities = 148/162 (91%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 ||||||||||||||||||||||| |||||| |||| |||||||||||| | ||||||| Sbjct: 20808499 acttacctggacggggtcgacggccgatcaagaagagccgtggcctaggccaatggccca 20808558 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||||||| ||| |||| || |||||||||||| ||||||||| |||||||| Sbjct: 20808559 cattgcacttggtgggcgcgttggcttaccatctccccaagcgggagagtggacgtcata 20808618 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 20808619 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 20808660
>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence Length = 172337 Score = 210 bits (106), Expect = 2e-51 Identities = 148/162 (91%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||| ||||||||||| |||||| ||||||||||| | ||||||| Sbjct: 28332 acttacctggacggggtcaacgggcgatcaagaaggctcgtggcctaggccaatggccca 28273 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||||||| ||| |||| || |||||||||||||||||||||| |||||||| Sbjct: 28272 cattgcacttggtgggcgcgttggcttaccatctccccaagtgggagagtggacgtcata 28213 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 ||||||||||| |||||||||||| ||||||||||||||||| Sbjct: 28212 atttgtggtagggggggtacgcgtccgcgcggcccctgccaa 28171
>gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genomic sequence, complete sequence Length = 143205 Score = 210 bits (106), Expect = 2e-51 Identities = 148/162 (91%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||| ||||||||||| |||||| ||||||||||| | ||||||| Sbjct: 78035 acttacctggacggggtcaacgggcgatcaggaaggctcgtggcctaggccaatggccca 78094 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||||||| ||| |||| || |||||||||||||||||||||| |||||||| Sbjct: 78095 cattgcacttggtgggcgcgttggcttaccatctccccaagtgggagagtggacgtcata 78154 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 ||||||||| ||||||||||||||||||||||||| |||||| Sbjct: 78155 atttgtggtggagggggtacgcgttcgcgcggcccttgccaa 78196 Score = 210 bits (106), Expect = 2e-51 Identities = 148/162 (91%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||| ||||||||||| |||||| ||||||||||| | ||||||| Sbjct: 76404 acttacctggacggggtcaacgggcgatcaagaaggctcgtggcctaggccaatggccca 76463 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||||||| ||| | || || |||||||||||||||||||||| |||||||| Sbjct: 76464 cattgcacttggtgggcgcgttagcttaccatctccccaagtgggagagtggacgtcata 76523 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 |||||||||||||||||||||||| ||||||||||||||||| Sbjct: 76524 atttgtggtagagggggtacgcgtccgcgcggcccctgccaa 76565
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 210 bits (106), Expect = 2e-51 Identities = 148/162 (91%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 ||||||||||||||||||||||| |||||| |||| |||||||||||| | ||||||| Sbjct: 20819763 acttacctggacggggtcgacggccgatcaagaagagccgtggcctaggccaatggccca 20819822 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||||||| ||| |||| || |||||||||||| ||||||||| |||||||| Sbjct: 20819823 cattgcacttggtgggcgcgttggcttaccatctccccaagcgggagagtggacgtcata 20819882 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 20819883 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 20819924
>dbj|AK073024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145P04, full insert sequence Length = 2856 Score = 208 bits (105), Expect = 7e-51 Identities = 147/161 (91%) Strand = Plus / Plus Query: 2 cttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggcccac 61 |||||||||||||||||||||| |||||| |||| |||||||||||| | |||||||| Sbjct: 3 cttacctggacggggtcgacggccgatcaagaagagccgtggcctaggccaatggcccac 62 Query: 62 atcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcataa 121 || |||||||||||| ||| |||| || |||||||||||| ||||||||| ||||||||| Sbjct: 63 attgcacttggtgggcgcgttggcttaccatctccccaagcgggagagtggacgtcataa 122 Query: 122 tttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 123 tttgtggtagagggggtacgcgttcgcgcggcccctgccaa 163
>emb|X69334.1|TAU1I T.aestivum (clone pTAU1.5) U1 snRNA Length = 161 Score = 206 bits (104), Expect = 3e-50 Identities = 147/160 (91%), Gaps = 1/160 (0%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||||||| ||||||| |||||| |||||||| ||| ||||| ||| Sbjct: 3 acttacctggacggggtcgacgagcgatcaagaaggctcgtggcctgggtcagtggtcca 62 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| ||||||||||| ||| |||||| | |||||||||||||||||||||| | |||||| Sbjct: 63 cattgcacttggtggatgc-ctggcccaccatctccccaagtgggagagtggatgtcata 121 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgcc 160 |||||||||||||||||||||||||||||||||||||||| Sbjct: 122 atttgtggtagagggggtacgcgttcgcgcggcccctgcc 161
>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0627E03 Length = 159861 Score = 198 bits (100), Expect = 7e-48 Identities = 146/160 (91%), Gaps = 1/160 (0%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaagg-cccgtggcctaggttagtggccc 59 |||||||||||||||||| ||||||||||| ||||| ||||||||||||| | || ||| Sbjct: 127462 acttacctggacggggtcaacgggcgatcaagaagggcccgtggcctaggccaatgcccc 127403 Query: 60 acatcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcat 119 |||| |||||||||||| ||| |||| || |||||||||||||||||||||| ||||||| Sbjct: 127402 acattgcacttggtgggcgcgttggcttaccatctccccaagtgggagagtggacgtcat 127343 Query: 120 aatttgtggtagagggggtacgcgttcgcgcggcccctgc 159 |||||||| ||||||||||||||||||||||||||||||| Sbjct: 127342 aatttgtgatagagggggtacgcgttcgcgcggcccctgc 127303
