Clone Information

BLAST Search Result

Clone Name	bastl16c02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor	37	0.015
2	CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor	33	0.22
3	CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)	33	0.29
4	COFA1_MOUSE (O35206) Collagen alpha-1(XV) chain precursor [Conta...	32	0.49
5	CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor	32	0.49
6	CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor	32	0.64
7	CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor	32	0.83
8	K0220_HUMAN (Q92617) Protein KIAA0220 (Fragment)	31	1.1
9	CO9A3_CHICK (P32017) Collagen alpha-3(IX) chain precursor	31	1.1
10	CO4A5_CANFA (Q28247) Collagen alpha-5(IV) chain precursor	31	1.1
11	CO8A1_HUMAN (P27658) Collagen alpha-1(VIII) chain precursor (End...	31	1.1
12	US10_EHV4 (P18349) 28 kDa protein (ORF3)	31	1.4
13	CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodp...	30	1.9
14	CO4A2_HUMAN (P08572) Collagen alpha-2(IV) chain precursor	30	1.9
15	CO4A1_MOUSE (P02463) Collagen alpha-1(IV) chain precursor	30	1.9
16	CO4A1_HUMAN (P02462) Collagen alpha-1(IV) chain precursor	30	1.9
17	CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor	30	1.9
18	COL34_CAEEL (P34687) Cuticle collagen 34 (Abnormal ray morpholog...	30	2.4
19	BSN_MOUSE (O88737) Bassoon protein	30	2.4
20	CO8A1_RABIT (P14282) Collagen alpha-1(VIII) chain precursor (End...	30	2.4
21	CO8A1_MOUSE (Q00780) Collagen alpha-1(VIII) chain precursor	30	3.2
22	CO4A2_MOUSE (P08122) Collagen alpha-2(IV) chain precursor	30	3.2
23	SFTPA_MACMU (Q9TUC5) Pulmonary surfactant-associated protein A (...	30	3.2
24	LTBP2_BOVIN (Q28019) Latent transforming growth factor beta-bind...	30	3.2
25	DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-re...	30	3.2
26	CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor	30	3.2
27	GUNB_FUSOX (P46236) Putative endoglucanase type B precursor (EC ...	30	3.2
28	MAVS_MOUSE (Q8VCF0) Mitochondrial antiviral signaling protein (I...	29	4.1
29	COL1_CAEEL (P08124) Cuticle collagen 1 precursor (Protein squat-...	29	4.1
30	COEA1_MOUSE (Q80X19) Collagen alpha-1(XIV) chain precursor	29	4.1
31	CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor	29	4.1
32	CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor	29	4.1
33	RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats pro...	29	5.4
34	FRAT1_HUMAN (Q92837) Proto-oncogene FRAT1 (Frequently rearranged...	29	5.4
35	ADA11_MOUSE (Q9R1V4) ADAM 11 precursor (A disintegrin and metall...	29	5.4
36	SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic inos...	29	5.4
37	DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-re...	29	5.4
38	COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor	29	5.4
39	COBA1_BOVIN (Q28083) Collagen alpha-1(XI) chain precursor (Fragm...	29	5.4
40	CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor	29	5.4
41	CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor	29	5.4
42	DNAE2_BRUSU (Q8G381) Error-prone DNA polymerase (EC 2.7.7.7)	29	5.4
43	DNAE2_BRUME (Q8YEK2) Error-prone DNA polymerase (EC 2.7.7.7)	29	5.4
44	DNAE2_BRUAB (Q57FU7) Error-prone DNA polymerase (EC 2.7.7.7)	29	5.4
45	CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor	29	5.4
46	TIF1B_MOUSE (Q62318) Transcription intermediary factor 1-beta (T...	29	5.4
47	MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1	28	7.1
48	YDEQ_BACSU (P96674) Putative NAD(P)H oxidoreductase ydeQ (EC 1.6...	28	7.1
49	CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor	28	7.1
50	CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor	28	7.1
51	AP2_ARATH (P47927) Floral homeotic protein APETALA2	28	7.1
52	EMID2_HUMAN (Q96A83) Collagen alpha-1(XXVI) chain precursor (EMI...	28	7.1
53	COAT_PLRV (P10470) Coat protein	28	7.1
54	MAGD1_PIG (Q6ITT4) Melanoma-associated antigen D1 (MAGE-D1 antigen)	28	7.1
55	MAGD1_HUMAN (Q9Y5V3) Melanoma-associated antigen D1 (MAGE-D1 ant...	28	7.1
56	COHA1_CHICK (Q90584) Collagen alpha-1(XVII) chain (Bullous pemph...	28	7.1
57	OC17_CHICK (Q9PRS8) Ovocleidin-17 (OC-17)	28	7.1
58	BSN_RAT (O88778) Bassoon protein	28	7.1
59	SFTA1_HUMAN (Q8IWL2) Pulmonary surfactant-associated protein A1 ...	28	7.1
60	CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)	28	7.1
61	ZN694_HUMAN (Q63HK3) Zinc finger protein 694	28	9.2
62	IF2_MYCTU (P65131) Translation initiation factor IF-2	28	9.2
63	IF2_MYCBO (P65132) Translation initiation factor IF-2	28	9.2
64	YHS4_CAEEL (O18303) Hypothetical protein ZK849.4 in chromosome I	28	9.2
65	OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)	28	9.2
66	RLPA_TREPA (O83958) RlpA-like protein precursor	28	9.2
67	COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor	28	9.2
68	DPO3B_MYCPA (Q9L7L6) DNA polymerase III beta subunit (EC 2.7.7.7)	28	9.2

>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor|
          Length = 1745

 Score = 37.4 bits (85), Expect = 0.015
 Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = -1

Query: 338 FHGPPGAHRTPRDVRCSSGHWTLPPAEP-FPGLAGR*AEKITLPEAPAGVSGLPNVAVNR 162
           F GPPGA   P+ V   SG    PP  P FPG  G        P  PAG+ G+P +   R
Sbjct: 390 FEGPPGAPG-PQGVVGPSG----PPGPPGFPGDPG--------PPGPAGLPGIPGIDGIR 436

Query: 161 HIPAREILTRFPFGG 117
             P   I+  F F G
Sbjct: 437 GPPGTVIMMPFQFAG 451

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>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor|
          Length = 1364

