ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl16c07 |
|---|---|
| Clone Library Name | barley_pub |
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 105 bits (261), Expect = 5e-23 Identities = 48/97 (49%), Positives = 66/97 (68%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 297 SRL VKNLP G E+R R++F+ G +TD + TKDGK R FIGF++ EEA ALN+ Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALNH 61 Query: 298 FNNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKKPE 408 F+ ++IDT++IT E + GDP PR WS+H+ K + Sbjct: 62 FHRSFIDTTRITVEFCKSFGDPSKPRAWSKHAQKSSQ 98 Score = 41.2 bits (95), Expect = 0.001 Identities = 27/102 (26%), Positives = 56/102 (54%), Gaps = 4/102 (3%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIR--TKDGKSRHLAFIGFRTNEEAAEA 288 +S++ V+N+P A+++ +RE+FS GE+ ++ + T G R F+ F T ++A +A Sbjct: 823 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKA 882 Query: 289 LNYF-NNTYIDTSKITCEIA-RKIGDPDAPRPWSRHSLKKPE 408 N ++T++ ++ E A ++ R +RH + P+ Sbjct: 883 FNALCHSTHLYGRRLVLEWADSEVTVQTLRRKTARHFQEPPK 924 Score = 34.7 bits (78), Expect = 0.089 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 4/84 (4%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK----SRHLAFIGFRTNEEAAEAL 291 L +KNL E+ L+ VFS+ G + + + K+ S F+ ++ E+A +AL Sbjct: 724 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 783 Query: 292 NYFNNTYIDTSKITCEIARKIGDP 363 +D K+ I+ + P Sbjct: 784 KQLQGHTVDGHKLEVRISERATKP 807
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 103 bits (256), Expect = 2e-22 Identities = 48/94 (51%), Positives = 64/94 (68%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 297 SRL VKNLP G E+R R++F+ G +TD + TKDGK R FIGF++ EEA +A + Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61 Query: 298 FNNTYIDTSKITCEIARKIGDPDAPRPWSRHSLK 399 FN ++IDTS+IT E + GDP PR WS+H+ K Sbjct: 62 FNKSFIDTSRITVEFCKSFGDPAKPRAWSKHAQK 95 Score = 40.4 bits (93), Expect = 0.002 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK----SRHLAFIGFRTNEEAAEAL 291 L +KNL E++L+EVFS+ G V + + K+ S F+ +R E+A +AL Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791 Query: 292 NYFNNTYIDTSKITCEIARKIGDP 363 +D K+ I+ + P Sbjct: 792 KQLQGHVVDGHKLEVRISERATKP 815 Score = 39.3 bits (90), Expect = 0.004 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIR--TKDGKSRHLAFIGFRTNEEAAEA 288 +S++ V+N+P A + +RE+FS GE+ ++ + T G R F+ F T ++A A Sbjct: 831 TSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRA 890 Query: 289 LN 294 N Sbjct: 891 FN 892 Score = 33.5 bits (75), Expect = 0.20 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Frame = +1 Query: 109 AMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKV-IRTKDGKSRHLAFIGFRTNEEAAE 285 A S RL V+NLP + E+ L ++FS+ G +++ I + K + AFI F E A + Sbjct: 399 AESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVK 458 Query: 286 A 288 A Sbjct: 459 A 459
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 96.3 bits (238), Expect = 2e-20 Identities = 45/83 (54%), Positives = 62/83 (74%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 297 SRL V+ LP + RLRE FS+KG VTD K++R DG SR F+G+R+ +EA +AL+Y Sbjct: 2 SRLIVRGLPSYLTDARLREHFSQKGAVTDVKLMRRPDGTSRKFGFVGYRSEQEAQQALDY 61 Query: 298 FNNTYIDTSKITCEIARKIGDPD 366 FN T+IDTS+I+ E+A+KIGD + Sbjct: 62 FNRTFIDTSRISIELAKKIGDEE 84
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 89.0 bits (219), Expect = 4e-18 Identities = 40/85 (47%), Positives = 61/85 (71%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 297 SRL VK LPK E++LRE FS++G+VTD K+++ ++G+SR AFIG+++ + A A+ Y Sbjct: 2 SRLIVKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKY 61 Query: 298 FNNTYIDTSKITCEIARKIGDPDAP 372 FN ++IDT++I E A+ DP P Sbjct: 62 FNKSFIDTARIEVEFAKTFSDPTVP 86 Score = 43.1 bits (100), Expect = 3e-04 Identities = 24/84 (28%), Positives = 44/84 (52%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 294 SS++ +KNLP A K L E+F G++ +V + D +R AF+ F +EA A++ Sbjct: 716 SSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEAETAMS 775 Query: 295 YFNNTYIDTSKITCEIARKIGDPD 366 ++ ++ + A + DP+ Sbjct: 776 QLEGVHLLGRRLVMQYAEQ--DPE 797
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 80.5 bits (197), Expect = 1e-15 Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 14/109 (12%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRK-----------GEVTDAKVIRTKDGKSRHLAFIGFR 264 SR+ VK LP E RLR++ ++ ++D K+++ +DG+SR AFIGFR Sbjct: 2 SRVIVKGLPIYLKEDRLRDLIEKRLTQKHQSTDVQSYLSDVKLMKNRDGESRRFAFIGFR 61 Query: 265 TNEEAAEALNYFNNTYIDTSKITCEIARKIGDPDAPRPW---SRHSLKK 402 E+A + +NYFN T++DTSKI +A+ DP P+P R +LK+ Sbjct: 62 DEEDAFDCVNYFNGTFVDTSKIEVSMAKSFADPRVPQPMREKRREALKR 110 Score = 40.0 bits (92), Expect = 0.002 Identities = 23/82 (28%), Positives = 42/82 (51%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYF 300 ++ VKNLP A K + E+FS G++ +V + D +R AF+ F +EA A++ Sbjct: 753 KIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQL 812 Query: 301 NNTYIDTSKITCEIARKIGDPD 366 ++ ++ E + DP+ Sbjct: 813 QGVHLLGRRLVMEFVEQ--DPE 832
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 77.8 bits (190), Expect = 9e-15 Identities = 40/107 (37%), Positives = 63/107 (58%), Gaps = 12/107 (11%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRK---------GEVTDAKVIRTKDGKSRHLAFIGFRTN 270 SR+ VK LP +E RLR F ++ ++TD K+++ K G SR AFIG+R+ Sbjct: 2 SRVIVKGLPIYLEEARLRAHFLKRLQQQGRGSEDQITDVKIVKDKSGNSRRFAFIGYRSE 61 Query: 271 EEAAEALNYFNNTYIDTSKITCEIARKIGDPDAPRPW---SRHSLKK 402 ++A +A+ YFN ++IDT++I +A+ DP P P R +LK+ Sbjct: 62 QDAFDAIEYFNGSFIDTARIEVAMAKSFADPRVPTPMREKRREALKR 108 Score = 42.4 bits (98), Expect = 4e-04 Identities = 26/96 (27%), Positives = 48/96 (50%) Frame = +1 Query: 112 MSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEAL 291 +S ++ VKNLP A K + E+FS G++ +V + D +R AF+ F EA A+ Sbjct: 710 ISGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPSEAENAM 769 Query: 292 NYFNNTYIDTSKITCEIARKIGDPDAPRPWSRHSLK 399 + ++ ++ + A + D D S+ ++K Sbjct: 770 DQLQGVHLLGRRLVMQYAEQESD-DVEEQISKMTMK 804
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 76.3 bits (186), Expect = 3e-14 Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 10/95 (10%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSR----------KGEVTDAKVIRTKDGKSRHLAFIGFRT 267 SRL VKNLP DE L++ FS ++TD KV+R +DGK+R F+GFR+ Sbjct: 2 SRLIVKNLPPYLDEAGLKKHFSTVKDPKSAGFAPSDITDVKVVRARDGKTRRFGFVGFRS 61 Query: 268 NEEAAEALNYFNNTYIDTSKITCEIARKIGDPDAP 372 +E A A+ YF+ ++I+++KI+ +A DP+ P Sbjct: 62 DETAEAAVKYFDTSFINSTKISVAVAMTFTDPNVP 96 Score = 33.9 bits (76), Expect = 0.15 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKV-IRTKDGKSRHLAFIGFRTNEEAAEA 288 + RL ++NL A E+ R++FS+ GE+ + + I TK G+ + A + F E A A Sbjct: 300 TGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAA 358
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 74.7 bits (182), Expect = 8e-14 Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 18/113 (15%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGE---------------VTDAKVIRTKDGKSRHLAF 252 SR+ VK LP + LRE F+++ +TD K++R ++G+SR F Sbjct: 2 SRIIVKGLPVYLTDDNLREHFTKRLRQKHSHQAVNGSGPDLITDVKILRDRNGESRRFGF 61 Query: 253 IGFRTNEEAAEALNYFNNTYIDTSKITCEIARKIGDPDAPRPWS---RHSLKK 402 IG+R E+A +A+ YFN ++I+TSKI +A+ DP P+P R +LK+ Sbjct: 62 IGYRNEEDAFDAVEYFNGSFINTSKIEVSMAKSFADPRVPQPMKEKRREALKR 114 Score = 40.4 bits (93), Expect = 0.002 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 2/91 (2%) Frame = +1 Query: 85 QHGNLA--ADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIG 258 Q GN ++ S ++ VKNLP A K + E+F+ G++ +V + D +R AF+ Sbjct: 750 QSGNTKTKSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVE 809 Query: 259 FRTNEEAAEALNYFNNTYIDTSKITCEIARK 351 F +EA A++ + ++ ++ + A + Sbjct: 810 FLLPKEAENAMDQLHGVHLLGRRLVMQYAEE 840
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 72.4 bits (176), Expect = 4e-13 Identities = 37/109 (33%), Positives = 65/109 (59%), Gaps = 14/109 (12%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRK-----------GEVTDAKVIRTKDGKSRHLAFIGFR 264 SR+ VK LP E L++ F+++ G +TD ++++ ++GKSR AFIG++ Sbjct: 2 SRVIVKGLPIYLTEPELQKHFNKRLITTHATSNVDGLITDLRILKNREGKSRRFAFIGYK 61 Query: 265 TNEEAAEALNYFNNTYIDTSKITCEIARKIGDPDAPRPW---SRHSLKK 402 ++A +A+NYF+ ++I TSKI ++A+ DP P+ R +LK+ Sbjct: 62 NEQDALDAVNYFDGSFIYTSKIEVDMAKSFADPRVPKSMKEKKREALKR 110 Score = 38.5 bits (88), Expect = 0.006 Identities = 20/69 (28%), Positives = 37/69 (53%) Frame = +1 Query: 109 AMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEA 288 A + ++ VKNLP A K + E+F+ G++ +V + D +R AF+ F +EA A Sbjct: 735 AKNGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFVLPKEAENA 794 Query: 289 LNYFNNTYI 315 ++ ++ Sbjct: 795 MDQLQGVHL 803
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 69.3 bits (168), Expect = 3e-12 Identities = 38/104 (36%), Positives = 64/104 (61%), Gaps = 7/104 (6%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRL----REVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAE 285 SR+ +KN+P+ D+++L + + E+TD V +TK+G SR AFIGF+ E+A + Sbjct: 2 SRIIIKNIPRYYDKEKLSTYLKSLPQLDAEITDVSVAKTKEGVSRRFAFIGFKNEEDADK 61 Query: 286 ALNYFNNTYIDTSKITCEIARKIGDPDAP---RPWSRHSLKKPE 408 A+ Y N +Y++TS+I E+ R + A RP+S+++ K E Sbjct: 62 AIRYLNKSYVETSRI--EVHRALDYRSANEKLRPYSKYASKNIE 103 Score = 40.4 bits (93), Expect = 0.002 Identities = 20/66 (30%), Positives = 36/66 (54%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 297 +++ +KNLP A +K ++ + G++ +V + D +R AF F T EAA A+ Sbjct: 721 TKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRA 780 Query: 298 FNNTYI 315 NT++ Sbjct: 781 LKNTHL 786
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 68.2 bits (165), Expect = 7e-12 Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 1/83 (1%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKG-EVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEAL 291 SSR+ VKNLP E R+ FS +G +VTD K+I +RH+ F+G+++ E+AA A+ Sbjct: 4 SSRIFVKNLPPTITEAEFRKHFSAEGRQVTDVKLI-----PARHIGFVGYKSAEDAARAV 58 Query: 292 NYFNNTYIDTSKITCEIARKIGD 360 YFN ++I S+I+ +IA+ I D Sbjct: 59 KYFNRSFIRMSRISVDIAKPIAD 81
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 60.5 bits (145), Expect = 2e-09 Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 1/94 (1%) Frame = +1 Query: 82 QQHGNLAADAM-SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIG 258 +Q+ AAD SS L VKNL +++L+E+FS G VT +KV+R +G S+ F+ Sbjct: 305 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVA 364 Query: 259 FRTNEEAAEALNYFNNTYIDTSKITCEIARKIGD 360 F T EEA EA++ + I++ + IA++ D Sbjct: 365 FATPEEATEAMSQLSGKMIESKPLYVAIAQRKED 398 Score = 45.1 bits (105), Expect = 7e-05 Identities = 22/79 (27%), Positives = 39/79 (49%) Frame = +1 Query: 82 QQHGNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGF 261 Q+ + A + + VKNL + + L+ F G++T A V++ +GKS+ F+ F Sbjct: 203 QERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNF 262 Query: 262 RTNEEAAEALNYFNNTYID 318 ++AA A+ N D Sbjct: 263 ENADDAARAVESLNGHKFD 281
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 60.1 bits (144), Expect = 2e-09 Identities = 34/91 (37%), Positives = 53/91 (58%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 294 S+R+ V LP +L++ F + VTDA V+ R + F+GF+++E A +A++ Sbjct: 3 STRVFVSGLPPTLTNDQLKKHFETRFHVTDAHVL-----PKRRIGFVGFKSSEAAQQAVS 57 Query: 295 YFNNTYIDTSKITCEIARKIGDPDAPRPWSR 387 YFN TY+ SKI+ +IA+ I A R SR Sbjct: 58 YFNKTYMRMSKISVDIAKPIDAEPAHRKDSR 88 Score = 30.0 bits (66), Expect = 2.2 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Frame = +1 Query: 94 NLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKV-IRTKDGKSRHLAFIGFRTN 270 N+ +S+RL V+NL E L VFS G++ + V T+ S+ A++ + Sbjct: 287 NIENIRISARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADP 346 Query: 271 EEAAEA 288 + A EA Sbjct: 347 DAAVEA 352
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 59.7 bits (143), Expect = 3e-09 Identities = 31/80 (38%), Positives = 49/80 (61%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 294 ++R+ V LP +LR FS + ++TDA V+ R + F+GF+++E A +A + Sbjct: 3 NTRVFVSGLPPTFTNDQLRMHFSSRFQITDAHVL-----PKRRIGFVGFKSSEAAQQAAS 57 Query: 295 YFNNTYIDTSKITCEIARKI 354 YFN TY+ SKI+ EIA+ I Sbjct: 58 YFNKTYVKMSKISVEIAKPI 77 Score = 37.0 bits (84), Expect = 0.018 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Frame = +1 Query: 94 NLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKV-IRTKDGKSRHLAFIGFRTN 270 N+ +SSRL V+NLP A E L VFS+ G++ + V T+ S+ A++ + Sbjct: 293 NIEHIRLSSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEP 352 Query: 271 EEAAEA 288 + A +A Sbjct: 353 DAAVQA 358 Score = 32.0 bits (71), Expect = 0.58 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 6/89 (6%) Frame = +1 Query: 112 MSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK------SRHLAFIGFRTNE 273 ++S L VKNL +R EVF A++ D K S F+ FRT Sbjct: 595 VTSTLFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKA 654 Query: 274 EAAEALNYFNNTYIDTSKITCEIARKIGD 360 +A AL + +D ++ + K D Sbjct: 655 QAQAALAAMDGYKLDQHELVVRASNKAMD 683
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 56.6 bits (135), Expect = 2e-08 Identities = 29/76 (38%), Positives = 45/76 (59%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 303 L VKNL D+++L E F+ G +T AKV+RT++GKS+ F+ F T EEA +A+ N Sbjct: 323 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKN 382 Query: 304 NTYIDTSKITCEIARK 351 + + IA++ Sbjct: 383 QQIVAGKPLYVAIAQR 398 Score = 43.1 bits (100), Expect = 3e-04 Identities = 19/78 (24%), Positives = 44/78 (56%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 297 + L VKN+ +++ +E+F++ G + A + + DGK + F+ + +E+A +A+ Sbjct: 218 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEA 277 Query: 298 FNNTYIDTSKITCEIARK 351 N++ ++ K+ A+K Sbjct: 278 LNDSELNGEKLYVGRAQK 295 Score = 43.1 bits (100), Expect = 3e-04 Identities = 21/72 (29%), Positives = 37/72 (51%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 294 S + +KNL D K L + FS G++ +K+ ++GKS+ F+ F A EA++ Sbjct: 124 SGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAID 183 Query: 295 YFNNTYIDTSKI 330 N ++ +I Sbjct: 184 ALNGMLLNGQEI 195
