>ref|XM_473857.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2715

 Score =  359 bits (181), Expect = 5e-96
 Identities = 274/305 (89%)
 Strand = Plus / Plus

                                                                       
Query: 110 ccatgtcgtcgcggctgtgcgtgaagaatctgcccaagggcgccgacgagaagcggctgc 169
           |||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||
Sbjct: 59  ccatgtcgtcgcggctgtgcgtgaagaacctgcccaagggcgccgacgaggggcggctgc 118

                                                                       
Query: 170 gggaggtgttctcgcggaagggcgaggtgacggacgccaaagtcatccgaaccaaggatg 229
           |||||||||||||||||||||| ||||| || |||||||| |||||||| ||||||||||
Sbjct: 119 gggaggtgttctcgcggaagggggaggtcaccgacgccaaggtcatccgcaccaaggatg 178

                                                                       
Query: 230 gaaagagcaggcatcttgcatttattggtttcagaaccaatgaagaggcagcggaggccc 289
           |||||||||||||  |||||||  ||||||||||||| || || ||||||| ||| || |
Sbjct: 179 gaaagagcaggcaatttgcattcgttggtttcagaactaacgaggaggcagaggaagcac 238

                                                                       
Query: 290 tcaactatttcaacaatacatacattgacacttctaagatcacctgtgagattgctcgga 349
           |||| ||||||||||| |||||||| ||||||| |||||||||||| ||| ||||||| |
Sbjct: 239 tcaagtatttcaacaacacatacatcgacacttgtaagatcacctgcgaggttgctcgta 298

                                                                       
Query: 350 agattggtgaccctgatgctcctcgcccttggagtcgccattctttaaaaaagccagaat 409
           |||||||||| ||||| ||||||||||||||||| || ||||||||||| ||||| ||||
Sbjct: 299 agattggtgatcctgaagctcctcgcccttggagccgtcattctttaaagaagcctgaat 358

                
Query: 410 ataat 414
           |||||
Sbjct: 359 ataat 363

>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17,
             complete sequence
          Length = 160484

 Score =  159 bits (80), Expect = 9e-36
 Identities = 104/112 (92%)
 Strand = Plus / Minus

                                                                         
Query: 114   gtcgtcgcggctgtgcgtgaagaatctgcccaagggcgccgacgagaagcggctgcggga 173
             |||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||
Sbjct: 29561 gtcgtcgcggctgtgcgtgaagaacctgcccaagggcgccgacgaggggcggctgcggga 29502

                                                                 
Query: 174   ggtgttctcgcggaagggcgaggtgacggacgccaaagtcatccgaaccaag 225
             |||||||||||||||||| ||||| || |||||||| |||||||| ||||||
Sbjct: 29501 ggtgttctcgcggaagggggaggtcaccgacgccaaggtcatccgcaccaag 29450



 Score =  109 bits (55), Expect = 7e-21
 Identities = 97/111 (87%)
 Strand = Plus / Minus

                                                                         
Query: 225   ggatggaaagagcaggcatcttgcatttattggtttcagaaccaatgaagaggcagcgga 284
             ||||||||||||||||||  |||||||  ||||||||||||| || || ||||||| |||
Sbjct: 28929 ggatggaaagagcaggcaatttgcattcgttggtttcagaactaacgaggaggcagagga 28870

                                                                
Query: 285   ggccctcaactatttcaacaatacatacattgacacttctaagatcacctg 335
              || ||||| ||||||||||| |||||||| ||||||| ||||||||||||
Sbjct: 28869 agcactcaagtatttcaacaacacatacatcgacacttgtaagatcacctg 28819



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                         
Query: 341   ttgctcggaagattggtgaccctgatgctcctcgcccttggagtcgccattctttaaaaa 400
             ||||||| ||||||||||| ||||| ||||||||||||||||| || ||||||||||| |
Sbjct: 28649 ttgctcgtaagattggtgatcctgaagctcctcgcccttggagccgtcattctttaaaga 28590

                           
Query: 401   agccagaatataat 414
             |||| |||||||||
Sbjct: 28589 agcctgaatataat 28576

>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10,
              complete sequence
          Length = 150551

 Score =  159 bits (80), Expect = 9e-36
 Identities = 104/112 (92%)
 Strand = Plus / Minus

                                                                          
Query: 114    gtcgtcgcggctgtgcgtgaagaatctgcccaagggcgccgacgagaagcggctgcggga 173
              |||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||
Sbjct: 144854 gtcgtcgcggctgtgcgtgaagaacctgcccaagggcgccgacgaggggcggctgcggga 144795

                                                                  
Query: 174    ggtgttctcgcggaagggcgaggtgacggacgccaaagtcatccgaaccaag 225
              |||||||||||||||||| ||||| || |||||||| |||||||| ||||||
Sbjct: 144794 ggtgttctcgcggaagggggaggtcaccgacgccaaggtcatccgcaccaag 144743