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 24/57 (42%), Positives = 27/57 (47%)
 Frame = -1

Query: 350 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLP 180
           GP   +GPPG    P   R   G    P A  FPG AGR     T P  P+G+SG P
Sbjct: 761 GPSGPNGPPG----PAGSRGDGGP---PGATGFPGAAGR-----TGPPGPSGISGPP 805

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>CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)|
          Length = 1027

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = -1

Query: 350 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEK----ITLPEAPAGVSG 186
           GPP   GP GA R P   R   G   L  A+  PG AG+  E+     T P  PAG  G
Sbjct: 451 GPPGAAGPTGA-RGPPGPRGQQGFQGLAGAQGTPGEAGKTGERGAVGATGPSGPAGPGG 508

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>COFA1_MOUSE (O35206) Collagen alpha-1(XV) chain precursor [Contains: Endostatin|
            (Endostatin-XV)]
          Length = 1367

 Score = 32.3 bits (72), Expect = 0.49
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 269  PPAEP-FPGLAGR*AEKITLPEAPAGVSGLP 180
            PP  P +PGL G+  E +  P+ P G+ GLP
Sbjct: 1033 PPGLPGYPGLVGQKGEAVVGPQGPPGIPGLP 1063

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>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 32.3 bits (72), Expect = 0.49
 Identities = 23/57 (40%), Positives = 27/57 (47%)
 Frame = -1

Query: 350 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLP 180
           GP   +GPPG    P   R   G    P A  FPG AGR     T P  P+G++G P
Sbjct: 763 GPSGPNGPPG----PAGSRGDGGP---PGATGFPGAAGR-----TGPPGPSGITGPP 807

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>CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor|
          Length = 1759

 Score = 32.0 bits (71), Expect = 0.64
 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = -1

Query: 350 GPPDFHGP---PGAHRTPRDVRCS--SGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSG 186
           GP   HG    PGA   PR       SG   LP    +PG+ G   E +   E PAG+ G
Sbjct: 564 GPNGDHGDCGMPGAPGKPRSAGSDGLSGSPGLPGIPGYPGMKGEAGEIVGPMENPAGIPG 623

Query: 185 L 183
           L
Sbjct: 624 L 624

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>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor|
          Length = 1763

 Score = 31.6 bits (70), Expect = 0.83
 Identities = 37/117 (31%), Positives = 47/117 (40%), Gaps = 10/117 (8%)
 Frame = -1

Query: 374  YDRA*TVLGPPDFHGPPGAHRTPR-----DVRCSSGHWTLPPAEPFPGLAGR*AEK-ITL 213
            Y  A  + G P   G PGA   P        R + G    P     PGL G   E  +  
Sbjct: 1304 YAGAAGIKGEPGLPGIPGAKGEPGLSGIPGKRGNDGIPGKPGPAGLPGLPGMKGESGLPG 1363

Query: 212  PEAPAGVSGLPNVAVNRHI---PAREILTRFPFGGCA*SRYLPGLPRPLG-SAYPCA 54
            P+ PAG+ GLP +     +   P ++  T FP         +PGLP   G S YP A
Sbjct: 1364 PQGPAGLPGLPGLKGEPGLPGFPGQKGETGFPG-----QPGIPGLPGMKGDSGYPGA 1415



 Score = 29.6 bits (65), Expect = 3.2
 Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 13/102 (12%)
 Frame = -1

Query: 350  GPPDFHGPPGAHRTPRDVRCSSGHWTLP-----PAEP-------FPGLAGR*AEKITLPE 207
            G P   G PG    PR ++  +G    P     P  P        PGL G+  + IT P+
Sbjct: 1220 GLPGLEGQPG----PRGMKGEAGLPGAPGRDGLPGLPGMKGEAGLPGLPGQPGKSITGPK 1275

Query: 206  APAGVSGLPNVAVNRHIPAREILTRFP-FGGCA*SRYLPGLP 84
              AG+ GLP       +P  +     P + G A  +  PGLP
Sbjct: 1276 GNAGLPGLPGKDGLPGLPGLKGEPGKPGYAGAAGIKGEPGLP 1317



 Score = 28.5 bits (62), Expect = 7.1
 Identities = 31/101 (30%), Positives = 36/101 (35%), Gaps = 2/101 (1%)
 Frame = -1

Query: 356 VLGPPDFHGPPGA--HRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGL 183
           V GPP   GPPGA     PR V            +  PGL G+        +   G+ GL
Sbjct: 434 VQGPPGLAGPPGAKGEPGPRGV----------DGQSIPGLPGK--------DGRPGLDGL 475

Query: 182 PNVAVNRHIPAREILTRFPFGGCA*SRYLPGLPRPLGSAYP 60
           P       +P      R P G       LPG P P G   P
Sbjct: 476 PGRKGEMGLPG----VRGPPGDSL--NGLPGPPGPRGPQGP 510



 Score = 28.1 bits (61), Expect = 9.2
 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = -1

Query: 350 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEA-PAGVSGLPNV 174
           G P   GP G    P  V  +    T+   E  PG+ G   EK    EA P G  G P V
Sbjct: 227 GDPGEQGPRGPQGPPGPVPSTGAKGTIIGPEGAPGMKG---EKGDPGEAGPRGFPGTPGV 283

Query: 173 AVNRHIP 153
           A    +P
Sbjct: 284 AGQPGLP 290

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>K0220_HUMAN (Q92617) Protein KIAA0220 (Fragment)|
          Length = 884

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = -2

Query: 217 LFPRPPPASPDFLTSPSTATSRLGKS*----PDSLSGDARDRAICRGYPVP*DRLTHVQV 50
           L P PP A  +  T P    + L  S     P S   + + RA C  +P+P     +++ 
Sbjct: 158 LTPLPPSADDNLKTPPECLLTPLPPSALPSAPPSADDNLKTRAECLLHPLPPSADDNLKT 217

Query: 49  PFTWNLSPLRPS 14
           P    L+PL PS
Sbjct: 218 PSERQLTPLPPS 229

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>CO9A3_CHICK (P32017) Collagen alpha-3(IX) chain precursor|
          Length = 675

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 33/95 (34%), Positives = 36/95 (37%)
 Frame = -1