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 54.3 bits (129), Expect = 1e-07 Identities = 29/93 (31%), Positives = 47/93 (50%) Frame = +1 Query: 82 QQHGNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGF 261 Q+ N + + L +KNL D+++L+E+FS G VT +KV+ G SR F+ + Sbjct: 320 QERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAY 379 Query: 262 RTNEEAAEALNYFNNTYIDTSKITCEIARKIGD 360 EEA AL+ N I + +A++ D Sbjct: 380 SNPEEALRALSEMNGKMIGRKPLYIALAQRKED 412 Score = 48.1 bits (113), Expect = 8e-06 Identities = 24/58 (41%), Positives = 32/58 (55%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 303 VKNLPK E LR+ F + G ++ A V+R + G SR F+ F E AA A+ N Sbjct: 233 VKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290 Score = 39.7 bits (91), Expect = 0.003 Identities = 20/67 (29%), Positives = 31/67 (46%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KNL D K L E FS G + KV G+S+ F+ F E A A++ N Sbjct: 140 IKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGM 199 Query: 310 YIDTSKI 330 ++ ++ Sbjct: 200 LMNDKQV 206
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 53.5 bits (127), Expect = 2e-07 Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEAL 291 S+R+ V NL G D+ L+E+FS +G V DAKV+ +D G+SR F+ + +++E +A+ Sbjct: 206 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAI 265 Query: 292 NYFNNTYIDTSKITCEIARK 351 + N +D I A + Sbjct: 266 DSLNGVDLDGRSIRVSAAEE 285 Score = 40.0 bits (92), Expect = 0.002 Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNY 297 +L V NLP D L +F R G V +VI K G+SR F+ T EE A Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147 Query: 298 FNNTYID 318 FN ID Sbjct: 148 FNGYEID 154
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 52.8 bits (125), Expect = 3e-07 Identities = 29/76 (38%), Positives = 44/76 (57%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 303 L VKNL G D+ RLR+ FS G +T AKV+ T+ G S+ F+ F + EEA +A+ N Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMN 354 Query: 304 NTYIDTSKITCEIARK 351 + T + +A++ Sbjct: 355 GRIVSTKPLYVALAQR 370 Score = 49.3 bits (116), Expect = 3e-06 Identities = 25/74 (33%), Positives = 40/74 (54%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KN + D+KRLRE+FS G KV+ G+SR F+ + +EEA +A++ N Sbjct: 195 IKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGK 254 Query: 310 YIDTSKITCEIARK 351 ++ I A+K Sbjct: 255 EVNGRMIYVGRAQK 268 Score = 40.8 bits (94), Expect = 0.001 Identities = 22/67 (32%), Positives = 33/67 (49%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KNL + D K L + FS G + KV+ + G SR F+ F T E A A+ N Sbjct: 103 IKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGM 161 Query: 310 YIDTSKI 330 ++ K+ Sbjct: 162 LLNDRKV 168
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 52.0 bits (123), Expect = 5e-07 Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEAL 291 S+R+ V NL G D+ L+E+FS +G V DAKV+ +D G+SR F+ + + +E +A+ Sbjct: 207 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAI 266 Query: 292 NYFNNTYIDTSKITCEIARK 351 + N +D I A + Sbjct: 267 DSLNGIDLDGRSIRVSAAEE 286 Score = 40.4 bits (93), Expect = 0.002 Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNY 297 +L V NLP D L +F R G V +VI K G+SR F+ T EE A Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148 Query: 298 FNNTYID 318 FN ID Sbjct: 149 FNGYEID 155
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 52.0 bits (123), Expect = 5e-07 Identities = 28/76 (36%), Positives = 45/76 (59%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 303 L VKNL G D++RLR+ FS G +T AKV+ + G+S+ F+ F + EEA +A+ N Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVM-MEGGRSKGFGFVCFSSPEEATKAVTEMN 354 Query: 304 NTYIDTSKITCEIARK 351 + T + +A++ Sbjct: 355 GRIVATKPLYVALAQR 370 Score = 46.2 bits (108), Expect = 3e-05 Identities = 21/74 (28%), Positives = 42/74 (56%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KN + D++RL+++F + G KV+ + GKS+ F+ F +E+A +A++ N Sbjct: 195 IKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK 254 Query: 310 YIDTSKITCEIARK 351 ++ +I A+K Sbjct: 255 ELNGKQIYVGRAQK 268
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 51.2 bits (121), Expect = 9e-07 Identities = 28/76 (36%), Positives = 43/76 (56%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 303 L VKNL G D+ RLR+ FS G +T KV+ T+ G S+ F+ F + EEA +A+ N Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMN 354 Query: 304 NTYIDTSKITCEIARK 351 + T + +A++ Sbjct: 355 GRIVSTKPLYVALAQR 370 Score = 48.1 bits (113), Expect = 8e-06 Identities = 23/74 (31%), Positives = 39/74 (52%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KN + D+KRL+E+FS G KV+ G+SR F+ + +EEA +A+ N Sbjct: 195 IKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGK 254 Query: 310 YIDTSKITCEIARK 351 ++ + A+K Sbjct: 255 EVNGRMVYVGRAQK 268 Score = 40.0 bits (92), Expect = 0.002 Identities = 22/67 (32%), Positives = 33/67 (49%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KNL D K L + FS G++ KV+ + G SR F+ F T E A A+ N Sbjct: 103 IKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGM 161 Query: 310 YIDTSKI 330 ++ K+ Sbjct: 162 LLNDRKV 168
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 51.2 bits (121), Expect = 9e-07 Identities = 28/76 (36%), Positives = 45/76 (59%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 303 L VKNL G D++RLR+ FS G +T AKV+ + G+S+ F+ F + EEA +A+ N Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVM-MEGGRSKGFGFVCFSSPEEATKAVTEMN 354 Query: 304 NTYIDTSKITCEIARK 351 + T + +A++ Sbjct: 355 GRIVATKPLYVALAQR 370 Score = 47.4 bits (111), Expect = 1e-05 Identities = 22/74 (29%), Positives = 42/74 (56%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KN + D++RL+E+F + G KV+ + GKS+ F+ F +E+A +A++ N Sbjct: 195 IKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK 254 Query: 310 YIDTSKITCEIARK 351 ++ +I A+K Sbjct: 255 ELNGKQIYVGRAQK 268 Score = 42.4 bits (98), Expect = 4e-04 Identities = 22/67 (32%), Positives = 34/67 (50%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KNL K D K L + FS G + KV+ ++G S+ F+ F T E A A+ N Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGM 161 Query: 310 YIDTSKI 330 ++ K+ Sbjct: 162 LLNDRKV 168
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 51.2 bits (121), Expect = 9e-07 Identities = 28/76 (36%), Positives = 45/76 (59%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 303 L VKNL G D++RLR+ FS G +T AKV+ + G+S+ F+ F + EEA +A+ N Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVM-MEGGRSKGFGFVCFSSPEEATKAVTEMN 354 Query: 304 NTYIDTSKITCEIARK 351 + T + +A++ Sbjct: 355 GRIVATKPLYVALAQR 370 Score = 47.4 bits (111), Expect = 1e-05 Identities = 22/74 (29%), Positives = 42/74 (56%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KN + D++RL+E+F + G KV+ + GKS+ F+ F +E+A +A++ N Sbjct: 195 IKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK 254 Query: 310 YIDTSKITCEIARK 351 ++ +I A+K Sbjct: 255 ELNGKQIYVGRAQK 268 Score = 42.4 bits (98), Expect = 4e-04 Identities = 22/67 (32%), Positives = 34/67 (50%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KNL K D K L + FS G + KV+ ++G S+ F+ F T E A A+ N Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGM 161 Query: 310 YIDTSKI 330 ++ K+ Sbjct: 162 LLNDRKV 168
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 51.2 bits (121), Expect = 9e-07 Identities = 28/76 (36%), Positives = 45/76 (59%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 303 L VKNL G D++RLR+ FS G +T AKV+ + G+S+ F+ F + EEA +A+ N Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVM-MEGGRSKGFGFVCFSSPEEATKAVTEMN 354 Query: 304 NTYIDTSKITCEIARK 351 + T + +A++ Sbjct: 355 GRIVATKPLYVALAQR 370 Score = 46.2 bits (108), Expect = 3e-05 Identities = 21/74 (28%), Positives = 42/74 (56%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KN + D++RL+++F + G KV+ + GKS+ F+ F +E+A +A++ N Sbjct: 195 IKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK 254 Query: 310 YIDTSKITCEIARK 351 ++ +I A+K Sbjct: 255 ELNGKQIYVGRAQK 268 Score = 42.4 bits (98), Expect = 4e-04 Identities = 22/67 (32%), Positives = 34/67 (50%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KNL K D K L + FS G + KV+ ++G S+ F+ F T E A A+ N Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGM 161 Query: 310 YIDTSKI 330 ++ K+ Sbjct: 162 LLNDRKV 168
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 51.2 bits (121), Expect = 9e-07 Identities = 28/76 (36%), Positives = 45/76 (59%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 303 L VKNL G D++RLR+ FS G +T AKV+ + G+S+ F+ F + EEA +A+ N Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVM-MEGGRSKGFGFVCFSSPEEATKAVTEMN 354 Query: 304 NTYIDTSKITCEIARK 351 + T + +A++ Sbjct: 355 GRIVATKPLYVALAQR 370 Score = 46.2 bits (108), Expect = 3e-05 Identities = 21/74 (28%), Positives = 42/74 (56%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KN + D++RL+++F + G KV+ + GKS+ F+ F +E+A +A++ N Sbjct: 195 IKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK 254 Query: 310 YIDTSKITCEIARK 351 ++ +I A+K Sbjct: 255 ELNGKQIYVGRAQK 268 Score = 42.4 bits (98), Expect = 4e-04 Identities = 22/67 (32%), Positives = 34/67 (50%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KNL K D K L + FS G + KV+ ++G S+ F+ F T E A A+ N Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGM 161 Query: 310 YIDTSKI 330 ++ K+ Sbjct: 162 LLNDRKV 168
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 50.8 bits (120), Expect = 1e-06 Identities = 27/69 (39%), Positives = 39/69 (56%) Frame = +1 Query: 97 LAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEE 276 L A + S + V NL K+L+EVFS G V A ++ KDGKSR + + F + E Sbjct: 195 LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIE 254 Query: 277 AAEALNYFN 303 A +A++ FN Sbjct: 255 AVQAISMFN 263 Score = 33.5 bits (75), Expect = 0.20 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRK-GEVTDAKVIRTKDGKSRHLAFIGFRTNE---EAAEA 288 R + N+P + L+++ K GEVT +++ +GKSR A + F+ E +AAE Sbjct: 70 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 129 Query: 289 LN 294 LN Sbjct: 130 LN 131
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 50.4 bits (119), Expect = 2e-06 Identities = 33/85 (38%), Positives = 46/85 (54%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 294 S L + NL A E+ L+EVF + T KV + ++GKS+ AFI F + E+A EALN Sbjct: 485 SKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALN 541 Query: 295 YFNNTYIDTSKITCEIARKIGDPDA 369 N I+ I E+ G P+A Sbjct: 542 SCNKREIEGRAIRLELQGPRGSPNA 566 Score = 41.6 bits (96), Expect = 7e-04 Identities = 24/70 (34%), Positives = 36/70 (51%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 303 L KNLP + L+EVF E+ + +KDGKS+ +A+I F+T +A + Sbjct: 395 LLAKNLPYKVTQDELKEVFEDAAEIR----LVSKDGKSKGIAYIEFKTEADAEKTFEEKQ 450 Query: 304 NTYIDTSKIT 333 T ID I+ Sbjct: 451 GTEIDGRSIS 460
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 50.4 bits (119), Expect = 2e-06 Identities = 28/76 (36%), Positives = 43/76 (56%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 303 L VKNL G D+ RLR+ F G +T AKV+ T+ G S+ F+ F + EEA +A+ N Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMN 354 Query: 304 NTYIDTSKITCEIARK 351 + T + +A++ Sbjct: 355 GRIVSTKPLYVALAQR 370 Score = 49.7 bits (117), Expect = 3e-06 Identities = 25/74 (33%), Positives = 40/74 (54%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KN + D+KRLRE+FS G KV+ G+SR F+ + +EEA +A++ N Sbjct: 195 IKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGK 254 Query: 310 YIDTSKITCEIARK 351 ++ I A+K Sbjct: 255 EVNGRMIYVGRAQK 268 Score = 41.2 bits (95), Expect = 0.001 Identities = 22/67 (32%), Positives = 34/67 (50%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KNL + D K L + FS G + KV+ + G SR F+ F T+E A A+ N Sbjct: 103 IKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGM 161 Query: 310 YIDTSKI 330 ++ K+ Sbjct: 162 LLNDRKV 168
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 50.4 bits (119), Expect = 2e-06 Identities = 33/85 (38%), Positives = 46/85 (54%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 294 S L + NL A E+ L+EVF + T KV + ++GKS+ AFI F + E+A EALN Sbjct: 484 SKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALN 540 Query: 295 YFNNTYIDTSKITCEIARKIGDPDA 369 N I+ I E+ G P+A Sbjct: 541 SCNKREIEGRAIRLELQGPRGSPNA 565 Score = 41.6 bits (96), Expect = 7e-04 Identities = 24/70 (34%), Positives = 36/70 (51%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 303 L KNLP + L+EVF E+ + +KDGKS+ +A+I F+T +A + Sbjct: 394 LLAKNLPYKVTQDELKEVFEDAAEIR----LVSKDGKSKGIAYIEFKTEADAEKTFEEKQ 449 Query: 304 NTYIDTSKIT 333 T ID I+ Sbjct: 450 GTEIDGRSIS 459
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 50.4 bits (119), Expect = 2e-06 Identities = 27/76 (35%), Positives = 45/76 (59%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 303 L VKNL G D++RLR+ F+ G +T AKV+ + G+S+ F+ F + EEA +A+ N Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVM-MEGGRSKGFGFVCFSSPEEATKAVTEMN 354 Query: 304 NTYIDTSKITCEIARK 351 + T + +A++ Sbjct: 355 GRIVATKPLYVALAQR 370 Score = 44.3 bits (103), Expect = 1e-04 Identities = 23/74 (31%), Positives = 39/74 (52%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KN + D++RL+E F + G KV+ GKSR F+ F +E+A +A++ N Sbjct: 195 IKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGK 254 Query: 310 YIDTSKITCEIARK 351 ++ I A+K Sbjct: 255 DLNGKAIFVGRAQK 268 Score = 42.7 bits (99), Expect = 3e-04 Identities = 22/67 (32%), Positives = 35/67 (52%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KNL K D K L + FS G + KV+ ++G S+ F+ F T E A A++ N Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGM 161 Query: 310 YIDTSKI 330 ++ K+ Sbjct: 162 LLNDRKV 168
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 50.4 bits (119), Expect = 2e-06 Identities = 33/85 (38%), Positives = 46/85 (54%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 294 S L + NL A E+ L+EVF + T KV + ++GKS+ AFI F + E+A EALN Sbjct: 486 SKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALN 542 Query: 295 YFNNTYIDTSKITCEIARKIGDPDA 369 N I+ I E+ G P+A Sbjct: 543 SCNKREIEGRAIRLELQGPRGSPNA 567 Score = 41.6 bits (96), Expect = 7e-04 Identities = 24/70 (34%), Positives = 36/70 (51%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 303 L KNLP + L+EVF E+ + +KDGKS+ +A+I F+T +A + Sbjct: 396 LLAKNLPYKVTQDELKEVFEDAAEIR----LVSKDGKSKGIAYIEFKTEADAEKTFEEKQ 451 Query: 304 NTYIDTSKIT 333 T ID I+ Sbjct: 452 GTEIDGRSIS 461
