ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl16c08 |
|---|---|
| Clone Library Name | barley_pub |
>Y1163_HAEIN (Q57252) Protein HI1163| Length = 1027 Score = 31.6 bits (70), Expect = 0.51 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +3 Query: 156 QPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDP 281 +P G ++H GFL + A++ A R A G PL VDP Sbjct: 826 KPNGKAMHIKGFLKRFSKTAQNQAEFLNRMAKLGIPLVGVDP 867
>NFAC4_HUMAN (Q14934) Nuclear factor of activated T-cells, cytoplasmic 4| (NF-ATc4) (NFATc4) (T cell transcription factor NFAT3) (NF-AT3) Length = 902 Score = 31.6 bits (70), Expect = 0.51 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 9/66 (13%) Frame = +3 Query: 153 PQPGGSSLHSPGFLLQPPDLARSTAIC------FRRAAAR---GWPLAAVDPRSAGTPSW 305 P PG SSL S F D A A C AA+R G PL + PR++ P W Sbjct: 169 PSPGSSSLSSWSFFSDASDEAALYAACDEVESELNEAASRFGLGSPLPS--PRASPRP-W 225 Query: 306 SPPVPW 323 +P PW Sbjct: 226 TPEDPW 231
>YDIJ_ECOLI (P77748) Hypothetical protein ydiJ| Length = 1018 Score = 31.6 bits (70), Expect = 0.51 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +3 Query: 159 PGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDP 281 P G + H GFL + A+ TA R A G P+ VDP Sbjct: 826 PNGKAQHIKGFLNRFAKTAKKTADFLNRMAKLGMPMVGVDP 866
>PO3F2_HUMAN (P20265) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 443 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Frame = -3 Query: 322 QGTGGLQEG---VPADLGSTAARGHPLAAARRKQMAVERARSGG 200 QG GG +E V D G+ + GHPL+ A + A+ GG Sbjct: 29 QGAGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSHGGGGG 72
>PO3F2_MOUSE (P31360) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 445 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Frame = -3 Query: 322 QGTGGLQEG---VPADLGSTAARGHPLAAARRKQMAVERARSGG 200 QG GG +E V D G+ + GHPL+ A + A+ GG Sbjct: 29 QGAGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSHGGGGG 72
>UBP51_HUMAN (Q70EK9) Ubiquitin carboxyl-terminal hydrolase 51 (EC 3.1.2.15)| (Ubiquitin thioesterase 51) (Ubiquitin-specific-processing protease 51) (Deubiquitinating enzyme 51) Length = 711 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/27 (51%), Positives = 14/27 (51%) Frame = +3 Query: 138 KP*PRPQPGGSSLHSPGFLLQPPDLAR 218 KP PRPQP S PG PP AR Sbjct: 103 KPRPRPQPRARSRSQPGLSAPPPPPAR 129
>KAPR_ASPFU (Q96UX3) cAMP-dependent protein kinase regulatory subunit (PKA| regulatory subunit) Length = 413 Score = 29.6 bits (65), Expect = 1.9 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 12/62 (19%) Frame = +3 Query: 165 GSSLHSPGFLLQPPDLARSTAICFRRAAARGWP------------LAAVDPRSAGTPSWS 308 G G ++PP AR TA AA +G+P +++P SAG+ SW+ Sbjct: 85 GQGSEGQGEHVEPPGGARPTA-----AANQGFPNNYALGRRTSVSAESLNPTSAGSDSWT 139 Query: 309 PP 314 PP Sbjct: 140 PP 141
>HUTI_CAUCR (P58079) Imidazolonepropionase (EC 3.5.2.7)| (Imidazolone-5-propionate hydrolase) Length = 401 Score = 28.9 bits (63), Expect = 3.3 Identities = 19/49 (38%), Positives = 23/49 (46%) Frame = -3 Query: 343 ATAAADCQGTGGLQEGVPADLGSTAARGHPLAAARRKQMAVERARSGGW 197 AT A QG G +++GV A LG A P AAA + A G W Sbjct: 13 ATLAPGRQGLGIVEDGVVACLGGRIAYAGPAAAAPTFEAAESIDVDGRW 61
>BRO1_EMENI (Q6XPR4) Vacuolar protein-sorting protein bro1 (BRO| domain-containing protein 1) Length = 1000 Score = 28.9 bits (63), Expect = 3.3 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Frame = +3 Query: 132 SAKP*PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWP-LAAVDPRSAGTPSWS 308 S +P P P GSS P PP ++ A A + P A P+ GTP Sbjct: 791 STEPKPPSVPPGSSTAGPAKAKSPPPPVKAPAYPTNIAPPKASPHFAPTVPQQHGTPVSH 850 Query: 309 PPVPW 323 P P+ Sbjct: 851 SPAPY 855