Query: 350 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLPNVA 171
           GPP  +GPPG                L PA P PG AG+    +  P  P G SGLP   
Sbjct: 88  GPPGPNGPPG------------DRGALGPAGP-PGPAGK---GLPGPPGPPGPSGLPGGN 131

Query: 170 VNRHIPAREILTRFPFGGCA*SRYLPGLPRPLGSA 66
             R  P    L  FP          PG P P G A
Sbjct: 132 GFRGPPGPSGLPGFPGP--------PGPPGPPGLA 158

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>CO4A5_CANFA (Q28247) Collagen alpha-5(IV) chain precursor|
          Length = 1691

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 34/107 (31%), Positives = 42/107 (39%), Gaps = 18/107 (16%)
 Frame = -1

Query: 350  GPPDFHGPPGAHRT--------PRDVRCSSGHWTLPPAEPFPGLAGR*AEK-------IT 216
            G P   GPPG   +        P+ V+ S G   +P     PGL G+  EK       I 
Sbjct: 1015 GKPGLTGPPGLKGSIGDMGFPGPQGVKGSPGPPGVPGQPGSPGLPGQKGEKGDPGVSGIG 1074

Query: 215  LP--EAPAGVSGLPNVAVNRHIPAREILTRFP-FGGCA*SRYLPGLP 84
            LP    P G +GLP    N  I      T  P   G   ++  PGLP
Sbjct: 1075 LPGLPGPKGEAGLPGYPGNPGIKGSMGDTGLPGLPGTPGAKGQPGLP 1121



 Score = 29.6 bits (65), Expect = 3.2
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -1

Query: 350 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEP 255
           GPP   GPPG H +P D  C +G    PP  P
Sbjct: 435 GPP---GPPGPHISPSDEICETG----PPGPP 459

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>CO8A1_HUMAN (P27658) Collagen alpha-1(VIII) chain precursor (Endothelial|
           collagen)
          Length = 744

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 35/111 (31%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
 Frame = -1

Query: 383 GYEYDRA*TVLGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPE- 207
           G+    A  V GPP  HGPPG    P   +        P    FPG  G   +     E 
Sbjct: 244 GFGMPGAPGVKGPPGMHGPPGPVGLPGVGK--------PGVTGFPGPQGPLGKPGAPGEP 295

Query: 206 APAGVSGLPNVAVNRHI-----PAREILTRFP-FGGCA*SRYLPGLPRPLG 72
            P G  G+P V     I     P ++ +   P F G    + LPGLP P G
Sbjct: 296 GPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPG 346

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>US10_EHV4 (P18349) 28 kDa protein (ORF3)|
          Length = 259

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +3

Query: 159 VAVDGDVRKSGDAGGGLG 212
           +AVDGDVR  GD GGG G
Sbjct: 40  MAVDGDVRTGGDCGGGEG 57

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>CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodpasture antigen)|
          Length = 1670

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 31/108 (28%), Positives = 38/108 (35%), Gaps = 14/108 (12%)
 Frame = -1

Query: 353 LGPPDFHGPPGAHRT--------------PRDVRCSSGHWTLPPAEPFPGLAGR*AEKIT 216
           +GPP F GP   + T              PR  R   G     P+ P PG+ G       
Sbjct: 335 IGPPGFRGPTEYYDTYQEKGDEGTPGPPGPRGARGPQG-----PSGP-PGVPGSPGSSRP 388

Query: 215 LPEAPAGVSGLPNVAVNRHIPAREILTRFPFGGCA*SRYLPGLPRPLG 72
                 G  GL      R  P ++ +      GCA S  LPG P P G
Sbjct: 389 GLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPG 436

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>CO4A2_HUMAN (P08572) Collagen alpha-2(IV) chain precursor|
          Length = 1712

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 35/124 (28%), Positives = 42/124 (33%), Gaps = 27/124 (21%)
 Frame = -1

Query: 350 GPPDFHGPPGAHRTPRDVRCSSG---------HWTLPPA-----EPFPGLAGR*AEKITL 213
           GPP F GPPG   TP  + C +             + P      +  PGL G        
Sbjct: 642 GPPGFLGPPGPAGTPGQIDCDTDVKRAVGGDRQEAIQPGCIAGPKGLPGLPG-------- 693

Query: 212 PEAPAGVSGLPNV---------AVNRHIPAREILTRFP----FGGCA*SRYLPGLPRPLG 72
           P  P G  GL  +            R +P       FP    F G   S+   GLP P G
Sbjct: 694 PPGPTGAKGLRGIPGFAGADGGPGPRGLPGDAGREGFPGPPGFIGPRGSKGAVGLPGPDG 753

Query: 71  SAYP 60
           S  P
Sbjct: 754 SPGP 757

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>CO4A1_MOUSE (P02463) Collagen alpha-1(IV) chain precursor|
          Length = 1669

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 21/67 (31%), Positives = 28/67 (41%)
 Frame = -1

Query: 353 LGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLPNV 174
           +GPP   GPPG    P     SSG   +   + FPG  G     +  P+   G  GLP +
Sbjct: 801 IGPPGAMGPPGGEGPPG----SSGPPGIKGEKGFPGFPGL---DMPGPKGDKGSQGLPGL 853

Query: 173 AVNRHIP 153
                +P
Sbjct: 854 TGQSGLP 860

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>CO4A1_HUMAN (P02462) Collagen alpha-1(IV) chain precursor|
          Length = 1669

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 20/67 (29%), Positives = 27/67 (40%)
 Frame = -1

Query: 353 LGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLPNV 174
           +GPP   GPPG    P      SG   +   + FPG  G     +  P+   G  GLP +
Sbjct: 801 IGPPGARGPPGGQGPPG----LSGPPGIKGEKGFPGFPGL---DMPGPKGDKGAQGLPGI 853

Query: 173 AVNRHIP 153
                +P
Sbjct: 854 TGQSGLP 860

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>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor|
          Length = 1690

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 30/94 (31%), Positives = 35/94 (37%), Gaps = 1/94 (1%)
 Frame = -1

Query: 350  GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITL-PEAPAGVSGLPNV 174
            G P   GPPG H   R      G   LP     PG  G   +   + P  PAG+ GLP  
Sbjct: 816  GFPGVPGPPG-HSCERGAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGLPG- 873