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 50.1 bits (118), Expect = 2e-06 Identities = 28/74 (37%), Positives = 40/74 (54%) Frame = +1 Query: 94 NLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNE 273 NL A + S + V NL K+L+EVFS G V A + KDGKSR + + F Sbjct: 216 NLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAI 275 Query: 274 EAAEALNYFNNTYI 315 EA +A++ FN ++ Sbjct: 276 EAVQAISMFNGQFL 289 Score = 32.7 bits (73), Expect = 0.34 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRK-GEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 294 +R+ + N+P + ++++ K GEVT ++ + +GKSR + F+ E +AL Sbjct: 91 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 150 Query: 295 YFN 303 N Sbjct: 151 TMN 153
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 50.1 bits (118), Expect = 2e-06 Identities = 28/74 (37%), Positives = 40/74 (54%) Frame = +1 Query: 94 NLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNE 273 NL A + S + V NL K+L+EVFS G V A + KDGKSR + + F Sbjct: 225 NLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAI 284 Query: 274 EAAEALNYFNNTYI 315 EA +A++ FN ++ Sbjct: 285 EAVQAISMFNGQFL 298 Score = 32.7 bits (73), Expect = 0.34 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRK-GEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 294 +R+ + N+P + ++++ K GEVT ++ + +GKSR + F+ E +AL Sbjct: 100 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 159 Query: 295 YFN 303 N Sbjct: 160 TMN 162
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 50.1 bits (118), Expect = 2e-06 Identities = 33/85 (38%), Positives = 45/85 (52%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 294 S L + NL A E+ L+EVF + T KV + + GKS+ AFI F + E+A EALN Sbjct: 484 SKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQQGKSKGYAFIEFASFEDAKEALN 540 Query: 295 YFNNTYIDTSKITCEIARKIGDPDA 369 N I+ I E+ G P+A Sbjct: 541 SCNKMEIEGRTIRLELQGPRGSPNA 565
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 50.1 bits (118), Expect = 2e-06 Identities = 27/69 (39%), Positives = 39/69 (56%) Frame = +1 Query: 97 LAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEE 276 L A + S + V NL K+L+EVFS G V A ++ KDGKSR + + F + E Sbjct: 196 LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIE 255 Query: 277 AAEALNYFN 303 A +A++ FN Sbjct: 256 AVQAISMFN 264 Score = 33.5 bits (75), Expect = 0.20 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRK-GEVTDAKVIRTKDGKSRHLAFIGFRTNE---EAAEA 288 R + N+P + L+++ K GEVT +++ +GKSR A + F+ E +AAE Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 130 Query: 289 LN 294 LN Sbjct: 131 LN 132
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 49.3 bits (116), Expect = 3e-06 Identities = 29/93 (31%), Positives = 47/93 (50%) Frame = +1 Query: 82 QQHGNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGF 261 ++H A S + VKN+ E+ LR+ FS+ G +T K++ + GKS+ F+ F Sbjct: 292 EKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCF 351 Query: 262 RTNEEAAEALNYFNNTYIDTSKITCEIARKIGD 360 T EEA +A+ F+ + IA+K D Sbjct: 352 STPEEAIDAVKTFHGQMFHGKPLYVAIAQKKED 384 Score = 46.2 bits (108), Expect = 3e-05 Identities = 22/67 (32%), Positives = 35/67 (52%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 VKNLP+ L+++F + G + KV +DGKSR F+ F + A A+ N+T Sbjct: 116 VKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNST 175 Query: 310 YIDTSKI 330 + +I Sbjct: 176 IVADKEI 182 Score = 35.4 bits (80), Expect = 0.052 Identities = 19/64 (29%), Positives = 30/64 (46%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 297 + L +KNL E LRE F+ G++ + + ++ R AF+ F E+A A Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAET 260 Query: 298 FNNT 309 N T Sbjct: 261 VNGT 264
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 49.3 bits (116), Expect = 3e-06 Identities = 25/78 (32%), Positives = 40/78 (51%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 297 S L +KNL ++++L+E+FS G VT KV+ G SR F+ + EEA A+ Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKE 387 Query: 298 FNNTYIDTSKITCEIARK 351 N I + +A++ Sbjct: 388 MNGKMIGRKPLYVALAQR 405 Score = 46.2 bits (108), Expect = 3e-05 Identities = 24/77 (31%), Positives = 40/77 (51%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 VKNLPK + L++ F + G+++ A V++ + G SR F+ F + E AA A+ N Sbjct: 229 VKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGI 288 Query: 310 YIDTSKITCEIARKIGD 360 + + A+K D Sbjct: 289 SLGEDVLYVGRAQKKSD 305 Score = 39.3 bits (90), Expect = 0.004 Identities = 20/67 (29%), Positives = 31/67 (46%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KNL D K L E FS G + KV G+S+ F+ F E A A++ N Sbjct: 136 IKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGM 195 Query: 310 YIDTSKI 330 ++ ++ Sbjct: 196 LLNDKQV 202
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 48.9 bits (115), Expect = 5e-06 Identities = 26/67 (38%), Positives = 38/67 (56%) Frame = +1 Query: 103 ADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAA 282 A + S + V NL K+L+EVFS G V A ++ KDGKSR + + F + EA Sbjct: 158 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAV 217 Query: 283 EALNYFN 303 +A++ FN Sbjct: 218 QAISMFN 224 Score = 33.5 bits (75), Expect = 0.20 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRK-GEVTDAKVIRTKDGKSRHLAFIGFRTNE---EAAEA 288 R + N+P + L+++ K GEVT +++ +GKSR A + F+ E +AAE Sbjct: 70 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 129 Query: 289 LN 294 LN Sbjct: 130 LN 131
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 48.9 bits (115), Expect = 5e-06 Identities = 33/85 (38%), Positives = 44/85 (51%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 294 S L + NL A E+ L+EVF + T KV + GKS+ AFI F + E+A EALN Sbjct: 487 SKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNPHGKSKGYAFIEFASFEDAKEALN 543 Query: 295 YFNNTYIDTSKITCEIARKIGDPDA 369 N I+ I E+ G P+A Sbjct: 544 SCNKMEIEGRTIRLELQGPRGSPNA 568
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 48.9 bits (115), Expect = 5e-06 Identities = 27/76 (35%), Positives = 44/76 (57%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 303 L VKNL G D++RLR+ F G +T AKV+ + G+S+ F+ F + EEA +A+ N Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVM-MEGGRSKGFGFVCFSSPEEATKAVTEMN 354 Query: 304 NTYIDTSKITCEIARK 351 + T + +A++ Sbjct: 355 GRIVATKPLYVALAQR 370 Score = 42.7 bits (99), Expect = 3e-04 Identities = 18/58 (31%), Positives = 34/58 (58%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 303 +KN +++RL+E+F + G KV+ +GKS+ F+ F +E+A +A++ N Sbjct: 195 IKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252 Score = 42.7 bits (99), Expect = 3e-04 Identities = 22/67 (32%), Positives = 35/67 (52%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KNL K D K L + FS G + KV+ ++G S+ F+ F T E A A++ N Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGM 161 Query: 310 YIDTSKI 330 ++ K+ Sbjct: 162 LLNDRKV 168
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 48.5 bits (114), Expect = 6e-06 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Frame = +1 Query: 91 GNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRT 267 G+ + +RL V NL G D+ L +F+ +G+V +A+VI +D G+S+ F+ + Sbjct: 248 GSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSS 307 Query: 268 NEEAAEALNYFNNTYIDTSKI 330 ++E +A+N N +D +I Sbjct: 308 SQEVQKAINSLNGADLDGRQI 328
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 48.5 bits (114), Expect = 6e-06 Identities = 24/76 (31%), Positives = 42/76 (55%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 303 L +KNL D++RL+ FS G +T AK++ + GKS+ F+ + T EEA +A+ N Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425 Query: 304 NTYIDTSKITCEIARK 351 + + +A++ Sbjct: 426 QRMLAGKPLYVALAQR 441 Score = 38.1 bits (87), Expect = 0.008 Identities = 20/84 (23%), Positives = 42/84 (50%) Frame = +1 Query: 100 AADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEA 279 A A + + +KNL E+ ++F + GE+T +++ ++ K R F+ + +E A Sbjct: 255 ALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECA 314 Query: 280 AEALNYFNNTYIDTSKITCEIARK 351 +A++ N+ K+ A+K Sbjct: 315 QKAVDELNDKEYKGKKLYVGRAQK 338
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 48.5 bits (114), Expect = 6e-06 Identities = 25/76 (32%), Positives = 45/76 (59%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 303 L +KNL D+++LR+ FS G +T AKV+ +DG+S+ F+ F + EEA +A+ N Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM-LEDGRSKGFGFVCFSSPEEATKAVTEMN 354 Query: 304 NTYIDTSKITCEIARK 351 + + + +A++ Sbjct: 355 GRIVGSKPLYVALAQR 370 Score = 46.2 bits (108), Expect = 3e-05 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Frame = +1 Query: 82 QQHGNLAADAMS-SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIG 258 ++ L A A + + +KN + D++ L+E+FS+ G+ KV+R +GKS+ F+ Sbjct: 178 EREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVS 237 Query: 259 FRTNEEAAEALNYFNNTYIDTSKITCEIARK 351 + +E+A +A+ N I I A+K Sbjct: 238 YEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268 Score = 43.9 bits (102), Expect = 1e-04 Identities = 23/67 (34%), Positives = 36/67 (53%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KNL K D K L + FS G + KV+ ++G S+ AF+ F T E A +A+ N Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161 Query: 310 YIDTSKI 330 ++ K+ Sbjct: 162 LLNDRKV 168
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 48.1 bits (113), Expect = 8e-06 Identities = 29/77 (37%), Positives = 41/77 (53%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 294 S L V NL A E+ L+E+F + T K+ + G+ + AF+ F T E+A EALN Sbjct: 460 SKTLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALN 516 Query: 295 YFNNTYIDTSKITCEIA 345 NNT I+ I E + Sbjct: 517 SCNNTEIEGRAIRLEFS 533 Score = 42.7 bits (99), Expect = 3e-04 Identities = 24/65 (36%), Positives = 36/65 (55%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 303 L VKNLP E ++ VF EV +++ K+G S+ +A+I F+T EA +AL Sbjct: 373 LFVKNLPYRVTEDEMKNVFENALEV---RLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQ 429 Query: 304 NTYID 318 T +D Sbjct: 430 GTEVD 434
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 48.1 bits (113), Expect = 8e-06 Identities = 22/58 (37%), Positives = 34/58 (58%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 303 VKN + D+++L+E F G++T KV+ +DGKS+ F+ F T E A A+ N Sbjct: 187 VKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244 Score = 47.8 bits (112), Expect = 1e-05 Identities = 25/76 (32%), Positives = 40/76 (52%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 303 L VKNL D+ RLR FS G +T AKV+ ++G+S+ F+ F EA A+ N Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELN 348 Query: 304 NTYIDTSKITCEIARK 351 + + + +A++ Sbjct: 349 GRVVGSKPLYVALAQR 364
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 47.4 bits (111), Expect = 1e-05 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 3/83 (3%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALN 294 + L V NLP+ + L ++F + G + ++R K GK R +AF+ F EEA EA++ Sbjct: 171 TNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAIS 230 Query: 295 YFNNTYID--TSKITCEIARKIG 357 NN + + +T +A + G Sbjct: 231 ALNNVIPEGASQPLTVRLAEEHG 253
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 46.2 bits (108), Expect = 3e-05 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 3/83 (3%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALN 294 + L V NLP+ + L ++F + G + ++R K G+ R +AF+ F EEA EA++ Sbjct: 188 TNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAIS 247 Query: 295 YFNNTYID--TSKITCEIARKIG 357 NN + + +T +A + G Sbjct: 248 ALNNVIPEGASQPLTVRLAEEHG 270
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 46.2 bits (108), Expect = 3e-05 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 3/83 (3%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALN 294 + L V NL + +++L +F + G++ ++R K G R +AFI F EEA EA++ Sbjct: 164 TNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAIS 223 Query: 295 YFNNTYID--TSKITCEIARKIG 357 NN + T +T +A + G Sbjct: 224 ALNNVIPEGGTQPLTVRVAEEHG 246
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 46.2 bits (108), Expect = 3e-05 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 3/96 (3%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALN 294 + L V NLP+ + +L +F + G + ++R K GK R +AF+ F EEA EA++ Sbjct: 196 TNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAIS 255 Query: 295 YFNNTYID--TSKITCEIARKIGDPDAPRPWSRHSL 396 NN + + +T +A + G A S+ L Sbjct: 256 ALNNVIPEGASQPLTVRLAEEHGKAKAQHYMSQLGL 291
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 45.8 bits (107), Expect = 4e-05 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEAL 291 S+R+ V NL G D+ L +FS +G+V DAKV+ +D G+SR F+ + + EE A+ Sbjct: 193 SNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAI 252 Score = 38.1 bits (87), Expect = 0.008 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNY 297 ++ V NL AD L E+F R G V +VI K G+SR F+ + EE A Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147 Query: 298 FNNTYID 318 FN +D Sbjct: 148 FNGYELD 154
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 45.8 bits (107), Expect = 4e-05 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEAL 291 S+R+ V NL G D+ L +FS +G+V DAKV+ +D G+SR F+ + + EE A+ Sbjct: 187 SNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAI 246 Score = 42.0 bits (97), Expect = 6e-04 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNY 297 ++ V NLP AD L E+F R G V +VI K G+SR F+ + EE A Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147 Query: 298 FNNTYID 318 FN +D Sbjct: 148 FNGYELD 154
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 45.8 bits (107), Expect = 4e-05 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Frame = +1 Query: 112 MSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEA 288 MS++L + L G D+ LR+ F+ G+V DAKVI ++ G+SR F+ F A A Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92 Query: 289 LNYFNNTYIDTSKITCEIARKIGDPDAPRPW 381 ++ + ++ I A P APR + Sbjct: 93 ISEMDGKELNGRHIRVNPAN--DRPSAPRAY 121
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 45.4 bits (106), Expect = 5e-05 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 2/88 (2%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALN 294 ++L V NLP D ++L +F G V A+VI ++ +SR F+ T EEA +A+ Sbjct: 55 AKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 114 Query: 295 YFNNTYIDTSKITCEIARKIGDPD-APR 375 N +D ++T A G P+ APR Sbjct: 115 LLNGYDMDGRQLTVNKAAPRGSPERAPR 142