>HLES_DROME (Q02308) Protein hairless| Length = 1077 Score = 28.5 bits (62), Expect = 4.3 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Frame = +3 Query: 153 PQPGGSSLHSPG--FLLQPPDLARSTAICFRRAAARGWPLAAVDPRSAGTPSWSPPVPWQ 326 P PG S P + Q P L RS+ + + P SAG+P+ +PP Sbjct: 821 PSPGDRSASPPERRHMQQQPHLQRSSPLHYYMYPP---PPQVNGNGSAGSPTSAPPTSNS 877 Query: 327 SAAAVA 344 SAAAVA Sbjct: 878 SAAAVA 883
>CT055_MOUSE (Q8R184) Protein C20orf55 homolog| Length = 296 Score = 28.5 bits (62), Expect = 4.3 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 6/62 (9%) Frame = +3 Query: 123 PFHSAKP*PRPQPGGSSLHSPGFLLQPPDLARSTAIC---FRRAAA---RGWPLAAVDPR 284 P ++ P P PG ++ SPG +PP L RS + F RAAA R + +DP Sbjct: 159 PLPASPARPYPSPGTTTTSSPG---RPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPE 215 Query: 285 SA 290 A Sbjct: 216 EA 217
>PURL_PYRAE (Q8ZZJ7) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 697 Score = 28.5 bits (62), Expect = 4.3 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Frame = +3 Query: 180 SPGFLLQPPDLARSTAI--CFRRAAARGW-PLAAVDPRSAGTPSWSPPVPWQSAAAV 341 +P F P L + A +R A G PLAAVD + G+PS P WQ AV Sbjct: 437 NPRFTYLNPRLGAANAFIKAYRNVAVVGGRPLAAVDSINVGSPS-RPSAYWQFVEAV 492
>DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-related formin-1)| (DRF1) (mDIA1) (p140mDIA) Length = 1255 Score = 28.1 bits (61), Expect = 5.6 Identities = 21/66 (31%), Positives = 25/66 (37%) Frame = +3 Query: 123 PFHSAKP*PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDPRSAGTPS 302 P +A P P P PGG+ + P PP L S + G L P G P Sbjct: 666 PGATAIPPPPPLPGGTGIPPP-----PPPLPGSVGVPPPPPLPGGPGLPPPPPPFPGAPG 720 Query: 303 WSPPVP 320 PP P Sbjct: 721 IPPPPP 726
>UL52_PRVKA (Q85228) DNA helicase/primase complex protein (DNA replication| protein UL52) Length = 962 Score = 28.1 bits (61), Expect = 5.6 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Frame = -3 Query: 331 ADCQGTGGLQEGVPADLGSTAARGHPLAAA---RRKQMAVERARSGGWRRKPGEWRLDP 164 A G G +++ A L + A RG AAA RR ER GW R P E + P Sbjct: 373 APAMGAGYVEDRTYAALAADAPRGLCDAAAGLARRVTAVEERLAPHGWVRAPDEEQQQP 431
>FOXD1_MOUSE (Q61345) Forkhead box protein D1 (Forkhead-related protein FKHL8)| (Forkhead-related transcription factor 4) (FREAC-4) (Brain factor-2) (HFH-BF-2) Length = 456 Score = 28.1 bits (61), Expect = 5.6 Identities = 23/68 (33%), Positives = 29/68 (42%) Frame = +3 Query: 141 P*PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDPRSAGTPSWSPPVP 320 P P P G + + LQ P A +A+ AAA AA P S P PP P Sbjct: 262 PPPPPPACGYGAYGCAYGLQLPPCAPPSALFAAAAAAAA---AAFHPHSPPPPPPPPPPP 318 Query: 321 WQSAAAVA 344 +AA +A Sbjct: 319 PGAAAELA 326
>QUEA_RHOS4 (Q3J252) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 346 Score = 28.1 bits (61), Expect = 5.6 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 8/47 (17%) Frame = -3 Query: 295 VPADLGSTAARGHPLAAARRKQMAVERARSGGWRR--------KPGE 179 +PA L T RG A AR + +E A +GGWR KPGE Sbjct: 62 IPARLTGTRTRGE--AEARVEVTLMEPAAAGGWRAMAKPLRKLKPGE 106
>LSB6_YEAST (P42951) Phosphatidylinositol 4-kinase LSB6 (EC 2.7.1.67)| (PI4-kinase) (PtdIns-4-kinase) Length = 607 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -3 Query: 241 RRKQMAVERARSGGWRRKPGEWRLDPPGW 155 R K A++ S W+ P EWRL P GW Sbjct: 406 RLKLAAIDNGLSFPWKH-PDEWRLYPYGW 433
>ACHB3_RAT (P12391) Neuronal acetylcholine receptor protein, beta-3 subunit| precursor Length = 464 Score = 28.1 bits (61), Expect = 5.6 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Frame = +3 Query: 147 PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAAAR--GWPLAAVDPRSAGTPSWSPPVP 320 P G +S+ P L PD+ + F A R G + +S+GT SW+PP Sbjct: 100 PEEYGGINSIKVPSESLWLPDI-----VLFENADGRFEGSLMTKAIVKSSGTVSWTPPAS 154 Query: 321 WQSAAAV 341 ++S+ + Sbjct: 155 YKSSCTM 161