Query: 173  AVNRHIPAREILTRFPFGGCA*SRYLPGLPRPLG 72
                 +P R         G      LPG+P P G
Sbjct: 874  -----LPGRP--------GAHGPPGLPGIPGPFG 894



 Score = 30.4 bits (67), Expect = 1.9
 Identities = 33/113 (29%), Positives = 38/113 (33%), Gaps = 20/113 (17%)
 Frame = -1

Query: 350  GPPDFHGPPGAHRTP-----RDVRCSSGHWTLP--------PAEP-------FPGLAGR* 231
            GPP F GPPG    P       +  S GH   P        P  P        PG  G  
Sbjct: 677  GPPGFDGPPGPKGFPGPQGAPGLSGSDGHKGRPGTPGTAEIPGPPGFRGDMGDPGFGG-- 734

Query: 230  AEKITLPEAPAGVSGLPNVAVNRHIPAREILTRFPFGGCA*SRYLPGLPRPLG 72
             EK + P  P G  G P V   + IP           G      +PG+  P G
Sbjct: 735  -EKGSSPVGPPGPPGSPGVNGQKGIPGDPAFGHLGPPGKRGLSGVPGIKGPRG 786



 Score = 30.0 bits (66), Expect = 2.4
 Identities = 31/101 (30%), Positives = 36/101 (35%), Gaps = 4/101 (3%)
 Frame = -1

Query: 350  GPPDFHGPPG----AHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGL 183
            GPP   GPPG      R P+D+             P PG  G   +    P+ P G  G 
Sbjct: 1233 GPPGSSGPPGPAGATGRAPKDI-------------PDPGPPG--DQGPPGPDGPRGAPGP 1277

Query: 182  PNVAVNRHIPAREILTRFPFGGCA*SRYLPGLPRPLGSAYP 60
            P       +P    L R   G C     LPG P P G   P
Sbjct: 1278 PG------LPGSVDLLRGEPGDCG----LPGPPGPPGPPGP 1308



 Score = 29.6 bits (65), Expect = 3.2
 Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
 Frame = -1

Query: 350 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEK---ITLPEAPAGVSGLP 180
           GPP   G PG +    DV         PP  P  GL GR  E    +  P  P G  GLP
Sbjct: 367 GPPGDPGFPGRYGETGDVG--------PPGPP--GLLGRPGEACAGMIGPPGPQGFPGLP 416

Query: 179 NVAVNRHIPAR 147
            +     IP R
Sbjct: 417 GLPGEAGIPGR 427

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>COL34_CAEEL (P34687) Cuticle collagen 34 (Abnormal ray morphology protein 4)|
          Length = 299

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = -1

Query: 350 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPF-PGLAGR*AEKITLPEAPAGVSGLP 180
           GPP   G PGA  TP +    +    L P EP  PG AG        P+ P G  G P
Sbjct: 187 GPPGPPGAPGAPGTPGEPGVPAQSEPLIPGEPGPPGEAG--------PQGPPGSPGQP 236

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>BSN_MOUSE (O88737) Bassoon protein|
          Length = 3941

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 24/86 (27%), Positives = 31/86 (36%)
 Frame = -1

Query: 335  HGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLPNVAVNRHI 156
            H PPG  R P  V    G           G AG       LPE PAG   L  +     +
Sbjct: 1856 HAPPGT-RKPHTVVVQMGE----------GTAG--TVTTLLPEEPAGALDLTGMRPESQL 1902

Query: 155  PAREILTRFPFGGCA*SRYLPGLPRP 78
               +++ +FPFG      + P    P
Sbjct: 1903 ACCDMVYKFPFGSSCTGTFHPAPSAP 1928

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>CO8A1_RABIT (P14282) Collagen alpha-1(VIII) chain precursor (Endothelial|
           collagen)
          Length = 744

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 33/104 (31%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
 Frame = -1

Query: 350 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEK----ITLPEAPAGV--- 192
           GPP  HGPPG    P   +        P    FPG  G   +        P+ P GV   
Sbjct: 255 GPPGMHGPPGPVGLPGVGK--------PGVTGFPGPQGPLGKPGPPGEPGPQGPIGVPGV 306

Query: 191 ---SGLPNVAVNRHIPAREILTRFP-FGGCA*SRYLPGLPRPLG 72
               GLP V      P ++ +   P F G    + LPGLP P G
Sbjct: 307 QGPPGLPGVGK----PGQDGIPGQPGFPGGKGEQGLPGLPGPPG 346

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>CO8A1_MOUSE (Q00780) Collagen alpha-1(VIII) chain precursor|
          Length = 743

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 32/102 (31%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
 Frame = -1

Query: 350 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPE-APAGVSGLPNV 174
           GPP  HGPPG    P   +        P    FPG  G   +     E  P G+ G+P V
Sbjct: 255 GPPGMHGPPGPVGLPGVGK--------PGVTGFPGPQGPLGKPGPPGEPGPQGLIGVPGV 306

Query: 173 -------AVNRHIPAREILTRFP-FGGCA*SRYLPGLPRPLG 72
                   V +  P ++ +   P F G    + LPGLP P G
Sbjct: 307 QGPPGMPGVGK--PGQDGIPGQPGFPGGKGEQGLPGLPGPPG 346

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>CO4A2_MOUSE (P08122) Collagen alpha-2(IV) chain precursor|
          Length = 1707

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 350 GPPDFHGPPGAHRTPRDVRCSSG 282
           GPP F GPPG   TP    C +G
Sbjct: 637 GPPGFPGPPGPPGTPGQRDCDTG 659

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>SFTPA_MACMU (Q9TUC5) Pulmonary surfactant-associated protein A (SP-A) (PSP-A)|
           (PSAP) (Fragment)
          Length = 165

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 19/51 (37%), Positives = 21/51 (41%)
 Frame = -1

Query: 332 GPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLP 180
           GPPG    P D+ C  G+  LP A   PG  G   E         G  GLP
Sbjct: 7   GPPGPMGPPGDMPCFPGNDGLPGAPGIPGECGEKGE-----PGERGPPGLP 52

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>LTBP2_BOVIN (Q28019) Latent transforming growth factor beta-binding protein 2|
            precursor (LTBP-2)
          Length = 1842

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 28/83 (33%), Positives = 31/83 (37%), Gaps = 8/83 (9%)
 Frame = -1