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 45.4 bits (106), Expect = 5e-05 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNY 297 ++ + NL K + L++ FS KG+V AKV RT KS F+ F + EE A+ Sbjct: 185 KVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQA 244 Query: 298 FNNTYIDTSKI 330 NN+ ++ KI Sbjct: 245 LNNSVLEGQKI 255 Score = 43.1 bits (100), Expect = 3e-04 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNY 297 RL V N+P+ + LR + G + A+V+ K G+SR F+ +T E+A + Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEK 144 Query: 298 FNNTYIDTSKITCEIARK 351 N+T I KI I K Sbjct: 145 LNDTEIGGRKIKVNITEK 162
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 45.1 bits (105), Expect = 7e-05 Identities = 23/70 (32%), Positives = 38/70 (54%) Frame = +1 Query: 109 AMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEA 288 A + + VKN+ D+++L+E+F G KVIR GKS+ F+ + T+E A +A Sbjct: 196 ATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 255 Query: 289 LNYFNNTYID 318 + + ID Sbjct: 256 VLDLHGKSID 265 Score = 35.0 bits (79), Expect = 0.068 Identities = 18/67 (26%), Positives = 39/67 (58%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KNL + ++++L+E FS G ++ AKV+ + G+ + + F + EEA +A++ N Sbjct: 306 IKNLDETINDEKLKEEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGR 364 Query: 310 YIDTSKI 330 + + + Sbjct: 365 IVGSKPL 371 Score = 32.0 bits (71), Expect = 0.58 Identities = 18/67 (26%), Positives = 33/67 (49%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KNL K D + L +FS G + KV+ D S+ A++ F + A A+ + N Sbjct: 110 IKNLDKSIDNRALFYLFSAFGNILSCKVV-CDDNGSKGYAYVHFDSLAAANRAIWHMNGV 168 Query: 310 YIDTSKI 330 ++ ++ Sbjct: 169 RLNNRQV 175
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 45.1 bits (105), Expect = 7e-05 Identities = 23/70 (32%), Positives = 38/70 (54%) Frame = +1 Query: 109 AMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEA 288 A + + VKN+ D+++L+E+F G KVIR GKS+ F+ + T+E A +A Sbjct: 196 ATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 255 Query: 289 LNYFNNTYID 318 + + ID Sbjct: 256 VLDLHGKSID 265 Score = 35.0 bits (79), Expect = 0.068 Identities = 18/67 (26%), Positives = 39/67 (58%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KNL + ++++L+E FS G ++ AKV+ + G+ + + F + EEA +A++ N Sbjct: 306 IKNLDETINDEKLKEEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGR 364 Query: 310 YIDTSKI 330 + + + Sbjct: 365 IVGSKPL 371 Score = 32.0 bits (71), Expect = 0.58 Identities = 18/67 (26%), Positives = 33/67 (49%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KNL K D + L +FS G + KV+ D S+ A++ F + A A+ + N Sbjct: 110 IKNLDKSIDNRALFYLFSAFGNILSCKVV-CDDNGSKGYAYVHFDSLAAANRAIWHMNGV 168 Query: 310 YIDTSKI 330 ++ ++ Sbjct: 169 RLNNRQV 175
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 45.1 bits (105), Expect = 7e-05 Identities = 23/70 (32%), Positives = 38/70 (54%) Frame = +1 Query: 109 AMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEA 288 A + + VKN+ D+++L+E+F G KVIR GKS+ F+ + T+E A +A Sbjct: 196 ATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 255 Query: 289 LNYFNNTYID 318 + + ID Sbjct: 256 VLDLHGKSID 265 Score = 35.0 bits (79), Expect = 0.068 Identities = 18/67 (26%), Positives = 39/67 (58%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KNL + ++++L+E FS G ++ AKV+ + G+ + + F + EEA +A++ N Sbjct: 306 IKNLDETINDEKLKEEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGR 364 Query: 310 YIDTSKI 330 + + + Sbjct: 365 VVGSKPL 371 Score = 32.0 bits (71), Expect = 0.58 Identities = 18/67 (26%), Positives = 33/67 (49%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KNL K D + L +FS G + KV+ D S+ A++ F + A A+ + N Sbjct: 110 IKNLDKSIDNRALFYLFSAFGNILSCKVV-CDDNGSKGYAYVHFDSLAAANRAIWHMNGV 168 Query: 310 YIDTSKI 330 ++ ++ Sbjct: 169 RLNNRQV 175
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 45.1 bits (105), Expect = 7e-05 Identities = 23/70 (32%), Positives = 38/70 (54%) Frame = +1 Query: 109 AMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEA 288 A + + VKN+ D+++L+E+F G KVIR GKS+ F+ + T+E A +A Sbjct: 196 ATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 255 Query: 289 LNYFNNTYID 318 + + ID Sbjct: 256 VLDLHGKSID 265 Score = 35.0 bits (79), Expect = 0.068 Identities = 18/67 (26%), Positives = 39/67 (58%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KNL + ++++L+E FS G ++ AKV+ + G+ + + F + EEA +A++ N Sbjct: 306 IKNLDETINDEKLKEEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGR 364 Query: 310 YIDTSKI 330 + + + Sbjct: 365 IVGSKPL 371 Score = 32.0 bits (71), Expect = 0.58 Identities = 18/67 (26%), Positives = 33/67 (49%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KNL K D + L +FS G + KV+ D S+ A++ F + A A+ + N Sbjct: 110 IKNLDKSIDNRALFYLFSAFGNILSCKVV-CDDNGSKGYAYVHFDSLAAANRAIWHMNGV 168 Query: 310 YIDTSKI 330 ++ ++ Sbjct: 169 RLNNRQV 175
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 45.1 bits (105), Expect = 7e-05 Identities = 23/70 (32%), Positives = 38/70 (54%) Frame = +1 Query: 109 AMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEA 288 A + + VKN+ D+++L+E+F G KVIR GKS+ F+ + T+E A +A Sbjct: 196 ATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 255 Query: 289 LNYFNNTYID 318 + + ID Sbjct: 256 VLDLHGKSID 265 Score = 35.0 bits (79), Expect = 0.068 Identities = 18/67 (26%), Positives = 39/67 (58%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KNL + ++++L+E FS G ++ AKV+ + G+ + + F + EEA +A++ N Sbjct: 306 IKNLDETINDEKLKEEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGR 364 Query: 310 YIDTSKI 330 + + + Sbjct: 365 IVGSKPL 371 Score = 32.0 bits (71), Expect = 0.58 Identities = 18/67 (26%), Positives = 33/67 (49%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KNL K D + L +FS G + KV+ D S+ A++ F + A A+ + N Sbjct: 110 IKNLDKSIDNRALFYLFSAFGNILSCKVV-CDDNGSKGYAYVHFDSLAAANRAIWHMNGV 168 Query: 310 YIDTSKI 330 ++ ++ Sbjct: 169 RLNNRQV 175
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 45.1 bits (105), Expect = 7e-05 Identities = 23/70 (32%), Positives = 38/70 (54%) Frame = +1 Query: 109 AMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEA 288 A + + VKN+ D+++L+E+F G KVIR GKS+ F+ + T+E A +A Sbjct: 196 ATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 255 Query: 289 LNYFNNTYID 318 + + ID Sbjct: 256 VLDLHGKSID 265 Score = 35.0 bits (79), Expect = 0.068 Identities = 18/67 (26%), Positives = 39/67 (58%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KNL + ++++L+E FS G ++ AKV+ + G+ + + F + EEA +A++ N Sbjct: 306 IKNLDETINDEKLKEEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGR 364 Query: 310 YIDTSKI 330 + + + Sbjct: 365 IVGSKPL 371 Score = 32.0 bits (71), Expect = 0.58 Identities = 18/67 (26%), Positives = 33/67 (49%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 +KNL K D + L +FS G + KV+ D S+ A++ F + A A+ + N Sbjct: 110 IKNLDKSIDNRALFYLFSAFGNILSCKVV-CDDNGSKGYAYVHFDSLAAANRAIWHMNGV 168 Query: 310 YIDTSKI 330 ++ ++ Sbjct: 169 RLNNRQV 175
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 45.1 bits (105), Expect = 7e-05 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Frame = +1 Query: 97 LAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNE 273 +A+ + R V L DE+ L FS+ GE+ D+K+I ++ G+SR F+ F+ + Sbjct: 1 MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEK 60 Query: 274 EAAEALNYFNNTYIDTSKITCEIARKIG 357 +A+ N +D IT A+ G Sbjct: 61 SMKDAIEGMNGQDLDGRSITVNEAQSRG 88
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 45.1 bits (105), Expect = 7e-05 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Frame = +1 Query: 97 LAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNE 273 +A+ + R V L D++ L FS+ GEV D+K+I ++ G+SR F+ F+ + Sbjct: 1 MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEK 60 Query: 274 EAAEALNYFNNTYIDTSKITCEIARKIG 357 +A+ N +D IT A+ G Sbjct: 61 SMKDAIEGMNGQDLDGRSITVNEAQSRG 88
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 44.7 bits (104), Expect = 9e-05 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Frame = +1 Query: 106 DAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAA 282 D + L V LP+ + LR +FS GEV AK+IR K G S F+ + T ++A Sbjct: 16 DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75 Query: 283 EALNYFNNTYIDTSKITCEIAR 348 A+N N + + I AR Sbjct: 76 RAINTLNGLRLQSKTIKVSYAR 97 Score = 40.8 bits (94), Expect = 0.001 Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALN 294 + L + LP+ +K + ++FSR G + +++V+ + G SR +AFI F EA EA+ Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165 Query: 295 YFN 303 FN Sbjct: 166 SFN 168 Score = 33.5 bits (75), Expect = 0.20 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRT-KDGKSRHLAFIGFRTNEEAAEALNYFN 303 + NL + ADE L ++F G VT+ KVIR K + F+ EEAA A+ N Sbjct: 248 IYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLN 306
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 44.3 bits (103), Expect = 1e-04 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 1/105 (0%) Frame = +1 Query: 82 QQHGNLAADAMSSR-LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIG 258 Q GN S+ L V NL A E LREVF + + I G+++ AFI Sbjct: 401 QNSGNKKGPEGDSKVLVVNNLSYSATEDSLREVFEKATSIR----IPQNQGRAKGFAFIE 456 Query: 259 FRTNEEAAEALNYFNNTYIDTSKITCEIARKIGDPDAPRPWSRHS 393 F + E+A +A++ NNT I+ I E ++ G R S S Sbjct: 457 FSSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQS 501 Score = 37.0 bits (84), Expect = 0.018 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 4/90 (4%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 294 S L VKN+P + L+E+F D ++ KDG ++ +A++ F +EA +AL Sbjct: 323 SRTLFVKNIPYSTTVEELQEIFE---NAKDIRIPTGKDGSNKGIAYVEFSNEDEANKALE 379 Query: 295 YFNNTYIDTSKI----TCEIARKIGDPDAP 372 I+ I T E ++ G+ P Sbjct: 380 EKQGAEIEGRSIFVDFTGEKSQNSGNKKGP 409
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 43.9 bits (102), Expect = 1e-04 Identities = 20/68 (29%), Positives = 33/68 (48%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 297 + L + NLP DE+ L + G+V +V+R G SR + F + E+ + + Sbjct: 141 TNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEKCEAVIGH 200 Query: 298 FNNTYIDT 321 FN +I T Sbjct: 201 FNGKFIKT 208
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 43.5 bits (101), Expect = 2e-04 Identities = 20/68 (29%), Positives = 33/68 (48%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 297 + L + NLP DE+ L + G+V +++R G SR + F + E+ + + Sbjct: 135 TNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITH 194 Query: 298 FNNTYIDT 321 FN YI T Sbjct: 195 FNGKYIKT 202
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 43.5 bits (101), Expect = 2e-04 Identities = 20/68 (29%), Positives = 33/68 (48%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 297 + L + NLP DE+ L + G+V +++R G SR + F + E+ + + Sbjct: 137 TNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGASRGVGFARMESTEKCEAIITH 196 Query: 298 FNNTYIDT 321 FN YI T Sbjct: 197 FNGKYIKT 204
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 43.5 bits (101), Expect = 2e-04 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Frame = +1 Query: 106 DAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAA 282 D + L V LP+ ++ LR +FS GEV AK+IR K G S F+ + T ++A Sbjct: 16 DIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75 Query: 283 EALNYFNNTYIDTSKITCEIAR 348 A++ N + + I AR Sbjct: 76 RAISTLNGLRLQSKTIKVSYAR 97 Score = 38.5 bits (88), Expect = 0.006 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKV-IRTKDGKSRHLAFIGFRTNEEAAEALN 294 + L + LP+ +K + ++FSR G + +++V + G SR +AFI F EA EA+ Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165 Query: 295 YF 300 F Sbjct: 166 SF 167 Score = 32.3 bits (72), Expect = 0.44 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRT-KDGKSRHLAFIGFRTNEEAAEALNYFN 303 + NL + ADE L ++F G VT+ KVIR K + F+ EE+A A+ N Sbjct: 248 IYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASLN 306
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 43.5 bits (101), Expect = 2e-04 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALNY 297 R+ V N+P D+ RL +VFS G+V A+V+ ++ G+SR F+ + E +EA+ Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251 Query: 298 FNNTYIDTSKITCEIARK 351 + +D I A + Sbjct: 252 LDGQTLDGRTIRVNAAEE 269
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 43.5 bits (101), Expect = 2e-04 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALNY 297 R V L +++ L + FS+ G++TD+K+I ++ G+SR F+ F+ + +A+ Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66 Query: 298 FNNTYIDTSKITCEIARKIG 357 N +D IT A+ G Sbjct: 67 MNGQELDGRNITVNEAQSRG 86
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 43.5 bits (101), Expect = 2e-04 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALN 294 + L V NLP+ + +L +F + G + ++R K G+ R +AF+ + EEA EA++ Sbjct: 213 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 272 Query: 295 YFNN 306 NN Sbjct: 273 ALNN 276
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 43.5 bits (101), Expect = 2e-04 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALN 294 + L V NLP+ + +L +F + G + ++R K G+ R +AF+ + EEA EA++ Sbjct: 211 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 270 Query: 295 YFNN 306 NN Sbjct: 271 ALNN 274
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 43.5 bits (101), Expect = 2e-04 Identities = 19/68 (27%), Positives = 33/68 (48%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 297 + L + NLP DE+ L + G+V +++R G SR + F + E+ + + Sbjct: 141 TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGH 200 Query: 298 FNNTYIDT 321 FN +I T Sbjct: 201 FNGKFIKT 208
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 43.1 bits (100), Expect = 3e-04 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Frame = +1 Query: 100 AADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEE 276 A D + L V LP+ ++ R +F GE+ K++R K G+S F+ + ++ Sbjct: 45 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 104 Query: 277 AAEALNYFNNTYIDTSKITCEIAR 348 A +A+N N + T I AR Sbjct: 105 AEKAINTLNGLRLQTKTIKVSYAR 128 Score = 30.0 bits (66), Expect = 2.2 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRT-KDGKSRHLAFIGFRTNEEAAEALNYFN 303 V NL +DE L ++F G V + KVIR K + F+ +EAA A+ N Sbjct: 306 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 364