>gb|AC140005.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1004C08, complete sequence Length = 138054 Score = 194 bits (98), Expect = 1e-46 Identities = 146/162 (90%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 ||||||||||||||||||||||| |||||| ||||| ||||||||||| | | |||| || Sbjct: 97791 acttacctggacggggtcgacggccgatcaagaagggccgtggcctagatcaatggctca 97732 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||||| | ||| ||| || ||||||||| |||||||||||| |||||||| Sbjct: 97731 cattgcacttggtgagcgcgttggtttaccatctccccgagtgggagagtggacgtcata 97672 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 97671 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 97630
>gb|AC099399.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1006F06, complete sequence Length = 122218 Score = 194 bits (98), Expect = 1e-46 Identities = 146/162 (90%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 ||||||||||||||||||||||| |||||| ||||| ||||||||||| | | |||| || Sbjct: 102482 acttacctggacggggtcgacggccgatcaagaagggccgtggcctagatcaatggctca 102541 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||||| | ||| ||| || ||||||||| |||||||||||| |||||||| Sbjct: 102542 cattgcacttggtgagcgcgttggtttaccatctccccgagtgggagagtggacgtcata 102601 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 102602 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 102643
>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, clone:P0043E01 Length = 154128 Score = 186 bits (94), Expect = 3e-44 Identities = 142/158 (89%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 ||||||||||||||||||||||| |||||| ||||| ||||||||||| | | |||| || Sbjct: 108091 acttacctggacggggtcgacggccgatcaagaagggccgtggcctagatcaatggctca 108032 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||||| | ||| ||| || |||||||||||||||||||||| |||||||| Sbjct: 108031 cattgcacttggtgagcgcgttggtttaccatctccccaagtgggagagtggacgtcata 107972 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctg 158 ||||||| |||||||||||||||||||||||||||||| Sbjct: 107971 atttgtgatagagggggtacgcgttcgcgcggcccctg 107934
>emb|X69331.1|TAU1F T.aestivum (clone pTAU1.6) U1 snRNA Length = 139 Score = 182 bits (92), Expect = 4e-43 Identities = 129/140 (92%), Gaps = 1/140 (0%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||| Sbjct: 1 acttacctggacggggtcgacgggcgatcaagaaggcccgtggc-tgggtcgatggccca 59 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| Sbjct: 60 cattgcacttggtgggtgcgtcggcccatcatctccccaagtgggagaatgaacgtcata 119 Query: 121 atttgtggtagagggggtac 140 |||||||||||||||||||| Sbjct: 120 atttgtggtagagggggtac 139
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 180 bits (91), Expect = 2e-42 Identities = 146/163 (89%), Gaps = 1/163 (0%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 ||||||||||| ||||| |||||||||||| ||||||||||||||||| | | |||| || Sbjct: 37408716 acttacctggatggggtagacgggcgatcaagaaggcccgtggcctagatcaatggctca 37408657 Query: 61 catcgcacttggtgg-gtgcgctggcctatcatctccccaagtgggagagtgaacgtcat 119 ||| ||||||||| | ||| ||| || |||||||||||||||||||||| ||||||| Sbjct: 37408656 cattgcacttggtttagcgcgttggtttaccatctccccaagtgggagagtggacgtcat 37408597 Query: 120 aatttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37408596 aatttgtggtagagggggtacgcgttcgcgcggcccctgccaa 37408554 Score = 133 bits (67), Expect = 4e-28 Identities = 139/162 (85%), Gaps = 2/162 (1%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 ||||||||||||||||| | ||||||||| |||||| | |||||||| ||||||||| Sbjct: 36361178 acttacctggacggggttaatgggcgatcaagaaggctcatggcctagattagtggcctc 36361119 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||| | || |||| | ||| |||||||||||||||||| || |||||||| Sbjct: 36361118 cattgcacttaggaggaacgctcgtctaccatctccccaagtgggag--tggacgtcata 36361061 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 |||||||| |||||||||||||||||||||||||||| |||| Sbjct: 36361060 atttgtggcagagggggtacgcgttcgcgcggcccctaccaa 36361019
>dbj|AP003270.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0505D12 Length = 146951 Score = 180 bits (91), Expect = 2e-42 Identities = 146/163 (89%), Gaps = 1/163 (0%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 ||||||||||| ||||| |||||||||||| ||||||||||||||||| | | |||| || Sbjct: 3253 acttacctggatggggtagacgggcgatcaagaaggcccgtggcctagatcaatggctca 3194 Query: 61 catcgcacttggtgg-gtgcgctggcctatcatctccccaagtgggagagtgaacgtcat 119 ||| ||||||||| | ||| ||| || |||||||||||||||||||||| ||||||| Sbjct: 3193 cattgcacttggtttagcgcgttggtttaccatctccccaagtgggagagtggacgtcat 3134 Query: 120 aatttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3133 aatttgtggtagagggggtacgcgttcgcgcggcccctgccaa 3091
>dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0423B08 Length = 151490 Score = 180 bits (91), Expect = 2e-42 Identities = 146/163 (89%), Gaps = 1/163 (0%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 ||||||||||| ||||| |||||||||||| ||||||||||||||||| | | |||| || Sbjct: 120750 acttacctggatggggtagacgggcgatcaagaaggcccgtggcctagatcaatggctca 120691 Query: 61 catcgcacttggtgg-gtgcgctggcctatcatctccccaagtgggagagtgaacgtcat 119 ||| ||||||||| | ||| ||| || |||||||||||||||||||||| ||||||| Sbjct: 120690 cattgcacttggtttagcgcgttggtttaccatctccccaagtgggagagtggacgtcat 120631 Query: 120 aatttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 120630 aatttgtggtagagggggtacgcgttcgcgcggcccctgccaa 120588
>emb|X69328.1|TAU1C T.aestivum (clone pTAU1.2) U1 snRNA Length = 159 Score = 168 bits (85), Expect = 6e-39 Identities = 140/157 (89%), Gaps = 1/157 (0%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 ||||||||||||||||||||||| |||||| ||||| |||||||||| | | ||| | | Sbjct: 1 acttacctggacggggtcgacggccgatcaagaagggtcgtggcctagatcaatggtc-a 59 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||| ||||| | ||| ||||||| |||||||||||||||||||||| ||||| || Sbjct: 60 cattgcacctggtgagcgcgttggcctaccatctccccaagtgggagagtggacgtcgta 119 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccct 157 ||||||||||||||||||||||||||||||||||||| Sbjct: 120 atttgtggtagagggggtacgcgttcgcgcggcccct 156
>gb|AY108225.1| Zea mays PCO138486 mRNA sequence Length = 434 Score = 163 bits (82), Expect = 4e-37 Identities = 121/134 (90%) Strand = Plus / Plus Query: 10 gacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggcccacatcgcact 69 |||||||||||| ||| |||| ||||||||||||||||| | | |||||||||| ||||| Sbjct: 7 gacggggtcgactggctatcaagaaggcccgtggcctagatcaatggcccacattgcact 66 Query: 70 tggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcataatttgtggt 129 |||||| |||| |||| || |||||||||||||||||||||| ||||||||||||||||| Sbjct: 67 tggtggatgcgttggcttaccatctccccaagtgggagagtggacgtcataatttgtggt 126 Query: 130 agagggggtacgcg 143 ||| |||||||||| Sbjct: 127 agatggggtacgcg 140
>emb|AL731579.4|OSJN00225 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006A01, complete sequence Length = 143157 Score = 151 bits (76), Expect = 2e-33 Identities = 143/164 (87%), Gaps = 1/164 (0%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||| | ||||||||| ||||| || ||||||||| |||||||| Sbjct: 87943 acttacctggacggggtctatgggcgatcaagaaggtccatggcctaggctagtggcctc 87884 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||| || || ||||| || |||||||||||| ||||||||| |||||||| Sbjct: 87883 cattgcacttgggaggagcactggcttaccatctccccaagagggagagtggacgtcata 87824 Query: 121 atttgtgg-tagagggggtacgcgttcgcgcggcccctgccaaa 163 |||||||| ||||||||||||||| |||||||||||| ||||| Sbjct: 87823 atttgtggcaagagggggtacgcgtccgcgcggcccctaccaaa 87780 Score = 137 bits (69), Expect = 2e-29 Identities = 135/157 (85%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||| ||| ||||||||||||| | || || |||||| |||||||| Sbjct: 78760 acttacctggacggggccgatgggcgatcatgaaagtccatgacctaggctagtggcctc 78701 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 || |||||||| || || |||| || ||||||||||||||||||| || |||| ||| Sbjct: 78700 cactgcacttgggaggagcattggcttaccatctccccaagtgggagactggacgtgata 78641 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccct 157 |||||||| |||||||||||||||||||||||||||| Sbjct: 78640 atttgtggcagagggggtacgcgttcgcgcggcccct 78604 Score = 105 bits (53), Expect = 8e-20 Identities = 65/69 (94%) Strand = Plus / Minus Query: 90 catctccccaagtgggagagtgaacgtcataatttgtggtagagggggtacgcgttcgcg 149 |||||||||||||||||||||| || ||||||||||||| || ||||||||||||||||| Sbjct: 40545 catctccccaagtgggagagtggacatcataatttgtggaagtgggggtacgcgttcgcg 40486 Query: 150 cggcccctg 158 ||||||||| Sbjct: 40485 cggcccctg 40477
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 151 bits (76), Expect = 2e-33 Identities = 143/164 (87%), Gaps = 1/164 (0%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||| | ||||||||| ||||| || ||||||||| |||||||| Sbjct: 30108964 acttacctggacggggtctatgggcgatcaagaaggtccatggcctaggctagtggcctc 30108905 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||| || || ||||| || |||||||||||| ||||||||| |||||||| Sbjct: 30108904 cattgcacttgggaggagcactggcttaccatctccccaagagggagagtggacgtcata 30108845 Query: 121 atttgtgg-tagagggggtacgcgttcgcgcggcccctgccaaa 163 |||||||| ||||||||||||||| |||||||||||| ||||| Sbjct: 30108844 atttgtggcaagagggggtacgcgtccgcgcggcccctaccaaa 30108801 Score = 151 bits (76), Expect = 2e-33 Identities = 143/164 (87%), Gaps = 1/164 (0%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||| | ||||||||| ||||| || ||||||||| |||||||| Sbjct: 30048261 acttacctggacggggtctatgggcgatcaagaaggtccatggcctaggctagtggcctc 30048202 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||| || || ||||| || |||||||||||| ||||||||| |||||||| Sbjct: 30048201 cattgcacttgggaggagcactggcttaccatctccccaagagggagagtggacgtcata 30048142 Query: 121 atttgtgg-tagagggggtacgcgttcgcgcggcccctgccaaa 163 |||||||| ||||||||||||||| |||||||||||| ||||| Sbjct: 30048141 atttgtggcaagagggggtacgcgtccgcgcggcccctaccaaa 30048098 Score = 137 bits (69), Expect = 2e-29 Identities = 135/157 (85%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||| ||| ||||||||||||| | || || |||||| |||||||| Sbjct: 30039078 acttacctggacggggccgatgggcgatcatgaaagtccatgacctaggctagtggcctc 30039019 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 || |||||||| || || |||| || ||||||||||||||||||| || |||| ||| Sbjct: 30039018 cactgcacttgggaggagcattggcttaccatctccccaagtgggagactggacgtgata 30038959 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccct 157 |||||||| |||||||||||||||||||||||||||| Sbjct: 30038958 atttgtggcagagggggtacgcgttcgcgcggcccct 30038922 Score = 105 bits (53), Expect = 8e-20 Identities = 65/69 (94%) Strand = Plus / Minus Query: 90 catctccccaagtgggagagtgaacgtcataatttgtggtagagggggtacgcgttcgcg 149 |||||||||||||||||||||| || ||||||||||||| || ||||||||||||||||| Sbjct: 30000863 catctccccaagtgggagagtggacatcataatttgtggaagtgggggtacgcgttcgcg 30000804 Query: 150 cggcccctg 158 ||||||||| Sbjct: 30000803 cggcccctg 30000795
>emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNba0093F12, complete sequence Length = 186142 Score = 151 bits (76), Expect = 2e-33 Identities = 143/164 (87%), Gaps = 1/164 (0%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||| | ||||||||| ||||| || ||||||||| |||||||| Sbjct: 5375 acttacctggacggggtctatgggcgatcaagaaggtccatggcctaggctagtggcctc 5316 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||||| || || ||||| || |||||||||||| ||||||||| |||||||| Sbjct: 5315 cattgcacttgggaggagcactggcttaccatctccccaagagggagagtggacgtcata 5256 Query: 121 atttgtgg-tagagggggtacgcgttcgcgcggcccctgccaaa 163 |||||||| ||||||||||||||| |||||||||||| ||||| Sbjct: 5255 atttgtggcaagagggggtacgcgtccgcgcggcccctaccaaa 5212
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 149 bits (75), Expect = 6e-33 Identities = 141/163 (86%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||||| ||| ||||| |||| || |||||| | | | ||||| | Sbjct: 4003868 acttacctggacggggtcgatgggtgatcaagaagatccatggcctggatcaatggccta 4003809 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| ||||||||| || ||| ||| || |||||||||||||||||||||| ||||| || Sbjct: 4003808 cattgcacttggtaggcgcgttggtctgccatctccccaagtgggagagtggacgtcgta 4003749 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaaa 163 |||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 4003748 atttgtggtagaaggggtacgcgttcgtgcggcccctgccaaa 4003706 Score = 133 bits (67), Expect = 4e-28 Identities = 140/163 (85%), Gaps = 1/163 (0%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaa-ggcccgtggcctaggttagtggccc 59 |||||||||||||||||| | ||||||||| ||| ||| | |||||||| | | || | | Sbjct: 6499733 acttacctggacggggtcaatgggcgatcaagaaaggctcatggcctagatcaatgcctc 6499792 Query: 60 acatcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcat 119 |||| |||||| ||||||| | ||| || |||||||||||| ||||||||| ||||||| Sbjct: 6499793 acattgcactttgtgggtgggttggtttaccatctccccaagcgggagagtggacgtcat 6499852 Query: 120 aatttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 ||||||||| ||||||||||||||| |||||||||||| |||| Sbjct: 6499853 aatttgtggcagagggggtacgcgtccgcgcggcccctaccaa 6499895
>dbj|AP007257.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0019L07 Length = 131650 Score = 149 bits (75), Expect = 6e-33 Identities = 141/163 (86%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||||| ||| ||||| |||| || |||||| | | | ||||| | Sbjct: 47523 acttacctggacggggtcgatgggtgatcaagaagatccatggcctggatcaatggccta 47464 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| ||||||||| || ||| ||| || |||||||||||||||||||||| ||||| || Sbjct: 47463 cattgcacttggtaggcgcgttggtctgccatctccccaagtgggagagtggacgtcgta 47404 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaaa 163 |||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 47403 atttgtggtagaaggggtacgcgttcgtgcggcccctgccaaa 47361
>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0035I03 Length = 153749 Score = 149 bits (75), Expect = 6e-33 Identities = 141/163 (86%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||||||| ||| ||||| |||| || |||||| | | | ||||| | Sbjct: 109744 acttacctggacggggtcgatgggtgatcaagaagatccatggcctggatcaatggccta 109685 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| ||||||||| || ||| ||| || |||||||||||||||||||||| ||||| || Sbjct: 109684 cattgcacttggtaggcgcgttggtctgccatctccccaagtgggagagtggacgtcgta 109625 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaaa 163 |||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 109624 atttgtggtagaaggggtacgcgttcgtgcggcccctgccaaa 109582
>emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12, complete sequence Length = 179644 Score = 137 bits (69), Expect = 2e-29 Identities = 135/157 (85%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 |||||||||||||||| ||| ||||||||||||| | || || |||||| |||||||| Sbjct: 175830 acttacctggacggggccgatgggcgatcatgaaagtccatgacctaggctagtggcctc 175771 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 || |||||||| || || |||| || ||||||||||||||||||| || |||| ||| Sbjct: 175770 cactgcacttgggaggagcattggcttaccatctccccaagtgggagactggacgtgata 175711 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccct 157 |||||||| |||||||||||||||||||||||||||| Sbjct: 175710 atttgtggcagagggggtacgcgttcgcgcggcccct 175674 Score = 105 bits (53), Expect = 8e-20 Identities = 65/69 (94%) Strand = Plus / Minus Query: 90 catctccccaagtgggagagtgaacgtcataatttgtggtagagggggtacgcgttcgcg 149 |||||||||||||||||||||| || ||||||||||||| || ||||||||||||||||| Sbjct: 137615 catctccccaagtgggagagtggacatcataatttgtggaagtgggggtacgcgttcgcg 137556 Query: 150 cggcccctg 158 ||||||||| Sbjct: 137555 cggcccctg 137547