Query: 383  GYEYDRA*TVLGPPDFH----GPPGA----HRTPRDVRCSSGHWTLPPAEPFPGLAGR*A 228
            GYEY       GP D H    GP G     +  P D           P   FP  AGR  
Sbjct: 1646 GYEYSP-----GPDDLHYSLYGPDGVPFYNYLGPEDAI---------PEPLFPSTAGRPG 1691

Query: 227  EKITLPEAPAGVSGLPNVAVNRH 159
            ++I LPE P   S L    V  H
Sbjct: 1692 DRIPLPEPPLQPSELQPHYVASH 1714

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>DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1) (mDIA1) (p140mDIA)
          Length = 1255

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 23/76 (30%), Positives = 28/76 (36%)
 Frame = -1

Query: 347 PPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLPNVAV 168
           PP     PG+   P       G    PP  PFPG  G       +P  P G+   P    
Sbjct: 684 PPPPPPLPGSVGVPPPPPLPGGPGLPPPPPPFPGAPG-------IPPPPPGMGVPPPPPF 736

Query: 167 NRHIPAREILTRFPFG 120
              +PA  +L   PFG
Sbjct: 737 GFGVPAAPVL---PFG 749

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>CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor|
          Length = 1685

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 20/57 (35%), Positives = 22/57 (38%)
 Frame = -1

Query: 350  GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLP 180
            G P FHG PG    P            PP  P P L G   +    P+ P G  GLP
Sbjct: 1223 GEPGFHGFPGVQGPPG-----------PPGSPGPALEG--PKGNPGPQGPPGRPGLP 1266

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>GUNB_FUSOX (P46236) Putative endoglucanase type B precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase) (Cellulase)
          Length = 462

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 242 PTLETVQPEVGSSGRKSTARRAVSGAPPAAHENP 343
           P+  T      + G  +TA  +V+ APPAA +NP
Sbjct: 74  PSSTTATKTTATGGSSTTAGGSVTSAPPAASDNP 107

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>MAVS_MOUSE (Q8VCF0) Mitochondrial antiviral signaling protein (Interferon-beta|
           promoter stimulator protein 1) (IPS-1) (Virus-induced
           signaling adapter) (CARD adapter inducing
           interferon-beta) (Cardif)
          Length = 503

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 21/69 (30%), Positives = 28/69 (40%)
 Frame = -1

Query: 251 PGLAGR*AEKITLPEAPAGVSGLPNVAVNRHIPAREILTRFPFGGCA*SRYLPGLPRPLG 72
           PG + R  E + LP+ PA VSG    A   +IP   +            R  P  P+P+ 
Sbjct: 98  PGTSLRSLEPLQLPDFPAAVSGPSAFAPGHNIPDHGL------------RETPSCPKPVQ 145

Query: 71  SAYPCASAV 45
              P  S V
Sbjct: 146 DTQPPESPV 154

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>COL1_CAEEL (P08124) Cuticle collagen 1 precursor (Protein squat-3) (Protein|
           dumpy-15)
          Length = 296

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 23/67 (34%), Positives = 27/67 (40%)
 Frame = -1

Query: 350 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLPNVA 171
           GPP   GPPGA   P +    +G    P  +  PG  G        P  PAG +G P  A
Sbjct: 148 GPPGPPGPPGAPGDPGE----AGTPGRPGTDAAPGSPGPRG-----PPGPAGEAGAPGPA 198

Query: 170 VNRHIPA 150
                PA
Sbjct: 199 GEPGTPA 205

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>COEA1_MOUSE (Q80X19) Collagen alpha-1(XIV) chain precursor|
          Length = 1797

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 36/112 (32%), Positives = 43/112 (38%), Gaps = 5/112 (4%)
 Frame = -1

Query: 359  TVLGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEP-FPGLAGR*AEKITLPEAPAGVSGL 183
            T+ GPP   G PG+  TP +          PP  P FPG AG       +P  P G  GL
Sbjct: 1652 TIQGPPGEPGRPGSPGTPGEQG--------PPGTPGFPGNAG-------VPGTP-GERGL 1695

Query: 182  PNVAVNRHIPAREILTRFPFG----GCA*SRYLPGLPRPLGSAYPCASAVHM 39
              V   +  P   I T+ P G            PG P P GS  P     H+
Sbjct: 1696 TGVKGEKGNPG--IGTQGPRGPPGPAGPSGESRPGSPGPPGSPGPRGPPGHL 1745

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>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 32/106 (30%), Positives = 41/106 (38%), Gaps = 4/106 (3%)
 Frame = -1

Query: 356 VLGPPDFHGPPGAHRTPRD--VRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGL 183
           V GPP   GP GA+  P +   +  +G    P  E  PGL G   E+        G +GL
Sbjct: 676 VQGPPGPQGPRGANGAPGNDGAKGDAGAPGAPGNEGPPGLEGMPGER--------GAAGL 727

Query: 182 PNVAVNRHIPAREILTRFPFG--GCA*SRYLPGLPRPLGSAYPCAS 51
           P    +R  P        P G  G      L GL  P+G   P  +
Sbjct: 728 PGAKGDRGDPG-------PKGADGAPGKDGLRGLTGPIGPPGPAGA 766



 Score = 28.1 bits (61), Expect = 9.2
 Identities = 21/62 (33%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
 Frame = -1

Query: 353  LGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEK----ITLPEAPAGVSG 186
            +GPP   GPPG           +G    P AE  PG  G    K     T P  P G  G
Sbjct: 989  MGPPGLAGPPG----------EAGREGAPGAEGAPGRDGAAGPKGDRGETGPAGPPGAPG 1038

Query: 185  LP 180
             P
Sbjct: 1039 AP 1040

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>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor|
          Length = 1464

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
 Frame = -1

Query: 353  LGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEK----ITLPEAPAGVSG 186
            +GPP   GPPG           SG    P AE  PG  G    K     T P  P G  G
Sbjct: 1000 MGPPGLAGPPG----------ESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPG 1049

Query: 185  LP 180
             P
Sbjct: 1050 AP 1051

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>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-2)
          Length = 1558

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
 Frame = -1

Query: 335  HGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLPNVAVNRHI 156
            H PP AH  P  +   S      PA+P PGL    ++ +  P A    +GL        +
Sbjct: 970  HHPPSAHPPPLQLMPQSQPLPSSPAQP-PGLTQ--SQSLPPPAASHPTTGL------HQV 1020