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 43.1 bits (100), Expect = 3e-04 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Frame = +1 Query: 100 AADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEE 276 A D + L V LP+ ++ R +F GE+ K++R K G+S F+ + ++ Sbjct: 33 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92 Query: 277 AAEALNYFNNTYIDTSKITCEIAR 348 A +A+N N + T I AR Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYAR 116 Score = 30.0 bits (66), Expect = 2.2 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRT-KDGKSRHLAFIGFRTNEEAAEALNYFN 303 V NL +DE L ++F G V + KVIR K + F+ +EAA A+ N Sbjct: 294 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 352
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 43.1 bits (100), Expect = 3e-04 Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 6/73 (8%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTD----AKVIRTKDG--KSRHLAFIGFRTNEE 276 S+++ VKNLP A +K +RE+FS G++ K + T G +R AF+ F T+ E Sbjct: 639 STKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHTE 698 Query: 277 AAEALNYFNNTYI 315 AA A+ +T++ Sbjct: 699 AARAMEALKHTHL 711 Score = 37.7 bits (86), Expect = 0.011 Identities = 20/69 (28%), Positives = 30/69 (43%) Frame = +1 Query: 106 DAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAE 285 D SRL NLP + R+ + + TK R AF+G++ EEA + Sbjct: 20 DKRQSRLIFLNLPSTLNPDTFRKTLLSPATLKSTTITDTKLVPKRRFAFVGYKDAEEAQK 79 Query: 286 ALNYFNNTY 312 +F+ TY Sbjct: 80 VKEWFDGTY 88 Score = 29.6 bits (65), Expect = 2.9 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 6/93 (6%) Frame = +1 Query: 106 DAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK------SRHLAFIGFRT 267 D S L +K L L+ V S + A+V D K S F+GF+T Sbjct: 531 DEAGSTLFLKGLNFTTTTPHLQTVLSHIPGFSFARVQMKPDPKRPGEKLSMGYGFVGFKT 590 Query: 268 NEEAAEALNYFNNTYIDTSKITCEIARKIGDPD 366 E A +AL ID + + A++ + D Sbjct: 591 KEAATKALKALEGFEIDGKSLEVKFAQRGAEDD 623
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 42.4 bits (98), Expect = 4e-04 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNY 297 RL V NLP +L E+F+ G V + +++ + +SR AF+ + EEA EA+ Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174 Query: 298 FNNTYIDTSKITCEIARKIGDPDAPRPWSR 387 F+ + + + K+ P+ PR R Sbjct: 175 FDGSQVGGRTV------KVNFPEVPRGGER 198
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 42.4 bits (98), Expect = 4e-04 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Frame = +1 Query: 97 LAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNE 273 +A+ + R V L D++ L F++ G+V D+K+I ++ G+SR F+ F+ + Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60 Query: 274 EAAEALNYFNNTYIDTSKITCEIARKIG 357 +A+ N +D IT A+ G Sbjct: 61 AMKDAIEGMNGQDLDGRSITVNEAQSRG 88
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 42.4 bits (98), Expect = 4e-04 Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 13/76 (17%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVF--SRKGE----VTDAKVIR-------TKDGKSRHLAFIG 258 +RLC+ N PK D+K+LR++ + +GE + + +V+R G+S AF Sbjct: 476 TRLCLHNFPKAVDDKQLRKLLLEATRGEKGVRIKECRVMRDLKGVHGKMKGQSLGYAFAE 535 Query: 259 FRTNEEAAEALNYFNN 306 F+ +E A AL +FNN Sbjct: 536 FQKHEHALRALRHFNN 551 Score = 41.2 bits (95), Expect = 0.001 Identities = 22/62 (35%), Positives = 33/62 (53%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 297 +RL ++NL E L+ VF+ G V + + + DGK R AF+ F+ EA +AL Sbjct: 113 ARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKG 172 Query: 298 FN 303 N Sbjct: 173 AN 174
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 42.0 bits (97), Expect = 6e-04 Identities = 23/77 (29%), Positives = 38/77 (49%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYF 300 +L + L + +EK L+ VF + G +++ +I+ + KSR AFI F +A A Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDM 68 Query: 301 NNTYIDTSKITCEIARK 351 N + I E A+K Sbjct: 69 NGKSLHGKAIKVEQAKK 85
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 42.0 bits (97), Expect = 6e-04 Identities = 20/70 (28%), Positives = 37/70 (52%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYF 300 RL V NL +++ L + FS + KV+R ++GK+R F+ F+ +++ +A Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90 Query: 301 NNTYIDTSKI 330 N YI + + Sbjct: 91 NGKYIGSRPV 100
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 41.6 bits (96), Expect = 7e-04 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Frame = +1 Query: 106 DAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAA 282 D + L V LP+ ++ R +F GE+ K++R K G+S F+ + ++A Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101 Query: 283 EALNYFNNTYIDTSKITCEIAR 348 +A+N N + T I AR Sbjct: 102 KAINTLNGLRLQTKTIKVSYAR 123 Score = 30.0 bits (66), Expect = 2.2 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRT-KDGKSRHLAFIGFRTNEEAAEALNYFN 303 V NL +DE L ++F G V + KVIR K + F+ +EAA A+ N Sbjct: 301 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 359
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 41.6 bits (96), Expect = 7e-04 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 14/106 (13%) Frame = +1 Query: 85 QHGNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD------------ 228 Q+G+ + + L V LP+ E +R +FS GE+ K+IR K Sbjct: 174 QNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAP 233 Query: 229 --GKSRHLAFIGFRTNEEAAEALNYFNNTYIDTSKITCEIARKIGD 360 G+S F+ + ++A +A+N N + I AR D Sbjct: 234 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSD 279
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 41.6 bits (96), Expect = 7e-04 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 14/106 (13%) Frame = +1 Query: 85 QHGNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD------------ 228 Q+G+ + + L V LP+ E +R +FS GE+ K+IR K Sbjct: 138 QNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAP 197 Query: 229 --GKSRHLAFIGFRTNEEAAEALNYFNNTYIDTSKITCEIARKIGD 360 G+S F+ + ++A +A+N N + I AR D Sbjct: 198 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSD 243
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 41.6 bits (96), Expect = 7e-04 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Frame = +1 Query: 97 LAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNE 273 +AA + R V L + + L + F+ G+V D+KVI ++ G+SR F+ F + + Sbjct: 1 MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQ 60 Query: 274 EAAEALNYFNNTYIDTSKITCEIARKIG 357 +A+ N +D IT A+ G Sbjct: 61 SMLDAIENMNGKELDGRNITVNQAQSRG 88
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 41.6 bits (96), Expect = 7e-04 Identities = 22/62 (35%), Positives = 33/62 (53%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 297 +RL ++NL E L+ VF++ G V + + R DGK R F+ F+ EA +AL Sbjct: 113 ARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKG 172 Query: 298 FN 303 N Sbjct: 173 MN 174 Score = 40.4 bits (93), Expect = 0.002 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 13/76 (17%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVF-----SRKG-EVTDAKVIR-------TKDGKSRHLAFIG 258 +RLC+ NLPK D+K+LR++ KG + + +V+R G+S AF Sbjct: 486 TRLCLHNLPKAVDDKQLRKLLLSATSGEKGVRIKECRVMRDLKGVHGNMKGQSLGYAFAE 545 Query: 259 FRTNEEAAEALNYFNN 306 F+ +E A +AL NN Sbjct: 546 FQEHEHALKALRLINN 561 Score = 28.1 bits (61), Expect = 8.3 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK-SRHLAFIGFRTNEEAAEAL 291 ++NL ++E+ L E+ + GE+ +++ D + S+ AF F T E A + L Sbjct: 338 IRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCL 392
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 41.6 bits (96), Expect = 7e-04 Identities = 20/60 (33%), Positives = 33/60 (55%) Frame = +1 Query: 106 DAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAE 285 + + +R+ V P E LRE F + V D K++++ DG+S+ FI F T ++A E Sbjct: 63 ELIPNRIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEE 122
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 41.2 bits (95), Expect = 0.001 Identities = 25/71 (35%), Positives = 35/71 (49%) Frame = +1 Query: 91 GNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTN 270 G AA+A L V NL E+ L E+F + G V K+ + KDGK + AF+ F+ Sbjct: 2 GAAAAEA-DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHE 60 Query: 271 EEAAEALNYFN 303 A+N N Sbjct: 61 VSVPYAMNLLN 71
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 41.2 bits (95), Expect = 0.001 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALNY 297 R V L + L FS+ GEV D+K+I ++ G+SR F+ F+ + +A++ Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66 Query: 298 FNNTYIDTSKITCEIARKIG 357 N +D IT A+ G Sbjct: 67 MNGKELDGRTITVNEAQSRG 86
>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic| region Length = 220 Score = 41.2 bits (95), Expect = 0.001 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEAL 291 S + V LP G EK L + F++ G++ + ++ R K G SRH F+ F E+A A Sbjct: 90 SGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQ 149 Query: 292 NYFNN 306 NN Sbjct: 150 ESMNN 154
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 41.2 bits (95), Expect = 0.001 Identities = 25/71 (35%), Positives = 35/71 (49%) Frame = +1 Query: 91 GNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTN 270 G AA+A L V NL E+ L E+F + G V K+ + KDGK + AF+ F+ Sbjct: 2 GAAAAEA-DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHE 60 Query: 271 EEAAEALNYFN 303 A+N N Sbjct: 61 VSVPYAMNLLN 71
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 41.2 bits (95), Expect = 0.001 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 1/99 (1%) Frame = +1 Query: 121 RLCVKNLPKGA-DEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 297 +L ++N+P D +L+++F R G V +A + R +DGK AF+ + AL Sbjct: 148 KLIIRNMPWSCRDPVKLKKIFGRYGTVVEATIPRKRDGKLCGFAFVTMKKISNCRIALEN 207 Query: 298 FNNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKKPEYN 414 + ID K+ + A + W + +PE N Sbjct: 208 TKDLKIDGRKVAVDFAVQ------KNRWEDYKKAQPEMN 240
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 40.8 bits (94), Expect = 0.001 Identities = 25/71 (35%), Positives = 35/71 (49%) Frame = +1 Query: 91 GNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTN 270 G AA+A L V NL E+ L E+F + G V K+ + KDGK + AF+ F+ Sbjct: 2 GAAAAEA-DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHE 60 Query: 271 EEAAEALNYFN 303 A+N N Sbjct: 61 VSVPYAMNLLN 71
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 40.8 bits (94), Expect = 0.001 Identities = 28/76 (36%), Positives = 38/76 (50%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 294 S L + NL A ++ L EVF + T KV + GK + AFI F + E+A EALN Sbjct: 485 SKTLVLSNLSYSATKETLEEVFEK---ATFIKVPQNPHGKPKGYAFIEFASFEDAKEALN 541 Query: 295 YFNNTYIDTSKITCEI 342 N I+ I E+ Sbjct: 542 SCNKMEIEGRTIRLEL 557
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 40.8 bits (94), Expect = 0.001 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALN 294 + L V LP+ ++ L+ +F GE+ K++R K G+S F+ + ++A +A+N Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98 Query: 295 YFNNTYIDTSKITCEIAR 348 N + T I AR Sbjct: 99 TLNGLRLQTKTIKVSYAR 116 Score = 33.1 bits (74), Expect = 0.26 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRT-KDGKSRHLAFIGFRTNEEAAEALNYFN 303 V NL ADE L ++F G VT+ KVIR K + F+ +EAA A+ N Sbjct: 281 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 339
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 40.8 bits (94), Expect = 0.001 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALN 294 + L V LP+ ++ L+ +F GE+ K++R K G+S F+ + ++A +A+N Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98 Query: 295 YFNNTYIDTSKITCEIAR 348 N + T I AR Sbjct: 99 TLNGLRLQTKTIKVSYAR 116 Score = 33.1 bits (74), Expect = 0.26 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRT-KDGKSRHLAFIGFRTNEEAAEALNYFN 303 V NL ADE L ++F G VT+ KVIR K + F+ +EAA A+ N Sbjct: 280 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 338
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 40.8 bits (94), Expect = 0.001 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALN 294 + L V LP+ ++ L+ +F GE+ K++R K G+S F+ + ++A +A+N Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98 Query: 295 YFNNTYIDTSKITCEIAR 348 N + T I AR Sbjct: 99 TLNGLRLQTKTIKVSYAR 116 Score = 33.1 bits (74), Expect = 0.26 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRT-KDGKSRHLAFIGFRTNEEAAEALNYFN 303 V NL ADE L ++F G VT+ KVIR K + F+ +EAA A+ N Sbjct: 280 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 338
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 40.8 bits (94), Expect = 0.001 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%) Frame = +1 Query: 112 MSSRLCVKNLPKGADEKRLREVFSRKGEVTDA-KVIRTKDGKSRHLAFIGFRTNEEAAEA 288 + + L V NL DE+ L + FS G++ A +V R ++G+S+ F+ + + E A A Sbjct: 97 IGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAA 156 Query: 289 LNYFNNTYIDTSKITCEIARK 351 + NN ++ IT A K Sbjct: 157 IEAMNNQFLMNKPITVSYAFK 177
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 40.4 bits (93), Expect = 0.002 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 1/95 (1%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK-SRHLAFIGFRTNEEAAEALNYF 300 L V NL LR VF + G V D + R + K SR AF+ F +A +A++ Sbjct: 15 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 74 Query: 301 NNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKKP 405 + +D ++ ++AR PD S HS + P Sbjct: 75 DGAVLDGRELRVQMARYGRPPD-----SHHSRRGP 104
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 40.4 bits (93), Expect = 0.002 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 1/95 (1%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK-SRHLAFIGFRTNEEAAEALNYF 300 L V NL LR VF + G V D + R + K SR AF+ F +A +A++ Sbjct: 15 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 74 Query: 301 NNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKKP 405 + +D ++ ++AR PD S HS + P Sbjct: 75 DGAVLDGRELRVQMARYGRPPD-----SHHSRRGP 104
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 40.4 bits (93), Expect = 0.002 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 1/95 (1%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK-SRHLAFIGFRTNEEAAEALNYF 300 L V NL LR VF + G V D + R + K SR AF+ F +A +A++ Sbjct: 15 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 74 Query: 301 NNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKKP 405 + +D ++ ++AR PD S HS + P Sbjct: 75 DGAVLDGRELRVQMARYGRPPD-----SHHSRRGP 104
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 40.4 bits (93), Expect = 0.002 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 1/95 (1%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK-SRHLAFIGFRTNEEAAEALNYF 300 L V NL LR VF + G V D + R + K SR AF+ F +A +A++ Sbjct: 15 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 74 Query: 301 NNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKKP 405 + +D ++ ++AR PD S HS + P Sbjct: 75 DGAVLDGRELRVQMARYGRPPD-----SHHSRRGP 104