>ACHB3_MOUSE (Q8BMN3) Neuronal acetylcholine receptor protein, beta-3 subunit| precursor Length = 464 Score = 28.1 bits (61), Expect = 5.6 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Frame = +3 Query: 147 PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAAAR--GWPLAAVDPRSAGTPSWSPPVP 320 P G +S+ P L PD+ + F A R G + +S+GT SW+PP Sbjct: 100 PEDYGGINSIKVPSESLWLPDI-----VLFENADGRFEGSLMTKAIVKSSGTVSWTPPAS 154 Query: 321 WQSAAAV 341 ++S+ + Sbjct: 155 YKSSCTM 161
>MY18B_HUMAN (Q8IUG5) Myosin-18B (Myosin XVIIIb)| Length = 2567 Score = 27.7 bits (60), Expect = 7.3 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = -3 Query: 310 GLQEGVPADLGSTAARGH-PLAAARRKQMAVERARSG 203 G ++G+PA +GS A R + L RR Q V RSG Sbjct: 627 GRRDGLPAHIGSMAQRAYWALLNQRRDQSIVALGRSG 663
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 27.7 bits (60), Expect = 7.3 Identities = 16/39 (41%), Positives = 18/39 (46%) Frame = +3 Query: 162 GGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVD 278 GG SLH P F L ++A C A ARG P D Sbjct: 41 GGFSLHPPYFNLAEGARIAASATCGEEAPARGSPRPTED 79
>NIFA_AZOBR (P30667) Nif-specific regulatory protein| Length = 625 Score = 27.7 bits (60), Expect = 7.3 Identities = 17/51 (33%), Positives = 22/51 (43%) Frame = -3 Query: 337 AAADCQGTGGLQEGVPADLGSTAARGHPLAAARRKQMAVERARSGGWRRKP 185 AAA+ T + VP G+ AARG P + +A R R G P Sbjct: 491 AAANAPKTPAMPAPVPEPAGAAAARGRPARRVVPRPLAGLRRRPAGGSGPP 541
>Y1375_MYCTU (P71803) Hypothetical UPF0142 protein Rv1375/MT1419| Length = 439 Score = 27.7 bits (60), Expect = 7.3 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -3 Query: 310 GLQEGVPADLGSTAARGHPLAAARRKQMAVERARSGGWR 194 G +E +P+ + R H A AR+ + + RAR WR Sbjct: 337 GAREDLPSAIYHRFGRVHTYAKARKTSLRLNRARPTPWR 375
>PRT_DICLA (Q9PS27) Protamine| Length = 34 Score = 27.3 bits (59), Expect = 9.6 Identities = 17/35 (48%), Positives = 17/35 (48%) Frame = +2 Query: 236 PPGRRQGMAPCRRRSEVRRHPLLEPARSLAVRRRR 340 P RRQ P RRR RR E R VRRRR Sbjct: 1 PRRRRQASRPVRRRRRTRR-STAERRRRRVVRRRR 34
>PRTB_MUGCE (P08130) Protamine-M6/M7 (Mugiline beta)| Length = 33 Score = 27.3 bits (59), Expect = 9.6 Identities = 16/35 (45%), Positives = 18/35 (51%) Frame = +2 Query: 236 PPGRRQGMAPCRRRSEVRRHPLLEPARSLAVRRRR 340 P RR+ P RRR RR P+ R VRRRR Sbjct: 1 PRRRRETSRPIRRRRRARRAPIRR--RRRVVRRRR 33
>PACC_NEUCR (Q7RVQ8) pH-response transcription factor pacC/RIM101| Length = 621 Score = 27.3 bits (59), Expect = 9.6 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +3 Query: 177 HSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDPRSAGTPSWSP 311 HSP + +P +I A+ PL+A P SAGTP+ +P Sbjct: 393 HSPTYATRP-------SIDPYHGASLASPLSATSPHSAGTPAVTP 430
>SLP1_DROME (P32030) Fork head domain transcription factor slp1 (Sloppy paired| locus protein 1) Length = 322 Score = 27.3 bits (59), Expect = 9.6 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = +3 Query: 204 PDLARSTAICFRRAAARGWPLAAVDPRSAGTPSWS-PPVPWQSAAAVA 344 P +R+ +R+A P+ A P A PS+ P VP+ +AAA A Sbjct: 217 PGASRTRLAAYRQAIFS--PMMAASPYGAPAPSYGYPAVPFAAAAAAA 262
>BTBD7_MOUSE (Q8CFE5) BTB/POZ domain-containing protein 7| Length = 1130 Score = 27.3 bits (59), Expect = 9.6 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = +3 Query: 153 PQPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAA 272 P+PG ++ PG + PPD +T + + AA AA Sbjct: 808 PKPGPPPVYLPGVKVAPPDCTNTTGLGRQTVAAAAAAAAA 847 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,550,865 Number of Sequences: 219361 Number of extensions: 601064 Number of successful extensions: 2372 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2257 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2368 length of database: 80,573,946 effective HSP length: 90 effective length of database: 60,831,456 effective search space used: 1459954944 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