>dbj|AP003251.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0446B05 Length = 149145 Score = 133 bits (67), Expect = 4e-28 Identities = 139/162 (85%), Gaps = 2/162 (1%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 ||||||||||||||||| | ||||||||| |||||| | |||||||| ||||||||| Sbjct: 111055 acttacctggacggggttaatgggcgatcaagaaggctcatggcctagattagtggcctc 110996 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||| | || |||| | ||| |||||||||||||||||| || |||||||| Sbjct: 110995 cattgcacttaggaggaacgctcgtctaccatctccccaagtgggag--tggacgtcata 110938 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 |||||||| |||||||||||||||||||||||||||| |||| Sbjct: 110937 atttgtggcagagggggtacgcgttcgcgcggcccctaccaa 110896
>dbj|AP004127.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0005H10 Length = 142885 Score = 133 bits (67), Expect = 4e-28 Identities = 139/162 (85%), Gaps = 2/162 (1%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtggccca 60 ||||||||||||||||| | ||||||||| |||||| | |||||||| ||||||||| Sbjct: 13017 acttacctggacggggttaatgggcgatcaagaaggctcatggcctagattagtggcctc 12958 Query: 61 catcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcata 120 ||| |||||| | || |||| | ||| |||||||||||||||||| || |||||||| Sbjct: 12957 cattgcacttaggaggaacgctcgtctaccatctccccaagtgggag--tggacgtcata 12900 Query: 121 atttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 |||||||| |||||||||||||||||||||||||||| |||| Sbjct: 12899 atttgtggcagagggggtacgcgttcgcgcggcccctaccaa 12858
>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0690H04 Length = 137319 Score = 133 bits (67), Expect = 4e-28 Identities = 140/163 (85%), Gaps = 1/163 (0%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaa-ggcccgtggcctaggttagtggccc 59 |||||||||||||||||| | ||||||||| ||| ||| | |||||||| | | || | | Sbjct: 16109 acttacctggacggggtcaatgggcgatcaagaaaggctcatggcctagatcaatgcctc 16168 Query: 60 acatcgcacttggtgggtgcgctggcctatcatctccccaagtgggagagtgaacgtcat 119 |||| |||||| ||||||| | ||| || |||||||||||| ||||||||| ||||||| Sbjct: 16169 acattgcactttgtgggtgggttggtttaccatctccccaagcgggagagtggacgtcat 16228 Query: 120 aatttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 ||||||||| ||||||||||||||| |||||||||||| |||| Sbjct: 16229 aatttgtggcagagggggtacgcgtccgcgcggcccctaccaa 16271
>gb|AF488412.1| Sorghum bicolor BAC 131L1, complete sequence Length = 130987 Score = 121 bits (61), Expect = 1e-24 Identities = 118/137 (86%) Strand = Plus / Minus Query: 26 gatcatgaaggcccgtggcctaggttagtggcccacatcgcacttggtgggtgcgctggc 85 |||||||||| || |||||||||||||||||| ||| |||||||| || || || || Sbjct: 62190 gatcatgaagagccatggcctaggttagtggcctccattgcacttgggaggagcactagc 62131 Query: 86 ctatcatctccccaagtgggagagtgaacgtcataatttgtggtagagggggtacgcgtt 145 || |||||||| || |||||||||| |||||||||||||||| ||||||||||||||| Sbjct: 62130 ttaccatctccctaaatgggagagtggacgtcataatttgtggcggagggggtacgcgtt 62071 Query: 146 cgcgcggcccctgccaa 162 |||||||||||| |||| Sbjct: 62070 cgcgcggcccctaccaa 62054
>emb|X14419.1|LESNRU18 Tomato U1 small nuclear RNA gene U1.8 Length = 393 Score = 61.9 bits (31), Expect = 1e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggtt 51 |||||||||||||||||| | ||||||||||||| ||| ||||||||||| Sbjct: 180 acttacctggacggggtcaatgggcgatcatgaacacccatggcctaggtt 230 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 113 acgtcataatttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 |||||||||||||| | ||||||| |||||||||||||||||||||| Sbjct: 292 acgtcataatttgttgctgagggggcctgcgttcgcgcggcccctgccaa 341
>emb|X14416.1|RNSNRU15 Tomato U1 small nuclear RNA gene U1.5 Length = 385 Score = 61.9 bits (31), Expect = 1e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggtt 51 |||||||||||||||||| | ||||||||||| ||| || ||||||||||| Sbjct: 173 acttacctggacggggtctatgggcgatcatgtaggtccatggcctaggtt 223 Score = 46.1 bits (23), Expect = 0.064 Identities = 41/47 (87%) Strand = Plus / Plus Query: 116 tcataatttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 ||||||||||| | ||||||| | |||||||||| ||||||||||| Sbjct: 288 tcataatttgttgctgagggggcatgcgttcgcgcagcccctgccaa 334
>emb|X14415.1|LESNRU14 Tomato U1 small nuclear RNA gene U1.4 Length = 388 Score = 61.9 bits (31), Expect = 1e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggtt 51 |||||||||||||||||| | |||||||||||||| || ||||||||||| Sbjct: 177 acttacctggacggggtcaattggcgatcatgaaggtccatggcctaggtt 227 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 113 acgtcataatttgtggtagagggggtacgcgttcgcgcggcccctgccaa 162 |||||||||||||| | ||||||| |||||||||||||||||||||| Sbjct: 289 acgtcataatttgttgctgagggggcctgcgttcgcgcggcccctgccaa 338
>emb|AL161559.2|ATCHRIV59 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 59 Length = 199199 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctagg 49 ||||||||||||||||| ||||| |||||||||| |||||||||||| Sbjct: 152528 acttacctggacggggtttacgggtgatcatgaagatccgtggcctagg 152480
>emb|AL035394.1|ATF9D16 Arabidopsis thaliana DNA chromosome 4, BAC clone F9D16 (ESSAII project) Length = 119430 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctagg 49 ||||||||||||||||| ||||| |||||||||| |||||||||||| Sbjct: 16738 acttacctggacggggtttacgggtgatcatgaagatccgtggcctagg 16690