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 40.4 bits (93), Expect = 0.002 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%) Frame = +1 Query: 97 LAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNE 273 +AA + R V L + L F+ GE+ D+KVI ++ G+SR F+ F + Sbjct: 1 MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSEN 60 Query: 274 EAAEALNYFNNTYIDTSKITCEIARKIG 357 +A+ N +D IT A+ G Sbjct: 61 SMLDAIENMNGKELDGRNITVNQAQSRG 88
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 40.4 bits (93), Expect = 0.002 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 1/95 (1%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK-SRHLAFIGFRTNEEAAEALNYF 300 L V NL LR VF + G V D + R + K SR AF+ F +A +A++ Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75 Query: 301 NNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKKP 405 + +D ++ ++AR PD S HS + P Sbjct: 76 DGAVLDGRELRVQMARYGRPPD-----SHHSRRGP 105
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 40.0 bits (92), Expect = 0.002 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALNY 297 R V L +++ L+ FS+ G+V D+K+I ++ G+SR F+ F+ + +A+ Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66 Query: 298 FNNTYIDTSKITCEIARKIG 357 N +D IT A+ G Sbjct: 67 MNGKELDGRVITVNEAQSRG 86
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 38.9 bits (89), Expect = 0.005 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 1/86 (1%) Frame = +1 Query: 91 GNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDG-KSRHLAFIGFRT 267 GN A + L V L E+ LREVFS+ G + D ++ + +SR AF+ F Sbjct: 109 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN 168 Query: 268 NEEAAEALNYFNNTYIDTSKITCEIA 345 ++A EA N +D +I + + Sbjct: 169 VDDAKEAKERANGMELDGRRIRVDFS 194
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 38.9 bits (89), Expect = 0.005 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 1/86 (1%) Frame = +1 Query: 91 GNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDG-KSRHLAFIGFRT 267 GN A + L V L E+ LREVFS+ G + D ++ + +SR AF+ F Sbjct: 109 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN 168 Query: 268 NEEAAEALNYFNNTYIDTSKITCEIA 345 ++A EA N +D +I + + Sbjct: 169 VDDAKEAKERANGMELDGRRIRVDFS 194
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 38.9 bits (89), Expect = 0.005 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 1/86 (1%) Frame = +1 Query: 91 GNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDG-KSRHLAFIGFRT 267 GN A + L V L E+ LREVFS+ G + D ++ + +SR AF+ F Sbjct: 109 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN 168 Query: 268 NEEAAEALNYFNNTYIDTSKITCEIA 345 ++A EA N +D +I + + Sbjct: 169 VDDAKEAKERANGMELDGRRIRVDFS 194
>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)| (PPIase cyp6) (Rotamase cyp8) Length = 432 Score = 38.5 bits (88), Expect = 0.006 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALNYF 300 L V L ++ L +FSR G++ +VIR K+ G S AFI F E +A Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305 Query: 301 NNTYIDTSKITCEIARKI 354 N ID S+I + ++ + Sbjct: 306 QNVLIDDSRIHVDFSQSV 323
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 38.5 bits (88), Expect = 0.006 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = +1 Query: 139 LPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNYFNNTYI 315 LP+ ++ L+ +F GE+ K++R K G+S F+ + ++A +A+N N + Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 316 DTSKITCEIAR 348 T I AR Sbjct: 106 QTKTIKVSYAR 116 Score = 33.1 bits (74), Expect = 0.26 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRT-KDGKSRHLAFIGFRTNEEAAEALNYFN 303 V NL ADE L ++F G VT+ KVIR K + F+ +EAA A+ N Sbjct: 280 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 338
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 38.1 bits (87), Expect = 0.008 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Frame = +1 Query: 157 EKRLREVFSRKGEVTDAKVIRT-KDGKSRHLAFIGFRTNEEAAEALNYFNNTYIDTSKI 330 E+ LREVFSR G ++ V+ + G+SR AF+ F +++ EA+ N +D +I Sbjct: 132 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRI 190
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 38.1 bits (87), Expect = 0.008 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Frame = +1 Query: 157 EKRLREVFSRKGEVTDAKVIRT-KDGKSRHLAFIGFRTNEEAAEALNYFNNTYIDTSKI 330 E+ LREVFSR G ++ V+ + G+SR AF+ F +++ EA+ N +D +I Sbjct: 130 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRI 188
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 37.7 bits (86), Expect = 0.011 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 8/93 (8%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALNY 297 +L + L +EK L VF + G + + +++ ++ KSR AF+ F + +A +A Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 298 FNNTYIDTSKITCEIARK-------IGDPDAPR 375 N +D I E A K G P PR Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPR 101
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 37.7 bits (86), Expect = 0.011 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALNYFNN 306 + ++P+ E +LRE FS+ G VT ++ R+K G S+ A++ F +E A + NN Sbjct: 45 IGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDEVAKIVADTMNN 104 Query: 307 TYIDTSKITCE 339 + CE Sbjct: 105 YLFCERLLKCE 115
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 37.0 bits (84), Expect = 0.018 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKV-IRTKDGKSRHLAFIGFRTNEEAAEAL 291 S L + NL AD + E+F++ GEV ++ + + + ++ F E+A +AL Sbjct: 266 SDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKAL 325 Query: 292 NYFNNTYIDTSKITCEIARKIGDPDAPRPWSR 387 + YID + + + + D R SR Sbjct: 326 DALQGEYIDNRPVRLDFSSPRPNNDGGRGGSR 357
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 37.0 bits (84), Expect = 0.018 Identities = 23/91 (25%), Positives = 46/91 (50%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 V+NL + L+E+F GEV +A +I +K G R + + F NE +A++ F+ Sbjct: 126 VRNLTFDCTPEDLKELFGTVGEVVEADIITSK-GHHRGMGTVEFTKNESVQDAISKFDGA 184 Query: 310 YIDTSKITCEIARKIGDPDAPRPWSRHSLKK 402 K+ + + P+A + +S+ + ++ Sbjct: 185 LFMDRKLM--VRQDNPPPEAAKEFSKKATRE 213
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 36.6 bits (83), Expect = 0.023 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Frame = +1 Query: 109 AMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAE 285 ++ + + V +P+ E L +F + G + D +++ G +R AF+ F T E A E Sbjct: 69 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 128 Query: 286 ALNYFNNTYIDTSK 327 A+ +NN I + K Sbjct: 129 AVKLYNNHEIRSGK 142 Score = 31.2 bits (69), Expect = 0.99 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 5/99 (5%) Frame = +1 Query: 85 QHGNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGE-VTDAKVIRTKDG--KSRHLAFI 255 +H + ++RL V ++PK ++++ E FS+ E +TD + D K+R F+ Sbjct: 142 KHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFL 201 Query: 256 GFRTNEEAAEALNYFNNTYIDT--SKITCEIARKIGDPD 366 + ++ AA+A + + + T E A I DPD Sbjct: 202 EYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPD 240
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 36.6 bits (83), Expect = 0.023 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 1/97 (1%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALNYF 300 L V +LP+G E +L+ F + G+V +V R+K G S+ F+ F +E A Sbjct: 47 LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETM 106 Query: 301 NNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKKPEY 411 NN + I C + + S KKP+Y Sbjct: 107 NNYLMGERIIKCHVIPPEKVHEKLFVGSIAGFKKPKY 143
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 36.6 bits (83), Expect = 0.023 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Frame = +1 Query: 109 AMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAE 285 ++ + + V +P+ E L +F + G + D +++ G +R AF+ F T E A E Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218 Query: 286 ALNYFNNTYIDTSK 327 A+ +NN I + K Sbjct: 219 AVKLYNNHEIRSGK 232 Score = 31.2 bits (69), Expect = 0.99 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 5/99 (5%) Frame = +1 Query: 85 QHGNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGE-VTDAKVIRTKDG--KSRHLAFI 255 +H + ++RL V ++PK ++++ E FS+ E +TD + D K+R F+ Sbjct: 232 KHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFL 291 Query: 256 GFRTNEEAAEALNYFNNTYIDT--SKITCEIARKIGDPD 366 + ++ AA+A + + + T E A I DPD Sbjct: 292 EYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPD 330
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 36.6 bits (83), Expect = 0.023 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Frame = +1 Query: 109 AMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAE 285 ++ + + V +P+ E L +F + G + D +++ G +R AF+ F T E A E Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218 Query: 286 ALNYFNNTYIDTSK 327 A+ +NN I + K Sbjct: 219 AVKLYNNHEIRSGK 232 Score = 31.2 bits (69), Expect = 0.99 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 5/99 (5%) Frame = +1 Query: 85 QHGNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGE-VTDAKVIRTKDG--KSRHLAFI 255 +H + ++RL V ++PK ++++ E FS+ E +TD + D K+R F+ Sbjct: 232 KHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFL 291 Query: 256 GFRTNEEAAEALNYFNNTYIDT--SKITCEIARKIGDPD 366 + ++ AA+A + + + T E A I DPD Sbjct: 292 EYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPD 330
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 36.2 bits (82), Expect = 0.031 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Frame = +1 Query: 166 LREVFSRKGEVTDAKVI-RTKDGKSRHLAFIGFRTNEEAAEALNYFNNTYIDTSKITCEI 342 L+ +FSR G+V AKV+ + +R F+ T EEA + +N+ + T + I+ E Sbjct: 444 LKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEK 503 Query: 343 AR 348 A+ Sbjct: 504 AK 505
>PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 504 Score = 36.2 bits (82), Expect = 0.031 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIR-TKDGKSRHLAFIGFRTNEEAAEALNYF 300 L V L ++ L +FSR G++ +V+R K G S AFI F E A +A Sbjct: 248 LFVCKLNPVTQDEDLELIFSRFGKILSCEVVRDKKSGDSLQYAFIEFDEREAAEQAYFKM 307 Query: 301 NNTYIDTSKITCEIARKI 354 N +D +I + ++ + Sbjct: 308 QNVLVDDRRIWVDFSQSV 325
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 35.8 bits (81), Expect = 0.040 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 8/93 (8%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALNY 297 +L + L +EK L VF + G + + +++ ++ KSR AF+ F + +A + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 298 FNNTYIDTSKITCEIARK-------IGDPDAPR 375 N +D I E A K G P PR Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPR 101
>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 278 Score = 35.0 bits (79), Expect = 0.068 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALNYFNN 306 + ++PK E +L+E F++ G VT ++ R+K G S+ A++ + +E A + NN Sbjct: 45 IGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEYECDEVAKIVADTMNN 104 Query: 307 TYIDTSKITCE 339 + CE Sbjct: 105 YLFCERLLKCE 115
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 35.0 bits (79), Expect = 0.068 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Frame = +1 Query: 100 AADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEE 276 A D + V N+P A E++L+++FS G V +++ ++ GK + F ++ E Sbjct: 10 AMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQET 69 Query: 277 AAEALNYFN 303 A A+ N Sbjct: 70 ALSAMRNLN 78
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 35.0 bits (79), Expect = 0.068 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Frame = +1 Query: 166 LREVFSRKGEVTDAKVI-RTKDGKSRHLAFIGFRTNEEAAEALNYFNNTYIDTSKITCEI 342 L+ +FS+ G+V AKV+ + +R F+ T EEA + +N+ + T + I+ E Sbjct: 422 LKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEK 481 Query: 343 AR 348 A+ Sbjct: 482 AK 483
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 35.0 bits (79), Expect = 0.068 Identities = 17/67 (25%), Positives = 34/67 (50%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 + LP+ E L + + G++ + +++ +G +R AF+ F +EA A+ NN Sbjct: 60 IGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGNNRGYAFVTFSNKQEAKNAIKQLNNY 119 Query: 310 YIDTSKI 330 I T ++ Sbjct: 120 EIRTGRL 126
>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export| factor-binding protein 1) (REF1-I) (Ally of AML-1 and LEF-1) (Aly/REF) Length = 254 Score = 35.0 bits (79), Expect = 0.068 Identities = 20/76 (26%), Positives = 35/76 (46%) Frame = +1 Query: 91 GNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTN 270 G A +L V NL G + ++E+F+ G + A V + G+S A + F Sbjct: 95 GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK 154 Query: 271 EEAAEALNYFNNTYID 318 +A +A+ +N +D Sbjct: 155 ADALKAMKQYNGVPLD 170
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)| (Transcriptional coactivator Aly/REF) (bZIP-enhancing factor BEF) Length = 256 Score = 35.0 bits (79), Expect = 0.068 Identities = 20/76 (26%), Positives = 35/76 (46%) Frame = +1 Query: 91 GNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTN 270 G A +L V NL G + ++E+F+ G + A V + G+S A + F Sbjct: 96 GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK 155 Query: 271 EEAAEALNYFNNTYID 318 +A +A+ +N +D Sbjct: 156 ADALKAMKQYNGVPLD 171
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 35.0 bits (79), Expect = 0.068 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAK-VIRTKDGKSRHLAFIGFRTNEEAAEALNYFNN 306 V N+P E+++ E+F++ G V K V+ + G + F F +E A A+ NN Sbjct: 11 VGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNN 70 Query: 307 TYIDTSKITCE 339 + + KI E Sbjct: 71 SELGPRKIRVE 81
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 35.0 bits (79), Expect = 0.068 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Frame = +1 Query: 100 AADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEE 276 A D + V N+P A E++L+++FS G V +++ ++ GK + F ++ E Sbjct: 10 AMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQET 69 Query: 277 AAEALNYFN 303 A A+ N Sbjct: 70 ALSAMRNLN 78
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 35.0 bits (79), Expect = 0.068 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Frame = +1 Query: 100 AADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEE 276 A D + V N+P A E++L+++FS G V +++ ++ GK + F ++ E Sbjct: 10 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQET 69 Query: 277 AAEALNYFN 303 A A+ N Sbjct: 70 ALSAMRNLN 78