Query: 155  PAREILTRFPFGGCA*SRYLPGLPRPL-GSAYPCASAVHMEPFSSS 21
            P++    + PF        +PG P P+   + P  S     P SSS
Sbjct: 1021 PSQSPFPQHPF--------VPGGPPPITPPSCPPTSTPPAGPSSSS 1058

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>FRAT1_HUMAN (Q92837) Proto-oncogene FRAT1 (Frequently rearranged in advanced|
           T-cell lymphomas) (Frat-1)
          Length = 279

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -2

Query: 391 PDAVMSTTGRERYSVLRIFMGRRGRTGHRAT--CGALPATGP 272
           P A+  T G     VLR  +G RGR   RA   C A  ATGP
Sbjct: 96  PPALAETVGPAPPGVLRCALGDRGRVRGRAAPYCVAELATGP 137

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>ADA11_MOUSE (Q9R1V4) ADAM 11 precursor (A disintegrin and metalloproteinase|
           domain 11) (Metalloproteinase-like, disintegrin-like,
           and cysteine-rich protein) (MDC)
          Length = 773

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 118 PPKGNRVKISRAGM-WRLTATLGSPETPAGASGRVIFSA*RPANPGNGSAGGRVQWPE 288
           PP G      R  + WR +A +GSPE+P G+          P+     S+GG V+ P+
Sbjct: 19  PPPGLGALGPRGALHWRSSAHVGSPESPEGS------EVTEPSRLVRQSSGGEVRKPQ 70

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>SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1)
          Length = 1574

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 4/102 (3%)
 Frame = -1

Query: 347  PPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLPNVAV 168
            PP    PP   R+P   R   G    PP+   PG+A R   +I  P++P G +   N+  
Sbjct: 1119 PPQRPPPPSGARSPAPARKEFGGVGAPPS---PGVARR---EIEAPKSP-GTARKDNIGR 1171

Query: 167  NRHIPAREILTRFPFGGCA*SRYLPG----LPRPLGSAYPCA 54
            N+  P   +    P G  A    +P     +  P   A  CA
Sbjct: 1172 NQPSPQAGLAGPGPAGYGAARPTIPARAGVISAPQSQARVCA 1213

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>DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1)
          Length = 1248

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 23/76 (30%), Positives = 29/76 (38%)
 Frame = -1

Query: 347 PPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLPNVAV 168
           PP   G  G    P  +    G   +PP  PFPG  G       +P  P G+   P    
Sbjct: 683 PPPLPGEAGMPPPPPPLPGGPG---IPPPPPFPGGPG-------IPPPPPGMGMPPPPPF 732

Query: 167 NRHIPAREILTRFPFG 120
              +PA  +L   PFG
Sbjct: 733 GFGVPAAPVL---PFG 745

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>COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor|
          Length = 1806

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -1

Query: 356 VLGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAG 237
           ++GPP   GP G    P D R   G   LP A+  PG  G
Sbjct: 452 IMGPPGLQGPTGPPGDPGD-RGPPGRPGLPGADGLPGPPG 490

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>COBA1_BOVIN (Q28083) Collagen alpha-1(XI) chain precursor (Fragment)|
          Length = 911

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 29/97 (29%), Positives = 37/97 (38%), Gaps = 2/97 (2%)
 Frame = -1

Query: 356 VLGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLPN 177
           ++GPP   GP G    P + R   G   LP A+  PG  G     + LP    G S    
Sbjct: 219 LMGPPGLQGPTGPPGDPGE-RGPPGRPGLPGADGLPGPPG---TMLVLPFRYGGDSSKGP 274

Query: 176 VAVNRHIPAREIL--TRFPFGGCA*SRYLPGLPRPLG 72
               +   A+ IL   R    G      L G P P+G
Sbjct: 275 TVSAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVG 311

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>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
 Frame = -1

Query: 353  LGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEK----ITLPEAPAGVSG 186
            +GPP   GPPG           SG    P AE  PG  G    K     T P  P G  G
Sbjct: 989  MGPPGLAGPPG----------ESGREGSPGAEGSPGRDGAPGAKGDRGETGPAGPPGAPG 1038

Query: 185  LP 180
             P
Sbjct: 1039 AP 1040



 Score = 28.1 bits (61), Expect = 9.2
 Identities = 25/70 (35%), Positives = 26/70 (37%), Gaps = 10/70 (14%)
 Frame = -1

Query: 350 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFP----------GLAGR*AEKITLPEAP 201
           GP  F GPPG    P      SG    PP  P P          G  GR  E+   P  P
Sbjct: 186 GPQGFQGPPGEPGEPG----GSGPMG-PPGPPGPPGKNGDDGEAGKPGRPGER--GPPGP 238

Query: 200 AGVSGLPNVA 171
            G  GLP  A
Sbjct: 239 QGARGLPGTA 248

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>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
 Frame = -1

Query: 353  LGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEK----ITLPEAPAGVSG 186
            +GPP   GPPG           SG    P AE  PG  G    K     T P  P G  G
Sbjct: 989  MGPPGLAGPPG----------ESGREGSPGAEGSPGRDGAPGAKGDRGETGPAGPPGAPG 1038

Query: 185  LP 180
             P
Sbjct: 1039 AP 1040

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>DNAE2_BRUSU (Q8G381) Error-prone DNA polymerase (EC 2.7.7.7)|
          Length = 1077

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 24/70 (34%), Positives = 28/70 (40%)
 Frame = -1

Query: 347 PPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLPNVAV 168
           PPD   P  A R     + + G   L    P  G  GR AE+I    A AGV  +    V
Sbjct: 131 PPDEDEPDFAARLTEIAQAAPGSVWLALTMPHQGQDGRRAERIARFAAQAGVPLIATNDV 190

Query: 167 NRHIPAREIL 138
             H P R  L
Sbjct: 191 LYHHPDRRPL 200

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>DNAE2_BRUME (Q8YEK2) Error-prone DNA polymerase (EC 2.7.7.7)|
          Length = 1077

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 24/70 (34%), Positives = 28/70 (40%)
 Frame = -1

Query: 347 PPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLPNVAV 168
           PPD   P  A R     + + G   L    P  G  GR AE+I    A AGV  +    V
Sbjct: 131 PPDEDEPDFAARLTEIAQAAPGSVWLALTMPHQGQDGRRAERIARFAAQAGVPLIATNDV 190