>emb|X06809.1|GMU1A Soybean gene for U1a small nuclear RNA Length = 529 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 113 acgtcataatttgtggtagagggggtacgcgttcgcgcggcccct 157 ||||||||||||||||||| ||||| ||||||||||||||||| Sbjct: 346 acgtcataatttgtggtagtgggggcctgcgttcgcgcggcccct 390 Score = 42.1 bits (21), Expect = 1.00 Identities = 42/49 (85%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctagg 49 |||||||||||||||||| | || ||||| ||||| || ||||||||| Sbjct: 234 acttacctggacggggtcaatggatgatcaagaaggtccatggcctagg 282
>emb|X14418.1|LESNRU17 Tomato U1 small nuclear RNA gene U1.7 Length = 394 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctagg 49 |||||||||||||||||| | |||||||||| ||| ||| ||||||||| Sbjct: 178 acttacctggacggggtcaatgggcgatcattaagacccatggcctagg 226
>gb|J03563.1|PHVUG1 P.vulgaris U1 small nuclear RNA gene Length = 605 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 113 acgtcataatttgtggtagagggggtacgcgttcgcgcggcccct 157 ||||||||||||||||||| ||||| ||||||||||||||||| Sbjct: 466 acgtcataatttgtggtagtgggggcctgcgttcgcgcggcccct 510
>gb|AY222070.1| Arabidopsis thaliana U1 snRNA gene, complete sequence Length = 158 Score = 56.0 bits (28), Expect = 7e-05 Identities = 43/48 (89%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctag 48 ||||||||||||||||||| ||| |||||||||| ||||||||||| Sbjct: 3 acttacctggacggggtcgttgggtgatcatgaagatccgtggcctag 50
>emb|X15926.1|PSSNU1A Pea U1 snRNA (clone pPSU1.1) Length = 162 Score = 56.0 bits (28), Expect = 7e-05 Identities = 40/44 (90%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggc 44 ||||||||||| |||||||| ||| |||||||||||||| |||| Sbjct: 3 acttacctggatggggtcgatgggtgatcatgaaggcccatggc 46
>emb|X06810.1|GMU1B Soybean gene for U1B small nuclear RNA Length = 532 Score = 54.0 bits (27), Expect = 3e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 96 cccaagtgggagagtgaacgtcataatttgtggtagagggggtacgcgttcgcgcggccc 155 ||||||||| |||| ||||||||||||||||||| ||||| |||||||||| |||| Sbjct: 358 cccaagtggcagagcctacgtcataatttgtggtagtgggggcttgcgttcgcgcagccc 417 Query: 156 ctgccaa 162 || |||| Sbjct: 418 cttccaa 424
>dbj|AB023028.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K20J1 Length = 36243 Score = 52.0 bits (26), Expect = 0.001 Identities = 56/66 (84%) Strand = Plus / Minus Query: 92 tctccccaagtgggagagtgaacgtcataatttgtggtagagggggtacgcgttcgcgcg 151 |||||||||||||||||| |||||| |||||||| |||||||| ||||||||||| Sbjct: 352 tctccccaagtgggagagcctgcgtcattatttgtggcagagggggcctgcgttcgcgcg 293 Query: 152 gcccct 157 | |||| Sbjct: 292 gtccct 287
>emb|X53175.1|ATU1ASNRN A.thaliana U1a snRNA Length = 819 Score = 52.0 bits (26), Expect = 0.001 Identities = 56/66 (84%) Strand = Plus / Plus Query: 92 tctccccaagtgggagagtgaacgtcataatttgtggtagagggggtacgcgttcgcgcg 151 |||||||||||||||||| |||||| |||||||| |||||||| ||||||||||| Sbjct: 674 tctccccaagtgggagagcctgcgtcattatttgtggcagagggggcctgcgttcgcgcg 733 Query: 152 gcccct 157 | |||| Sbjct: 734 gtccct 739
>emb|CT009508.6| M.truncatula DNA sequence from clone MTH2-76H16 on chromosome 3, complete sequence Length = 133910 Score = 50.1 bits (25), Expect = 0.004 Identities = 43/49 (87%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctagg 49 ||||||||||| |||||| | ||| ||||| |||||||| ||||||||| Sbjct: 97694 acttacctggatggggtcaatgggtgatcaagaaggcccatggcctagg 97742
>gb|AC119413.16| Medicago truncatula clone mth2-19p2, complete sequence Length = 113431 Score = 50.1 bits (25), Expect = 0.004 Identities = 43/49 (87%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctagg 49 ||||||||||| |||||| | ||| ||||| |||||||| ||||||||| Sbjct: 31118 acttacctggatggggtcaatgggtgatcaagaaggcccatggcctagg 31166
>emb|CR954195.2| Medicago truncatula chromosome 5 clone mth2-16p13, COMPLETE SEQUENCE Length = 116834 Score = 50.1 bits (25), Expect = 0.004 Identities = 43/49 (87%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctagg 49 ||||||||||| |||||| | ||| ||||| |||||||| ||||||||| Sbjct: 74476 acttacctggatggggtcaatgggtgatcaagaaggcccatggcctagg 74524
>gb|AC151529.20| Medicago truncatula clone mth2-7n23, complete sequence Length = 134908 Score = 50.1 bits (25), Expect = 0.004 Identities = 43/49 (87%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctagg 49 ||||||||||| |||||| | ||| ||||| |||||||| ||||||||| Sbjct: 84362 acttacctggatggggtcaatgggtgatcaagaaggcccatggcctagg 84314
>gb|AC149572.14| Medicago truncatula clone mth2-116e22, complete sequence Length = 120017 Score = 50.1 bits (25), Expect = 0.004 Identities = 43/49 (87%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctagg 49 ||||||||||| |||||| | ||| ||||| |||||||| ||||||||| Sbjct: 61716 acttacctggatggggtcaatgggtgatcaagaaggcccatggcctagg 61764
>emb|X14412.1|LESNRU11 Tomato U1 small nuclear RNA gene U1.1 Length = 397 Score = 50.1 bits (25), Expect = 0.004 Identities = 43/49 (87%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctagg 49 |||||||||||||||||| | ||||||||| ||| ||| ||||||||| Sbjct: 182 acttacctggacggggtcaatgggcgatcaataagacccatggcctagg 230 Score = 42.1 bits (21), Expect = 1.00 Identities = 39/45 (86%) Strand = Plus / Plus Query: 113 acgtcataatttgtggtagagggggtacgcgttcgcgcggcccct 157 |||||||||||||| | |||||||| |||||||||| |||||| Sbjct: 294 acgtcataatttgttgcagagggggcctgcgttcgcgcagcccct 338