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 35.0 bits (79), Expect = 0.068 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Frame = +1 Query: 100 AADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEE 276 A D + V N+P A E++L+++FS G V +++ ++ GK + F ++ E Sbjct: 10 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQET 69 Query: 277 AAEALNYFN 303 A A+ N Sbjct: 70 ALSAMRNLN 78
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 35.0 bits (79), Expect = 0.068 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Frame = +1 Query: 100 AADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEE 276 A D + V N+P A E++L+++FS G V +++ ++ GK + F ++ E Sbjct: 10 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQET 69 Query: 277 AAEALNYFN 303 A A+ N Sbjct: 70 ALSAMRNLN 78
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 35.0 bits (79), Expect = 0.068 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 19/112 (16%) Frame = +1 Query: 100 AADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVI-RTKDGKSRHLAFIGFRTNEE 276 A+ + L V L L+ +FS+ G+V AKV+ + +R F+ T++E Sbjct: 445 ASCSSGRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDE 504 Query: 277 AAEALNYFNNTYI------------------DTSKITCEIARKIGDPDAPRP 378 A + +++ + T + + + C+ K+ PD P P Sbjct: 505 ATKCISHLHRTELHGRMISVEKAKNEPSEKKSSDRRACDQKEKVPGPDRPHP 556
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 35.0 bits (79), Expect = 0.068 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Frame = +1 Query: 100 AADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEE 276 A D + V N+P A E++L+++FS G V +++ ++ GK + F ++ E Sbjct: 10 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQET 69 Query: 277 AAEALNYFN 303 A A+ N Sbjct: 70 ALSAMRNLN 78
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 34.7 bits (78), Expect = 0.089 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 3/90 (3%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKV-IRTKDGKSRHLAFIGFRTNEEAAEALNYF 300 L V L + D+K L F G++TD ++ + + K R AF+ F E+AA A++ Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 301 NNTYIDTSKITCEIAR--KIGDPDAPRPWS 384 N + + I +A+ +I + + WS Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSRPVWS 97
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 34.7 bits (78), Expect = 0.089 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 3/90 (3%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKV-IRTKDGKSRHLAFIGFRTNEEAAEALNYF 300 L V L + D+K L F G++TD ++ + + K R AF+ F E+AA A++ Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 301 NNTYIDTSKITCEIAR--KIGDPDAPRPWS 384 N + + I +A+ +I + + WS Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSRPVWS 97
>IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 RNA-binding| subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 274 Score = 34.7 bits (78), Expect = 0.089 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Frame = +1 Query: 124 LCVKNLPKGADEKRLRE-VFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALNY 297 L + + + ADE LRE + + V+R K+ GKSR LAF+ F + E A +AL + Sbjct: 193 LKIMQVNENADENSLREELLFPFAPIPRVSVVRNKETGKSRGLAFVTFSSEEVAEQALRF 252 Query: 298 FN 303 + Sbjct: 253 LD 254
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 34.7 bits (78), Expect = 0.089 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 8/93 (8%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALNY 297 +L + L +EK L VF + G + + +++ ++ KSR AF+ + +A +A Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 298 FNNTYIDTSKITCEIARK-------IGDPDAPR 375 N +D I E A K G P PR Sbjct: 69 MNGKSLDGKAIKVEQATKPFFESGRRGPPPPPR 101
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 34.3 bits (77), Expect = 0.12 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Frame = +1 Query: 103 ADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGF 261 A A +L V L DE+ LRE F G++ ++ KD GK R AFI F Sbjct: 110 AGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEF 163
>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2| Length = 218 Score = 34.3 bits (77), Expect = 0.12 Identities = 19/82 (23%), Positives = 38/82 (46%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 297 ++L V NL G + ++E+F+ G + A V + G+S A + F +A +A+ Sbjct: 75 AKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQ 134 Query: 298 FNNTYIDTSKITCEIARKIGDP 363 + +D + ++ DP Sbjct: 135 YKGVPLDGRPMDIQLVASQIDP 156
>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 34.3 bits (77), Expect = 0.12 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 1/94 (1%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNYF 300 L V L ++ L +FSR G++ +VIR K G S AFI F + ++ +A Sbjct: 250 LFVCKLNPVTQDEDLELIFSRFGKILSCEVIRDKRTGDSLQYAFIEFESQKDCEQAYFKM 309 Query: 301 NNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKK 402 ID +I + ++ + W ++KK Sbjct: 310 QGVLIDDHRIHVDFSQSVS--KLSESWRDATVKK 341
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3664 Score = 33.9 bits (76), Expect = 0.15 Identities = 19/60 (31%), Positives = 30/60 (50%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 303 L V NLP+ E+++ E F R G V K++ + + AF+ F + A +A N N Sbjct: 8 LWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKAHNSVN 67
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 33.9 bits (76), Expect = 0.15 Identities = 19/60 (31%), Positives = 30/60 (50%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 303 L V NLP+ E+++ E F R G V K++ + + AF+ F + A +A N N Sbjct: 8 LWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKAHNSVN 67
>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1| Length = 476 Score = 33.5 bits (75), Expect = 0.20 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Frame = +1 Query: 139 LPKGADEKRLREVFSRKGEVTDAKVIRTKDGK-SRHLAFIGFRTNEEAAEALNYFNNTYI 315 + K E LRE FS G++ D V+R K K S+ +AF+ F + +A A+ + + Sbjct: 32 ISKYTSESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCL 91 Query: 316 ---DTSKITCEIAR 348 DT I IA+ Sbjct: 92 GPNDTKPIKVFIAQ 105 Score = 32.7 bits (73), Expect = 0.34 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Frame = +1 Query: 139 LPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNYFNNTY 312 +PK E+ LRE F G++ VI+ K G+S+ L ++ + +AA+A+ + ++ Sbjct: 127 IPKSYTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSF 185
>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 459 Score = 33.1 bits (74), Expect = 0.26 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNYF 300 L V L ++ L+ +FSR G + +VIR K G S AFI F ++ +A Sbjct: 250 LFVCKLNPVTQDEDLQLIFSRFGPILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKM 309 Query: 301 NNTYIDTSKITCEIARKI 354 ID +I + ++ + Sbjct: 310 QGVLIDDHRIHVDFSQSV 327
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 33.1 bits (74), Expect = 0.26 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVI-RTKDGKSRHLAFIGFRTNEEAAEALNYF 300 L V L L+ +FS+ G+V AKV+ + +R F+ T++EA + +++ Sbjct: 409 LWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHL 468 Query: 301 NNTYIDTSKITCEIAR 348 + T + I+ E A+ Sbjct: 469 HRTELHGRMISVEKAK 484
>DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 33.1 bits (74), Expect = 0.26 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Frame = +1 Query: 139 LPKGADEKRLREVFSRKGEVTDAKVIRTKDGK-SRHLAFIGFRTNEEAAEALNYFNNTYI 315 + K E LRE FS G++ D V+R K K S+ +AF+ F + +A A+ + + Sbjct: 32 ISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCL 91 Query: 316 ---DTSKITCEIAR 348 DT I IA+ Sbjct: 92 GPNDTKPIKVFIAQ 105 Score = 32.3 bits (72), Expect = 0.44 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Frame = +1 Query: 139 LPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNYFNNTY 312 +PK E+ LRE F G++ +I+ K G+S+ L ++ + +AA+A+ + ++ Sbjct: 127 IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSF 185
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 33.1 bits (74), Expect = 0.26 Identities = 16/67 (23%), Positives = 33/67 (49%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 + LP+ E L + + G++ + +++ +G +R AF+ F +EA A+ NN Sbjct: 60 IGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKQEAKNAIKQLNNY 119 Query: 310 YIDTSKI 330 I ++ Sbjct: 120 EIRNGRL 126
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 32.7 bits (73), Expect = 0.34 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEA 279 +R+ V + E L VFS G V K+I + G S+ F+ F T +EA Sbjct: 33 NRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKGYGFVTFETEQEA 86
>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 32.7 bits (73), Expect = 0.34 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Frame = +1 Query: 139 LPKGADEKRLREVFSRKGEVTDAKVIRTKDGK-SRHLAFIGFRTNEEAAEALNYFNNTYI 315 + K E LRE FS G++ D V+R K K S+ +AF+ F + +A A+ + + Sbjct: 32 ISKHTSELVLRERFSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQACRAMEEMHGQCL 91 Query: 316 ---DTSKITCEIAR 348 DT I IA+ Sbjct: 92 GPSDTKPIKVFIAQ 105 Score = 32.3 bits (72), Expect = 0.44 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Frame = +1 Query: 139 LPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNYFNNTY 312 +PK E+ LRE F G++ +I+ K G+S+ L ++ + +AA+A+ + ++ Sbjct: 127 IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSF 185
>YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 intergenic| region Length = 713 Score = 32.7 bits (73), Expect = 0.34 Identities = 22/85 (25%), Positives = 39/85 (45%) Frame = +1 Query: 94 NLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNE 273 +LAA LC+ + E F + G++ KV+R D +R AF+ + + Sbjct: 99 SLAAALSDDELCLS----------VTENFKKYGDLARVKVLR--DNANRPYAFVQYNNDH 146 Query: 274 EAAEALNYFNNTYIDTSKITCEIAR 348 +A AL T ++ ++ CE A+ Sbjct: 147 DAKHALIRAQGTLLNGRRLRCEPAK 171
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 32.7 bits (73), Expect = 0.34 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNYF 300 L V L ++ L +FSR G + +VIR K G S AFI F ++ +A Sbjct: 250 LFVCKLNPVTQDEDLHLIFSRFGTILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKM 309 Query: 301 NNTYIDTSKITCEIARKI 354 ID +I + ++ + Sbjct: 310 QGVLIDDHRIHVDFSQSV 327
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 32.3 bits (72), Expect = 0.44 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRT-KDGKSRHLAFIGFRTNEEAAEALNYFN 303 V NL ADE L ++F G VT+ KVIR K + F+ +EAA A+ N Sbjct: 288 VYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN 346
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 32.3 bits (72), Expect = 0.44 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRT-KDGKSRHLAFIGFRTNEEAAEALNYFN 303 V NL ADE L ++F G VT+ KVIR K + F+ +EAA A+ N Sbjct: 288 VYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN 346
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 32.0 bits (71), Expect = 0.58 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = +1 Query: 112 MSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGF 261 M + + V + DE +R F+R G V + K+I + G S+ F+ F Sbjct: 38 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSF 87
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 32.0 bits (71), Expect = 0.58 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = +1 Query: 112 MSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGF 261 M + + V + DE +R F+R G V + K+I + G S+ F+ F Sbjct: 38 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSF 87
>RNP4F_DROME (Q9W4D2) RNA-binding protein 4F| Length = 941 Score = 32.0 bits (71), Expect = 0.58 Identities = 14/58 (24%), Positives = 32/58 (55%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEAL 291 +++ V+NL ++ L E+FS G + D +++ + + + +A++ F EA A+ Sbjct: 724 NKIFVRNLHPACSKEELHELFSPFGTIKDVRLVHKLNKQFKGIAYVEFEKPGEAQRAV 781
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 32.0 bits (71), Expect = 0.58 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = +1 Query: 112 MSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGF 261 M + + V + DE +R F+R G V + K+I + G S+ F+ F Sbjct: 38 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSF 87
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 32.0 bits (71), Expect = 0.58 Identities = 16/58 (27%), Positives = 29/58 (50%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 303 V NL E+ L E+F + G +T + + ++GK + F+ F+ E + A+ N Sbjct: 14 VGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 32.0 bits (71), Expect = 0.58 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIR-TKDGKSRHLAFIGFRTNEEAAEAL 291 S ++ + L E LRE F + G VTD K+++ G+SR F+ F E + Sbjct: 158 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVV 217
>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap| binding protein) (NCBP 20 kDa subunit) (CBP20) (Fragment) Length = 148 Score = 31.6 bits (70), Expect = 0.76 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDA-----KVIRTKDGKSRHLAFIGFRTNEEA 279 S L V NL E+++ E+FS+ G+V KV +T G F+ + T +A Sbjct: 31 SCTLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACG----FCFVEYYTRADA 86 Query: 280 AEALNYFNNTYID 318 A+ + N T +D Sbjct: 87 GTAMRFINGTRLD 99
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 31.6 bits (70), Expect = 0.76 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 5/103 (4%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEAL-- 291 +L V L DE+ LRE F + G V K++ K GK R AF+ F + +A+ Sbjct: 124 KLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILK 183 Query: 292 --NYFNNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKKPEYN 414 + ++D K + +K + +P + KP N Sbjct: 184 KQHAIKYVHVDVKKSIYNLDKK----EKQQPGGLANAIKPSLN 222
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 31.6 bits (70), Expect = 0.76 Identities = 16/67 (23%), Positives = 32/67 (47%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 + LP+ E L + + G++ + +++ +G +R AF+ F EA A+ NN Sbjct: 60 IGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNY 119 Query: 310 YIDTSKI 330 I ++ Sbjct: 120 EIRNGRL 126
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 31.2 bits (69), Expect = 0.99 Identities = 16/67 (23%), Positives = 32/67 (47%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 309 + LP+ E L + + G++ + +++ +G +R AF+ F EA A+ NN Sbjct: 60 IGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKLEAKNAIKQLNNY 119 Query: 310 YIDTSKI 330 I ++ Sbjct: 120 EIRNGRL 126