Query: 167 NRHIPAREIL 138
             H P R  L
Sbjct: 191 LYHHPDRRPL 200

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>DNAE2_BRUAB (Q57FU7) Error-prone DNA polymerase (EC 2.7.7.7)|
          Length = 1077

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 24/70 (34%), Positives = 28/70 (40%)
 Frame = -1

Query: 347 PPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLPNVAV 168
           PPD   P  A R     + + G   L    P  G  GR AE+I    A AGV  +    V
Sbjct: 131 PPDEDEPDFAARLTEIAQAAPGSVWLALTMPHQGQDGRRAERIARFAAQAGVPLIATNDV 190

Query: 167 NRHIPAREIL 138
             H P R  L
Sbjct: 191 LYHHPDRRPL 200

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>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor|
          Length = 1460

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
 Frame = -1

Query: 353  LGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEK----ITLPEAPAGVSG 186
            +GPP   GPPG           SG    P AE  PG  G    K     T P  P G  G
Sbjct: 996  MGPPGLAGPPG----------ESGREGSPGAEGSPGRDGSPGPKGDRGETGPAGPPGAPG 1045

Query: 185  LP 180
             P
Sbjct: 1046 AP 1047

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>TIF1B_MOUSE (Q62318) Transcription intermediary factor 1-beta (TIF1-beta)|
           (Tripartite motif protein 28) (KRAB-A-interacting
           protein) (KRIP-1)
          Length = 834

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
 Frame = +2

Query: 263 PEVGSSGRKSTARRAVSGAPPAAHENPEDR---VPFT--PGRTHNRIRSP 397
           P  G +  K     A  GAPPAA E PE +   +P T  PG    R+ SP
Sbjct: 546 PLPGMAIVKEEETEAAIGAPPAAPEGPETKPVLMPLTEGPGAEGPRLASP 595

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>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1|
          Length = 2173

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -2

Query: 274  PYLRLNRFQGWQAVKQKR*LFPRPPPASPDFLTSPSTAT 158
            P  R +R Q W AV+    L   P PASP  L  P+ A+
Sbjct: 1832 PKSRPSRNQRWGAVRADESLTAIPEPASPQLLDIPTHAS 1870

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>YDEQ_BACSU (P96674) Putative NAD(P)H oxidoreductase ydeQ (EC 1.6.99.-)|
          Length = 197

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +1

Query: 112 AHPPKGNRVKISRAGMWRLTATLGSPETPAGASGRVIFSA*RPANPGNGSA 264
           AH P GN++K      W    ++GSPE    A G  +FS      P   SA
Sbjct: 91  AHGPGGNKLKGKE---WVTAMSIGSPEHSYQAGGYNLFSISELTKPFQASA 138

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>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +3

Query: 228 CLTACQPWKRFSRR*GPVAGRAPHVARCPVRPR 326
           CL  CQ  +  S R GP   R P   R P  PR
Sbjct: 18  CLATCQSLQMGSVRKGPTGDRGPRGQRGPAGPR 50

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>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -1

Query: 350 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEA-PAGVSG 186
           GPP F G PG   T  +V    G   LP     PG AG   E+ T  E+  AG SG
Sbjct: 556 GPPGFQGLPGPSGTTGEVG-KPGERGLPGEFGLPGPAGPRGERGTPGESGAAGPSG 610

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>AP2_ARATH (P47927) Floral homeotic protein APETALA2|
          Length = 432

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +3

Query: 189 GDAGGGLGKSYLFCLTACQPWKRFSRR*GPVAGRAPHVARCPVRPRRPMKIRRTEYRSR 365
           G    G  +++ F +  CQ         G  AG+A +VA   V P +P+K  R   RSR
Sbjct: 74  GGVASGFPRAHWFGVKFCQS----DLATGSSAGKATNVAAAVVEPAQPLKKSRRGPRSR 128

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>EMID2_HUMAN (Q96A83) Collagen alpha-1(XXVI) chain precursor (EMI|
           domain-containing protein 2) (Emu2 protein) (Emilin and
           multimerin domain-containing protein 2)
          Length = 441

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = -1

Query: 350 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPE 207
           GPP   GPPG   TP     +    T+ P+   PG+ G   EK    E
Sbjct: 314 GPPGPRGPPGPPGTPGSQGLAGERGTVGPSGE-PGVKGEEGEKAATAE 360

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>COAT_PLRV (P10470) Coat protein|
          Length = 208

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 318 RPRRPMKIRRTEYRSRPVVLITASG 392
           R RR   +RR   R +PVV++TASG
Sbjct: 18  RRRRRQSLRRRANRVQPVVMVTASG 42

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>MAGD1_PIG (Q6ITT4) Melanoma-associated antigen D1 (MAGE-D1 antigen)|
          Length = 784

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -1

Query: 350 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFP 249
           GPPD+ GPP     P         W LPP  P P
Sbjct: 400 GPPDWQGPPDWPLPP--------DWPLPPDWPLP 425

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>MAGD1_HUMAN (Q9Y5V3) Melanoma-associated antigen D1 (MAGE-D1 antigen)|
           (Neurotrophin receptor-interacting MAGE homolog) (MAGE
           tumor antigen CCF)
          Length = 778

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -1

Query: 350 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFP 249
           GPPD+ GPP     P         W LPP  P P
Sbjct: 394 GPPDWQGPPDWPLPP--------DWPLPPDWPLP 419

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>COHA1_CHICK (Q90584) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen|
           2) (180 kDa bullous pemphigoid antigen 2) (Fragment)
          Length = 1146

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 3/106 (2%)
 Frame = -1

Query: 356 VLGPPDFHGPPGAHRTPRDVRCSSG--HWTLPPAEP-FPGLAGR*AEKITLPEAPAGVSG 186
           V GPP   GPPG    P+  +   G   +T  P EP  PG +      +T+ + P G  G
Sbjct: 515 VSGPPGPPGPPG----PKGDQGEPGPRGFTGEPGEPGLPGFSSH-GGTVTM-QGPPGPPG 568