>emb|CR962131.2| Medicago truncatula chromosome 5 clone mth2-69b10, COMPLETE SEQUENCE Length = 115407 Score = 50.1 bits (25), Expect = 0.004 Identities = 43/49 (87%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctagg 49 ||||||||||| |||||| | ||| ||||| |||||||| ||||||||| Sbjct: 44723 acttacctggatggggtcaatgggtgatcaagaaggcccatggcctagg 44771
>gb|DQ323045.1| Phaseolus vulgaris clone BAC-71F18, complete sequence Length = 157468 Score = 50.1 bits (25), Expect = 0.004 Identities = 40/45 (88%) Strand = Plus / Minus Query: 113 acgtcataatttgtggtagagggggtacgcgttcgcgcggcccct 157 ||||||||||||||||||| ||||| |||||||||||| |||| Sbjct: 49660 acgtcataatttgtggtagtgggggcctgcgttcgcgcggtccct 49616
>emb|CR962130.2| Medicago truncatula chromosome 5 clone mte1-63h20, COMPLETE SEQUENCE Length = 115239 Score = 50.1 bits (25), Expect = 0.004 Identities = 43/49 (87%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctagg 49 ||||||||||| |||||| | ||| ||||| |||||||| ||||||||| Sbjct: 66923 acttacctggatggggtcaatgggtgatcaggaaggcccatggcctagg 66875
>emb|Z11882.1|STSNRNA10 S.tuberosum U1snRNA variant gene U1-10 Length = 757 Score = 50.1 bits (25), Expect = 0.004 Identities = 43/49 (87%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctagg 49 |||||||||||||||||| | ||||||||| ||| ||| ||||||||| Sbjct: 355 acttacctggacggggtcaatgggcgatcaataagacccatggcctagg 403
>gb|AC148345.3| Medicago truncatula chromosome 7 BAC clone mth2-14a16, complete sequence Length = 105328 Score = 48.1 bits (24), Expect = 0.016 Identities = 42/48 (87%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctag 48 ||||||||||| |||||| | ||| ||||||||||||| |||||||| Sbjct: 23317 acttacctggatggggtcaatgggtgatcatgaaggcctatggcctag 23364
>emb|X15928.1|PSSNU1C Pea U1 snRNA (clone pPSU1.3) Length = 160 Score = 48.1 bits (24), Expect = 0.016 Identities = 39/44 (88%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggc 44 ||||||||||| |||||| | ||| |||||||||||||| |||| Sbjct: 3 acttacctggatggggtcaatgggtgatcatgaaggcccatggc 46
>gb|AC149488.1| Solanum demissum chromosome 11 clone PGEC542 map MAP_LOC, complete sequence Length = 117252 Score = 46.1 bits (23), Expect = 0.064 Identities = 35/39 (89%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggccc 39 |||||||| ||| ||||| | |||||||||||||||||| Sbjct: 16484 acttacctagacagggtcaatgggcgatcatgaaggccc 16522
>gb|AC011620.8|ATAC011620 Arabidopsis thaliana chromosome III BAC F18C1 genomic sequence, complete sequence Length = 100887 Score = 46.1 bits (23), Expect = 0.064 Identities = 47/55 (85%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtg 55 |||||||||||||||||| || ||||||| |||| | |||||||||| ||||| Sbjct: 49373 acttacctggacggggtcaactcgcgatcaagaagacgagtggcctaggctagtg 49319 Score = 46.1 bits (23), Expect = 0.064 Identities = 47/55 (85%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtg 55 |||||||||||||||||| || ||||||| |||| | |||||||||| ||||| Sbjct: 25324 acttacctggacggggtcaactcgcgatcaagaagacgagtggcctaggctagtg 25270
>gb|AC146914.9| Medicago truncatula clone mth2-57l14, complete sequence Length = 122769 Score = 46.1 bits (23), Expect = 0.064 Identities = 44/51 (86%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggtt 51 ||||||||||| |||||| | | | |||||||||||| | ||||||||||| Sbjct: 122146 acttacctggatggggtctatgagtgatcatgaaggctcatggcctaggtt 122096 Score = 42.1 bits (21), Expect = 1.00 Identities = 39/45 (86%) Strand = Plus / Minus Query: 116 tcataatttgtggtagagggggtacgcgttcgcgcggcccctgcc 160 ||||||||||| | ||||||| |||||||||||||||||||| Sbjct: 122031 tcataatttgttgctgagggggcctgcgttcgcgcggcccctgcc 121987
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 46.1 bits (23), Expect = 0.064 Identities = 23/23 (100%) Strand = Plus / Plus Query: 233 ggccggcgtcggagccgatggcg 255 ||||||||||||||||||||||| Sbjct: 1059520 ggccggcgtcggagccgatggcg 1059542
>gb|AC026875.4|AC026875 Genomic sequence for Arabidopsis thaliana BAC T6D22 from chromosome I, complete sequence Length = 120965 Score = 46.1 bits (23), Expect = 0.064 Identities = 47/55 (85%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtg 55 |||||||||||||||||| || ||||||| |||| | |||||||||| ||||| Sbjct: 94133 acttacctggacggggtcaactcgcgatcaagaagacgagtggcctaggctagtg 94079
>emb|X14414.1|LESNRU13 Tomato U1 small nuclear RNA gene U1.3 Length = 368 Score = 46.1 bits (23), Expect = 0.064 Identities = 44/51 (86%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggtt 51 |||||||||||||||||| | |||||||| ||| ||| ||||||||||| Sbjct: 154 acttacctggacggggtcaataggcgatcaataagacccatggcctaggtt 204
>emb|Z11883.1|STU1SN126 S.tuberosum U1snRNA variant genes U1-1, U1-2, U1-3, U1-4, U1-5 and U1-6 Length = 4421 Score = 46.1 bits (23), Expect = 0.064 Identities = 44/51 (86%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggtt 51 |||||||||||||||||| | |||| |||| ||| ||| ||||||||||| Sbjct: 1498 acttacctggacggggtcaatgggcaatcaataagacccatggcctaggtt 1548 Score = 46.1 bits (23), Expect = 0.064 Identities = 44/51 (86%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctaggtt 51 |||||||||||||||||| | || |||||| ||| ||| ||||||||||| Sbjct: 363 acttacctggacggggtcaatggacgatcaataagacccatggcctaggtt 413 Score = 42.1 bits (21), Expect = 1.00 Identities = 39/45 (86%) Strand = Plus / Plus Query: 113 acgtcataatttgtggtagagggggtacgcgttcgcgcggcccct 157 |||||||||||||| | || ||||| ||||||||||||||||| Sbjct: 475 acgtcataatttgttgcagtgggggcctgcgttcgcgcggcccct 519
>gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1113A07, from chromosome 3, complete sequence Length = 151173 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 223 cggcggcgatggccggcgtcgg 244 |||||||||||||||||||||| Sbjct: 142918 cggcggcgatggccggcgtcgg 142939
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 223 cggcggcgatggccggcgtcgg 244 |||||||||||||||||||||| Sbjct: 60167 cggcggcgatggccggcgtcgg 60146
>emb|AL391145.1|ATF1N13 Arabidopsis thaliana DNA chromosome 5, BAC clone F1N13 (ESSA project) Length = 74687 Score = 44.1 bits (22), Expect = 0.25 Identities = 43/50 (86%) Strand = Plus / Minus Query: 6 cctggacggggtcgacgggcgatcatgaaggcccgtggcctaggttagtg 55 ||||||| ||||| ||||| ||||||||| |||||||||||| ||||| Sbjct: 54081 cctggacagggtcaacgggtaatcatgaagatccgtggcctaggctagtg 54032
>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0006D11, complete sequence Length = 176637 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 223 cggcggcgatggccggcgtcgg 244 |||||||||||||||||||||| Sbjct: 161418 cggcggcgatggccggcgtcgg 161397
>emb|Z11881.1|STU1SN789 S.tuberosum U1snRNA variant genes U1-7, U1-8 and U1-9 Length = 2911 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatca 30 |||||||||||||||||| | ||||||||| Sbjct: 1517 acttacctggacggggtcaatgggcgatca 1546 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatca 30 |||||||||||||||||| | ||||||||| Sbjct: 317 acttacctggacggggtcaatgggcgatca 346
>dbj|AK099999.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134K18, full insert sequence Length = 3073 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 223 cggcggcgatggccggcgtcgg 244 |||||||||||||||||||||| Sbjct: 71 cggcggcgatggccggcgtcgg 92
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 cggcggcgatggccggcgtcg 243 ||||||||||||||||||||| Sbjct: 16070864 cggcggcgatggccggcgtcg 16070884
>dbj|AP005833.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1328_D07 Length = 155007 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 cggcggcgatggccggcgtcg 243 ||||||||||||||||||||| Sbjct: 71077 cggcggcgatggccggcgtcg 71097
>dbj|AB023033.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K6M13 Length = 77129 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 acttacctggacggggtcgac 21 ||||||||||||||||||||| Sbjct: 30350 acttacctggacggggtcgac 30330
>emb|X14413.1|LESNRU12 Tomato U1 small nuclear RNA gene U1.2 Length = 370 Score = 42.1 bits (21), Expect = 1.00 Identities = 42/49 (85%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggcctagg 49 |||||||||||||||||| ||||||||| ||| ||| ||||||||| Sbjct: 181 acttacctggacggggtcattgggcgatcaataagacccatggcctagg 229
>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16 Length = 349008 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 cggcggcgatggccggcgtc 242 |||||||||||||||||||| Sbjct: 152689 cggcggcgatggccggcgtc 152670
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 cggcggcgatggccggcgtc 242 |||||||||||||||||||| Sbjct: 75743 cggcggcgatggccggcgtc 75724
>gb|AC069421.9| Homo sapiens 3 BAC RP11-528A4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 157289 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 tcatctccccaagtgggaga 108 |||||||||||||||||||| Sbjct: 135024 tcatctccccaagtgggaga 135005
>gb|AC022394.7| Homo sapiens chromosome 10 clone RP11-325M24, complete sequence Length = 154064 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 117 cataatttgtggtagagggggtac 140 ||||||||||||||| |||||||| Sbjct: 46669 cataatttgtggtagtgggggtac 46692
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 ggagccgatggcggaggaga 262 |||||||||||||||||||| Sbjct: 6280661 ggagccgatggcggaggaga 6280680
>dbj|AP004002.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1116_C08 Length = 102317 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 ggagccgatggcggaggaga 262 |||||||||||||||||||| Sbjct: 31221 ggagccgatggcggaggaga 31240
>emb|X15927.1|PSSNU1B Pea U1 snRNA (clone pPSU1.2) Length = 160 Score = 40.1 bits (20), Expect = 3.9 Identities = 38/44 (86%) Strand = Plus / Plus Query: 1 acttacctggacggggtcgacgggcgatcatgaaggcccgtggc 44 ||||||||||| |||||| | ||| ||||| |||||||| |||| Sbjct: 3 acttacctggatggggtcaatgggtgatcaagaaggcccatggc 46 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,624,153 Number of Sequences: 3902068 Number of extensions: 1624153 Number of successful extensions: 34024 Number of sequences better than 10.0: 87 Number of HSP's better than 10.0 without gapping: 95 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33354 Number of HSP's gapped (non-prelim): 646 length of query: 300 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 278 effective length of database: 17,147,199,772 effective search space: 4766921536616 effective search space used: 4766921536616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