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 31.2 bits (69), Expect = 0.99 Identities = 17/57 (29%), Positives = 26/57 (45%) Frame = +1 Query: 172 EVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNTYIDTSKITCEI 342 + FSR G++ K+ KD + F+ F + A + +NNT KI C I Sbjct: 200 DTFSRYGKILSCKLDSRKD-----IGFVYFEDEKTARNVIKMYNNTSFFGKKILCGI 251 Score = 28.1 bits (61), Expect = 8.3 Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 1/80 (1%) Frame = +1 Query: 94 NLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHL-AFIGFRTN 270 N+ + + +S + +KNLP + FS G + + + K ++L AF+ ++ + Sbjct: 296 NIYSSSQNS-IFIKNLPTITTRDDILNFFSEVGPIKS--IYLSNATKVKYLWAFVTYKNS 352 Query: 271 EEAAEALNYFNNTYIDTSKI 330 ++ +A+ +NN Y K+ Sbjct: 353 SDSEKAIKRYNNFYFRGKKL 372
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 31.2 bits (69), Expect = 0.99 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Frame = +1 Query: 136 NLPKGADEKRLREVFSRKGEVTDAKVI-RTKDGKSRHLAFIGFRTNEEAAEALNYFNNTY 312 ++P E+++ ++ S G V + K++ + G+S+ AFI FR E +A A+ N Sbjct: 24 SIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQ 83 Query: 313 IDTSKITC 336 + + + C Sbjct: 84 LGSRFLKC 91
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 31.2 bits (69), Expect = 0.99 Identities = 20/60 (33%), Positives = 29/60 (48%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 294 S+ L V+NLP+ + L E FS G+V A VI G+ + F A +AL+ Sbjct: 147 SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALD 206
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 31.2 bits (69), Expect = 0.99 Identities = 20/60 (33%), Positives = 29/60 (48%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 294 S+ L V+NLP+ + L E FS G+V A VI G+ + F A +AL+ Sbjct: 147 SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALD 206
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 31.2 bits (69), Expect = 0.99 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = +1 Query: 112 MSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGF 261 M + + V + DE +R F+R G V + K+I + G S+ F+ F Sbjct: 38 MPNTVFVGGIDVRMDETEIRGFFARYGSVKEVKIITDRTGVSKGYGFVSF 87
>MLO3_SCHPO (Q09330) Protein mlo3| Length = 199 Score = 31.2 bits (69), Expect = 0.99 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRK-GEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 294 S++ V NLP E +++E+F + G + +G+S+ +A I F +A A Sbjct: 55 SKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGDATRAYE 114 Query: 295 YFNNTYID-TSKITCEI 342 + +D T K+ EI Sbjct: 115 QYEGRLVDGTRKMKVEI 131
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 31.2 bits (69), Expect = 0.99 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 6/65 (9%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFS---RKGEVTDAK---VIRTKDGKSRHLAFIGFRTNEEAA 282 RL V N+P G E+ + + F+ R G +T A V+ + + ++ AF+ FR+ +E Sbjct: 150 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 209 Query: 283 EALNY 297 +A+ + Sbjct: 210 QAMAF 214
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 31.2 bits (69), Expect = 0.99 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 6/65 (9%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFS---RKGEVTDAK---VIRTKDGKSRHLAFIGFRTNEEAA 282 RL V N+P G E+ + + F+ R G +T A V+ + + ++ AF+ FR+ +E Sbjct: 150 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 209 Query: 283 EALNY 297 +A+ + Sbjct: 210 QAMAF 214
>RU1A_YEAST (P32605) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)| (U1-A) Length = 298 Score = 31.2 bits (69), Expect = 0.99 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 303 L ++NLP G E+ L ++ + V V R+LAF+ + T +A + N Sbjct: 229 LLIQNLPSGTTEQLLSQILGNEALVEIRLV------SVRNLAFVEYETVADATKIKNQLG 282 Query: 304 NTY-IDTSKITCEIAR 348 +TY + + +T A+ Sbjct: 283 STYKLQNNDVTIGFAK 298
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 31.2 bits (69), Expect = 0.99 Identities = 20/60 (33%), Positives = 29/60 (48%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 294 S+ L V+NLP+ + L E FS G+V A VI G+ + F A +AL+ Sbjct: 152 SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALD 211
>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)| Length = 535 Score = 31.2 bits (69), Expect = 0.99 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAF--IGFRTNEEAAE 285 +RL + NL E+ L+E+FS GE+++A + ++ AF I +R N E A+ Sbjct: 113 NRLYIGNLTSDVTEEELKELFSPYGEISEAFI-----NAEKNFAFLKIDYRANAERAK 165
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 31.2 bits (69), Expect = 0.99 Identities = 20/60 (33%), Positives = 29/60 (48%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 294 S+ L V+NLP+ + L E FS G+V A VI G+ + F A +AL+ Sbjct: 149 SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALD 208
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 30.8 bits (68), Expect = 1.3 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK-SRHLAFIGFRTNEEAAEALNY 297 +L + L ++ LRE F + G +TD V+R + K SR F+ + + +E A+ Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTA 74 Query: 298 FNNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKK 402 + +D + E R + D+ RP + ++KK Sbjct: 75 RPHK-VDGRVV--EPKRAVSREDSSRPGAHLTVKK 106
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 30.8 bits (68), Expect = 1.3 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIR-TKDGKSRHLAFIGFRTNEEAAEAL 291 S+ + V LP E + VFS+ GE+ + ++R K GKS+ F+ + A+ Sbjct: 35 SAWIFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAV 94 Query: 292 NYFNNTYI 315 + FN I Sbjct: 95 DNFNGIKI 102
>RNP1_CAEEL (Q10667) RNA-binding protein rnp-1| Length = 305 Score = 30.4 bits (67), Expect = 1.7 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = +1 Query: 112 MSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIR 219 M S+L V NLP D +L++VF +VT+ +++ Sbjct: 1 MPSKLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVK 36
>NELFE_HUMAN (P18615) Negative elongation factor E (NELF-E) (RD protein)| Length = 380 Score = 30.0 bits (66), Expect = 2.2 Identities = 18/62 (29%), Positives = 30/62 (48%) Frame = +1 Query: 166 LREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNTYIDTSKITCEIA 345 LR FS G + D + R+ AF+ + E A +A+ N T +++ ++ IA Sbjct: 276 LRGAFSPFGNIIDLSM-----DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 330 Query: 346 RK 351 RK Sbjct: 331 RK 332
>NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting suppressor 1| protein) (Nuclear polyadenylated RNA-binding protein 1) Length = 414 Score = 30.0 bits (66), Expect = 2.2 Identities = 21/73 (28%), Positives = 32/73 (43%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYF 300 R+ +KNLP+G + L+++ T + T+D + F + E EAL Sbjct: 201 RITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDG--TGALEFPSEEILVEALERL 258 Query: 301 NNTYIDTSKITCE 339 NN S IT E Sbjct: 259 NNIEFRGSVITVE 271
>NELFE_MOUSE (P19426) Negative elongation factor E (NELF-E) (RD protein)| Length = 375 Score = 30.0 bits (66), Expect = 2.2 Identities = 18/62 (29%), Positives = 30/62 (48%) Frame = +1 Query: 166 LREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNTYIDTSKITCEIA 345 LR FS G + D + R+ AF+ + E A +A+ N T +++ ++ IA Sbjct: 280 LRGAFSPFGNIIDLSM-----DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 334 Query: 346 RK 351 RK Sbjct: 335 RK 336
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 30.0 bits (66), Expect = 2.2 Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 5/99 (5%) Frame = +1 Query: 85 QHGNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGE-VTDAKVIRTKDG--KSRHLAFI 255 +H + ++RL V ++PK ++ + E FS+ E + D + D K+R F+ Sbjct: 235 KHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFL 294 Query: 256 GFRTNEEAAEALNYFNNTYIDT--SKITCEIARKIGDPD 366 + ++ AA+A + + + +T E A + +PD Sbjct: 295 EYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPD 333
>RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40| Length = 350 Score = 30.0 bits (66), Expect = 2.2 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%) Frame = +1 Query: 151 ADEKRLREV---FSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNTYIDT 321 AD R R++ F G++ + ++ R+ AFI + E+A AL+ NN+ + Sbjct: 106 ADNTRTRDLEKHFEPYGKIVNVRI-------RRNFAFIQYEAQEDATRALDASNNSKLMD 158 Query: 322 SKITCEIARKIGD 360 I+ E A K D Sbjct: 159 KVISVEYAVKDDD 171
>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)| Length = 229 Score = 29.6 bits (65), Expect = 2.9 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = +1 Query: 124 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGF 261 L V + DE +RE F++ G V + K+I + G + F+ F Sbjct: 49 LFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKGYGFVYF 94
>SYM_BORBU (Q44951) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 734 Score = 29.3 bits (64), Expect = 3.7 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = +1 Query: 301 NNTYIDTSKITCEIARKIGDPDAPRPWSRHSLK 399 N+ Y+D KI ++ + I +PD + W+ ++LK Sbjct: 185 NHLYLDLPKIKTKLEKWIKNPDTSKNWNTNALK 217
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 29.3 bits (64), Expect = 3.7 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK-SRHLAFIGFRTNEEAAEAL 291 ++ V L + +RE +S+ GE+TD V+R K SR F+ F E A+ Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAM 81
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 29.3 bits (64), Expect = 3.7 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Frame = +1 Query: 115 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIR-TKDGKSRHLAFIGFRTNEEAAEAL 291 S+ + + LP E + VFS+ GE+ + ++R K GKS+ F+ + A+ Sbjct: 35 SAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAV 94 Query: 292 NYFNNTYI 315 + FN I Sbjct: 95 DNFNGIKI 102
>RB11B_TOBAC (Q40521) Ras-related protein Rab11B| Length = 217 Score = 28.9 bits (63), Expect = 4.9 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 3/86 (3%) Frame = +1 Query: 130 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKS---RHLAFIGFRTNEEAAEALNYF 300 +K L D+ + + K ++ + + T+D K+ R F + E+ N F Sbjct: 109 LKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAF 168 Query: 301 NNTYIDTSKITCEIARKIGDPDAPRP 378 + K+ C A ++GD A P Sbjct: 169 TEVLTEIYKVVCRKALEVGDDPAALP 194
>YAS9_SCHPO (Q10145) Hypothetical RNA-binding protein C3H8.09c in chromosome I| Length = 738 Score = 28.9 bits (63), Expect = 4.9 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Frame = +1 Query: 115 SSRLCVKNL-PKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEAL 291 +SRL + +L K ++ L +VF G + V++ G F+ F TNE+ A AL Sbjct: 362 ASRLFLGHLNTKSLSKRNLWKVFKIYGPLAQI-VLKANYG------FVQFFTNEDCARAL 414 Query: 292 NYFNNTYIDTSKITCEIAR 348 N ++ K+ EI++ Sbjct: 415 NAEQGNFVRGQKLHLEISK 433
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 28.5 bits (62), Expect = 6.4 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 1/95 (1%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK-SRHLAFIGFRTNEEAAEALNY 297 +L + L + LRE F + G++TD V+R K SR F+ + EE +++ Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87 Query: 298 FNNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKK 402 + +D + E R + D+ RP + ++KK Sbjct: 88 RPHK-VDGRVV--EPKRAVSREDSARPGAHLTVKK 119
>CF170_HUMAN (Q96NH3) Protein C6orf170| Length = 1247 Score = 28.5 bits (62), Expect = 6.4 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%) Frame = -2 Query: 366 IRVTNLPSNLTGDLRSVNVCIVEIVEGLRCLFIGSET---NKCKMPALSILGSDDFGVRH 196 +R +LP+ LR V C+++I++ R + + SE + I G DF + Sbjct: 796 VRNQDLPNKTEYSLREVPTCVIDIID--RLIILNSEAKIRSLFNYEQSHIFGLRDFIIDG 853 Query: 195 LALPREHL 172 L++ R H+ Sbjct: 854 LSVERNHV 861
>HDAC6_MOUSE (Q9Z2V5) Histone deacetylase 6 (HD6) (Histone deacetylase mHDA2)| Length = 1149 Score = 28.5 bits (62), Expect = 6.4 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +1 Query: 106 DAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRT 222 + SSRL VK LP A +E+ + KG+V + V +T Sbjct: 843 ECSSSRLVVKKLPPTASPVSAKEMTTPKGKVPEESVRKT 881
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 28.5 bits (62), Expect = 6.4 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 1/95 (1%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK-SRHLAFIGFRTNEEAAEALNY 297 +L + L + LRE F + G++TD V+R K SR F+ + EE +++ Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87 Query: 298 FNNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKK 402 + +D + E R + D+ RP + ++KK Sbjct: 88 RPHK-VDGRVV--EPKRAVSREDSARPGAHLTVKK 119
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 28.5 bits (62), Expect = 6.4 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Frame = +1 Query: 100 AADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKV-IRTKDGKSRHLAFIGFRTNEE 276 AA ++ + L +K L++ FS+ GEV D + + G+SR F+ F+ +E Sbjct: 91 AAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESES 150 Query: 277 AAEALN 294 + ++ Sbjct: 151 VDKVMD 156
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 28.1 bits (61), Expect = 8.3 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 1/82 (1%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKV-IRTKDGKSRHLAFIGFRTNEEAAEALN 294 + L + +LP+ ++ L ++F G V AKV I + S+ F+ + A A+ Sbjct: 401 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 460 Query: 295 YFNNTYIDTSKITCEIARKIGD 360 N I ++ ++ R D Sbjct: 461 SMNGFQIGMKRLKVQLKRSKND 482
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 28.1 bits (61), Expect = 8.3 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 1/82 (1%) Frame = +1 Query: 118 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKV-IRTKDGKSRHLAFIGFRTNEEAAEALN 294 + L + +LP+ ++ L ++F G V AKV I + S+ F+ + A A+ Sbjct: 401 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 460 Query: 295 YFNNTYIDTSKITCEIARKIGD 360 N I ++ ++ R D Sbjct: 461 SMNGFQIGMKRLKVQLKRSKND 482
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 28.1 bits (61), Expect = 8.3 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Frame = +1 Query: 121 RLCVKNLPKGADEKRLREVFSRKGEVTDAKV-IRTKDGKSRHLAFIGFRTNEEAAEALNY 297 ++ V L A E+++RE F + GE+ ++ I K K R FI F+ + + L Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVL-- 217 Query: 298 FNNTYIDTSKITCEIARKIGDP 363 + S CEI K+ P Sbjct: 218 -EKKFHTVSGSKCEI--KVAQP 236 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.131 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,914,932 Number of Sequences: 219361 Number of extensions: 747700 Number of successful extensions: 2232 Number of sequences better than 10.0: 200 Number of HSP's better than 10.0 without gapping: 2074 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2213 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