Query: 185 LPNVAVNRHIPAREILTRFPFGGCA*SRYLPGLPRPLGSAYPCASA 48
            P    +  +P    +     GG    +  PG P P G   P  S+
Sbjct: 569 PPGPKGDAGVPGAPGIPGTSRGGSRQIQGPPGPPGPPGPPGPGGSS 614

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>OC17_CHICK (Q9PRS8) Ovocleidin-17 (OC-17)|
          Length = 142

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
 Frame = +1

Query: 166 LTATLGSPETPAGASGRVIFSA*RPANP-----GNGSAGGRVQWPEEHRTSRGVRCA 321
           L A+ G   +  GA GRV     RPA        +G+A     W    +  RG RCA
Sbjct: 58  LNASRGGDGSGEGADGRVWIGLHRPAGSRSWRWSDGTAPRFASWHRTAKARRGGRCA 114

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>BSN_RAT (O88778) Bassoon protein|
          Length = 3937

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
 Frame = -1

Query: 326  PGA--HR-TPRDVRCSSGHWTLPPAEPFPGLAGR*AEKIT--LPEAPAGVSGLPNVAVNR 162
            PGA  HR TP ++R  +   T  P      +    A  +T  LPE PAG   L  +    
Sbjct: 1829 PGAEPHRATPAELRAHALPGTRKPHTVVVQMGEGAAGTVTTLLPEEPAGALDLTGMRPES 1888

Query: 161  HIPAREILTRFPFGGCA*SRYLPGLPRP 78
             +   ++  +FPFG      + P    P
Sbjct: 1889 RLACCDMAYKFPFGSSCTGTFHPAPSAP 1916

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>SFTA1_HUMAN (Q8IWL2) Pulmonary surfactant-associated protein A1 precursor|
           (SP-A1) (SP-A) (PSP-A) (PSPA) (Alveolar proteinosis
           protein) (35 kDa pulmonary surfactant-associated
           protein)
          Length = 248

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = -1

Query: 332 GPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLP 180
           GPPG    P ++ C  G+  LP A   PG  G   E         G  GLP
Sbjct: 55  GPPGPMGPPGEMPCPPGNDGLPGAPGIPGECGEKGE-----PGERGPPGLP 100

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>CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)|
          Length = 779

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
 Frame = -1

Query: 353 LGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPE-APAGVSGLP 180
           +GPP   GPPG           SG    P AE  PG  G    K    E  PAG  G P
Sbjct: 562 MGPPGLAGPPG----------ESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGAPGPP 610

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>ZN694_HUMAN (Q63HK3) Zinc finger protein 694|
          Length = 967

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 356 VLGPPDFHGPPGAHRTPRDVRCSSG 282
           ++  P+F GPPG  ++P D    SG
Sbjct: 643 IVQEPEFQGPPGLLQSPNDFEIGSG 667

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>IF2_MYCTU (P65131) Translation initiation factor IF-2|
          Length = 900

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +1

Query: 121 PKGNRVKISRAGMWRLTATLGS-PETPAGASGRVIFSA*RPANPGNGSAGGRVQWPEEHR 297
           P   R   +R G+ R  A+ GS P  P GA G       RP  PG    GGR   P   R
Sbjct: 170 PPAPRPGTARPGVPRPGASPGSMPPRPGGAVGGA-----RPPRPGAPRPGGRPGAPGAGR 224

Query: 298 TSRG 309
           +  G
Sbjct: 225 SDAG 228

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>IF2_MYCBO (P65132) Translation initiation factor IF-2|
          Length = 900

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +1

Query: 121 PKGNRVKISRAGMWRLTATLGS-PETPAGASGRVIFSA*RPANPGNGSAGGRVQWPEEHR 297
           P   R   +R G+ R  A+ GS P  P GA G       RP  PG    GGR   P   R
Sbjct: 170 PPAPRPGTARPGVPRPGASPGSMPPRPGGAVGGA-----RPPRPGAPRPGGRPGAPGAGR 224

Query: 298 TSRG 309
           +  G
Sbjct: 225 SDAG 228

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>YHS4_CAEEL (O18303) Hypothetical protein ZK849.4 in chromosome I|
          Length = 602

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 263 AEPFPGLAGR*AEKITLPEAPAGVSGLPNVAVNRHIPAREILTRF 129
           A P PG   R A  + +P AP G + +   +V+  + AR  + R+
Sbjct: 173 ALPMPGAPERPAVALPMPGAPEGPAAIQQPSVDVKLTARRTIIRY 217

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>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = -1

Query: 347 PPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGL 243
           PP  HGPP     P       G W  PP    P L
Sbjct: 260 PPPGHGPPPPQHQPSPYGGQQGGWAPPPRPYSPQL 294

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>RLPA_TREPA (O83958) RlpA-like protein precursor|
          Length = 318

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
 Frame = -1

Query: 272 LPPAEPFPGLAGR*AEKITLPEAP----AGVSGLPNVAVNRHIPAREILTRFPFGGCA*S 105
           +PP  P        A+    P AP    AG  G+P VA    +PA E      +G    +
Sbjct: 147 VPPTAPTSSAPVMYADPHNPPPAPVGRRAGTPGVPGVANTTDVPASE------YGAPPVA 200

Query: 104 RYLPGLPR---PLGSAYPCASA--VHMEPFSSSA 18
              PG      P G+A P ++A   H +P  SS+
Sbjct: 201 YAAPGSTPSRVPYGTAVPGSAAPNSHAQPVPSSS 234

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>COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor|
          Length = 1804

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -1

Query: 356 VLGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAG 237
           ++GPP   GP G    P D R   G   LP A+  PG  G
Sbjct: 450 LMGPPGLQGPSGLPGDPGD-RGPPGRPGLPGADGLPGPPG 488

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>DPO3B_MYCPA (Q9L7L6) DNA polymerase III beta subunit (EC 2.7.7.7)|
          Length = 399

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
 Frame = +3

Query: 93  RQIARSRASPERESG*DFPSRDVA------VDG-DVRKSGDAGGGLGKSYL 224
           R++  S ASP+ E+    P++ +A      +DG DVR S  AG G+GK  L
Sbjct: 189 RELTWSAASPDIEAAVLVPAKTLAEAARTGIDGSDVRLSLGAGAGVGKDGL 239


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,071,543
Number of Sequences: 219361
Number of extensions: 1743630
Number of successful extensions: 5958
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 5171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5912
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result