 Score =  109 bits (55), Expect = 7e-21
 Identities = 97/111 (87%)
 Strand = Plus / Minus

                                                                          
Query: 225    ggatggaaagagcaggcatcttgcatttattggtttcagaaccaatgaagaggcagcgga 284
              ||||||||||||||||||  |||||||  ||||||||||||| || || ||||||| |||
Sbjct: 144222 ggatggaaagagcaggcaatttgcattcgttggtttcagaactaacgaggaggcagagga 144163

                                                                 
Query: 285    ggccctcaactatttcaacaatacatacattgacacttctaagatcacctg 335
               || ||||| ||||||||||| |||||||| ||||||| ||||||||||||
Sbjct: 144162 agcactcaagtatttcaacaacacatacatcgacacttgtaagatcacctg 144112



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                          
Query: 341    ttgctcggaagattggtgaccctgatgctcctcgcccttggagtcgccattctttaaaaa 400
              ||||||| ||||||||||| ||||| ||||||||||||||||| || ||||||||||| |
Sbjct: 143942 ttgctcgtaagattggtgatcctgaagctcctcgcccttggagccgtcattctttaaaga 143883

                            
Query: 401    agccagaatataat 414
              |||| |||||||||
Sbjct: 143882 agcctgaatataat 143869

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  159 bits (80), Expect = 9e-36
 Identities = 104/112 (92%)
 Strand = Plus / Minus

                                                                            
Query: 114      gtcgtcgcggctgtgcgtgaagaatctgcccaagggcgccgacgagaagcggctgcggga 173
                |||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||
Sbjct: 31047481 gtcgtcgcggctgtgcgtgaagaacctgcccaagggcgccgacgaggggcggctgcggga 31047422

                                                                    
Query: 174      ggtgttctcgcggaagggcgaggtgacggacgccaaagtcatccgaaccaag 225
                |||||||||||||||||| ||||| || |||||||| |||||||| ||||||
Sbjct: 31047421 ggtgttctcgcggaagggggaggtcaccgacgccaaggtcatccgcaccaag 31047370



 Score =  109 bits (55), Expect = 7e-21
 Identities = 97/111 (87%)
 Strand = Plus / Minus

                                                                            
Query: 225      ggatggaaagagcaggcatcttgcatttattggtttcagaaccaatgaagaggcagcgga 284
                ||||||||||||||||||  |||||||  ||||||||||||| || || ||||||| |||
Sbjct: 31046849 ggatggaaagagcaggcaatttgcattcgttggtttcagaactaacgaggaggcagagga 31046790

                                                                   
Query: 285      ggccctcaactatttcaacaatacatacattgacacttctaagatcacctg 335
                 || ||||| ||||||||||| |||||||| ||||||| ||||||||||||
Sbjct: 31046789 agcactcaagtatttcaacaacacatacatcgacacttgtaagatcacctg 31046739



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                            
Query: 341      ttgctcggaagattggtgaccctgatgctcctcgcccttggagtcgccattctttaaaaa 400
                ||||||| ||||||||||| ||||| ||||||||||||||||| || ||||||||||| |
Sbjct: 31046569 ttgctcgtaagattggtgatcctgaagctcctcgcccttggagccgtcattctttaaaga 31046510

                              
Query: 401      agccagaatataat 414
                |||| |||||||||
Sbjct: 31046509 agcctgaatataat 31046496

>gb|DQ186528.1| Uncultured alveolate clone RA001219.16 18S ribosomal RNA gene,
           complete sequence
          Length = 1696

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 245 ttgcatttattggtttcagaaccaat 270
           ||||||||||||| ||||||||||||
Sbjct: 110 ttgcatttattggattcagaaccaat 135

>gb|AF067607.3| Caenorhabditis elegans cosmid C18H7, complete sequence
          Length = 40504

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 121   cggctgtgcgtgaagaatctgccca 145
             ||||||||| |||||||||||||||
Sbjct: 38638 cggctgtgcctgaagaatctgccca 38614

>gb|AF045635.1| Caenorhabditis elegans cosmid C05G6, complete sequence
          Length = 15075

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 121 cggctgtgcgtgaagaatctgccca 145
           ||||||||| |||||||||||||||
Sbjct: 234 cggctgtgcctgaagaatctgccca 210

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 150     cgccgacgagaagcggctgcg 170
               |||||||||||||||||||||
Sbjct: 1430731 cgccgacgagaagcggctgcg 1430711

>ref|NM_067558.2| Caenorhabditis elegans C18H7.1 (C18H7.1) mRNA, complete cds
          Length = 1433

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 121 cggctgtgcgtgaagaatctgccca 145
           ||||||||| |||||||||||||||
Sbjct: 508 cggctgtgcctgaagaatctgccca 484

>emb|CR847549.21| Zebrafish DNA sequence from clone CH211-260H7 in linkage group 8,
            complete sequence
          Length = 80961

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 301  aacaatacatacattgacact 321
            |||||||||||||||||||||
Sbjct: 5804 aacaatacatacattgacact 5824

>gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence
          Length = 204120

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    ccccgccgcagcagcacggg 93
             ||||||||||||||||||||
Sbjct: 87599 ccccgccgcagcagcacggg 87580

>emb|BX572596.1| Rhodopseudomonas palustris CGA009 complete genome; segment 4/16
          Length = 348942

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 151    gccgacgagaagcggctgcg 170
              ||||||||||||||||||||
Sbjct: 320180 gccgacgagaagcggctgcg 320161

>gb|CP000136.1| Rhizobium etli CFN 42 plasmid p42c, complete sequence
          Length = 250948

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 150    cgccgacgagaagcggctgc 169
              ||||||||||||||||||||
Sbjct: 133331 cgccgacgagaagcggctgc 133350

>ref|NM_136467.2| Drosophila melanogaster CG12042-RA (CG12042), mRNA
          Length = 1789

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 372 tcgcccttggagtcgccattcttt 395
           ||||||||||||||||||| ||||
Sbjct: 404 tcgcccttggagtcgccatccttt 381

>gb|AY069420.1| Drosophila melanogaster LD13436 full length cDNA
          Length = 1800

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 372 tcgcccttggagtcgccattcttt 395
           ||||||||||||||||||| ||||
Sbjct: 404 tcgcccttggagtcgccatccttt 381

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 153     cgacgagaagcggctgcgggaggt 176
               |||||||| |||||||||||||||
Sbjct: 1483739 cgacgagacgcggctgcgggaggt 1483762

>gb|AC093046.1| Drosophila melanogaster, chromosome 2R, region 43D-43E, BAC clone
             BACR29D02, complete sequence
          Length = 158372

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 372   tcgcccttggagtcgccattcttt 395
             ||||||||||||||||||| ||||
Sbjct: 89296 tcgcccttggagtcgccatccttt 89319

>gb|AC008259.4|AC008259 Drosophila melanogaster, chromosome 2R, region 43D-43D, BAC clone
              BACR04H12, complete sequence
          Length = 175285

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 372    tcgcccttggagtcgccattcttt 395
              ||||||||||||||||||| ||||
Sbjct: 161813 tcgcccttggagtcgccatccttt 161836

>ref|XM_623625.1| PREDICTED: Apis mellifera similar to nuclear hormone receptor
           (LOC551232), mRNA
          Length = 2142

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  cgcccccgccgcagcagcac 90
           ||||||||||||||||||||
Sbjct: 734 cgcccccgccgcagcagcac 753

>ref|XM_623984.1| PREDICTED: Apis mellifera similar to nuclear hormone receptor
           (LOC551592), mRNA
          Length = 2142

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  cgcccccgccgcagcagcac 90
           ||||||||||||||||||||
Sbjct: 734 cgcccccgccgcagcagcac 753

>ref|XM_221382.3| PREDICTED: Rattus norvegicus similar to mKIAA0226 protein (predicted)
            (LOC303885), mRNA
          Length = 3672

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 158  agaagcggctgcgggaggtg 177
            ||||||||||||||||||||
Sbjct: 1160 agaagcggctgcgggaggtg 1141

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 151     gccgacgagaagcggctgcg 170
               ||||||||||||||||||||
Sbjct: 1057620 gccgacgagaagcggctgcg 1057601

>emb|BX323067.11| Zebrafish DNA sequence from clone CH211-277B21 in linkage group 24,
              complete sequence
          Length = 152092

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 235    agcaggcatcttgcatttat 254
              ||||||||||||||||||||
Sbjct: 123867 agcaggcatcttgcatttat 123886

>gb|AY108230.1| Zea mays PCO120704 mRNA sequence
          Length = 389

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 71  cgcccccgccgcagcagcac 90
           ||||||||||||||||||||
Sbjct: 272 cgcccccgccgcagcagcac 253

>gb|AE003840.3| Drosophila melanogaster chromosome 2R, section 10 of 73 of the complete
              sequence
          Length = 272100

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 372    tcgcccttggagtcgccattcttt 395
              ||||||||||||||||||| ||||
Sbjct: 152217 tcgcccttggagtcgccatccttt 152240

>gb|AC005447.1|AC005447 Drosophila melanogaster, chromosome 2R, region 43E5-43E10, P1 clone
             DS03503, complete sequence
          Length = 77907

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 372   tcgcccttggagtcgccattcttt 395
             ||||||||||||||||||| ||||
Sbjct: 66465 tcgcccttggagtcgccatccttt 66488


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,143,460
Number of Sequences: 3902068
Number of extensions: 3143460
Number of successful extensions: 63897
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63641
Number of HSP's gapped (non-prelim): 256
length of query: 415
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 393
effective length of database: 17,147,199,772
effective search space: 6738849510396
effective search space used: 6738849510396
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)