ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl16b09 |
|---|---|
| Clone Library Name | barley_pub |
>NOMO3_HUMAN (P69849) Nodal modulator 3 precursor (pM5 protein 3)| Length = 1222 Score = 87.4 bits (215), Expect = 7e-18 Identities = 50/134 (37%), Positives = 78/134 (58%), Gaps = 8/134 (5%) Frame = +2 Query: 2 IPGLYKLRASHPDYEIQMTGSSEVDLRFGNAVVNDVFFVSGYNIHGSVVAQGNPILGVHL 181 +PG Y++ A+HP + ++ S+ V + NA V+GYN+ GSV + G P+ GV Sbjct: 177 LPGDYEILATHPTWALK-EASTTVRVTNSNANAASPLIVAGYNVSGSVRSDGEPMKGVKF 235 Query: 182 YLYSNDVKE---VPCSQGLIDA--PREGAL---CHAVSGADGKFSFRSMPCGSYDLLPYY 337 L+S+ V + + C+ + P++ +L C+ VS DG FSF S+P G Y ++P+Y Sbjct: 236 LLFSSLVTKEDVLGCNVSPVPGFQPQDESLVYLCYTVSREDGSFSFYSLPSGGYTVIPFY 295 Query: 338 RGENTVFDVSPSSL 379 RGE FDV+PS L Sbjct: 296 RGERITFDVAPSRL 309
>NOMO1_HUMAN (Q15155) Nodal modulator 1 precursor (pM5)| Length = 1222 Score = 87.4 bits (215), Expect = 7e-18 Identities = 50/134 (37%), Positives = 78/134 (58%), Gaps = 8/134 (5%) Frame = +2 Query: 2 IPGLYKLRASHPDYEIQMTGSSEVDLRFGNAVVNDVFFVSGYNIHGSVVAQGNPILGVHL 181 +PG Y++ A+HP + ++ S+ V + NA V+GYN+ GSV + G P+ GV Sbjct: 177 LPGDYEILATHPTWALK-EASTTVRVTNSNANAASPLIVAGYNVSGSVRSDGEPMKGVKF 235 Query: 182 YLYSNDVKE---VPCSQGLIDA--PREGAL---CHAVSGADGKFSFRSMPCGSYDLLPYY 337 L+S+ V + + C+ + P++ +L C+ VS DG FSF S+P G Y ++P+Y Sbjct: 236 LLFSSLVTKEDVLGCNVSPVPGFQPQDESLVYLCYTVSREDGSFSFYSLPSGGYTVIPFY 295 Query: 338 RGENTVFDVSPSSL 379 RGE FDV+PS L Sbjct: 296 RGERITFDVAPSRL 309
>NOMO2_HUMAN (Q5JPE7) Nodal modulator 2 precursor (pM5 protein 2)| Length = 1267 Score = 87.4 bits (215), Expect = 7e-18 Identities = 50/134 (37%), Positives = 78/134 (58%), Gaps = 8/134 (5%) Frame = +2 Query: 2 IPGLYKLRASHPDYEIQMTGSSEVDLRFGNAVVNDVFFVSGYNIHGSVVAQGNPILGVHL 181 +PG Y++ A+HP + ++ S+ V + NA V+GYN+ GSV + G P+ GV Sbjct: 177 LPGDYEILATHPTWALK-EASTTVRVTNSNANAASPLIVAGYNVSGSVRSDGEPMKGVKF 235 Query: 182 YLYSNDVKE---VPCSQGLIDA--PREGAL---CHAVSGADGKFSFRSMPCGSYDLLPYY 337 L+S+ V + + C+ + P++ +L C+ VS DG FSF S+P G Y ++P+Y Sbjct: 236 LLFSSLVTKEDVLGCNVSPVPGFQPQDESLVYLCYTVSREDGSFSFYSLPSGGYTVIPFY 295 Query: 338 RGENTVFDVSPSSL 379 RGE FDV+PS L Sbjct: 296 RGERITFDVAPSRL 309
>TRMU_SYNEL (Q8CWM0) Probable tRNA| (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) Length = 369 Score = 32.0 bits (71), Expect = 0.37 Identities = 16/35 (45%), Positives = 24/35 (68%) Frame = +2 Query: 140 SVVAQGNPILGVHLYLYSNDVKEVPCSQGLIDAPR 244 S+ AQG+P++G+ L+L K CS+GL+DA R Sbjct: 23 SLKAQGHPVVGLTLWLMKG--KGQCCSEGLVDAAR 55
>XPO5_MOUSE (Q924C1) Exportin-5 (Ran-binding protein 21)| Length = 1204 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 7/57 (12%) Frame = -2 Query: 287 TSHPHQILHGKEHLPW--VHRSNLASKEPPL-----HHLNINTGELPRLDFPAQLQS 138 T+HP Q L H+ W + R + S++P L +L + L ++ FP++ S Sbjct: 360 TTHPSQFLRSSTHMTWGALFRHEVLSRDPALLAVIPKYLRASMTNLVKMGFPSKTDS 416
>ZN398_HUMAN (Q8TD17) Zinc finger protein 398 (Zinc finger DNA-binding protein| p52/p71) Length = 642 Score = 29.6 bits (65), Expect = 1.8 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 3/88 (3%) Frame = -2 Query: 344 PLCSMATDHSYHRALI*MRTSHPHQILH-GKEHLPWVHRS-NLASKEPPLHHLNINTGEL 171 P C + D + H ALI HQ++H G+ P S + KE L+H ++TGE Sbjct: 486 PQCGI--DFNGHSALI------RHQMIHTGERPYPCTDCSKSFMRKEHLLNHRRLHTGER 537 Query: 170 PRLDFPAQLQSHEYCIQ-IRRKHHLLQH 90 P S +C + RKHHL++H Sbjct: 538 PF--------SCPHCGKSFIRKHHLMKH 557
>DAPF_OCEIH (Q8ENX2) Diaminopimelate epimerase (EC 5.1.1.7) (DAP epimerase)| Length = 286 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/57 (31%), Positives = 31/57 (54%) Frame = +2 Query: 44 EIQMTGSSEVDLRFGNAVVNDVFFVSGYNIHGSVVAQGNPILGVHLYLYSNDVKEVP 214 EI M G+++V VVN+ F V+G + + V+ GNP H + +D+++ P Sbjct: 133 EIPMMGNNDVK------VVNEPFVVAGETQYITAVSMGNP----HGVFFVDDIEKAP 179
>YN03_CAEEL (Q03607) Hypothetical protein T23G5.3| Length = 262 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/28 (53%), Positives = 19/28 (67%) Frame = -2 Query: 287 TSHPHQILHGKEHLPWVHRSNLASKEPP 204 T P+QIL KE++P V R+ L SK PP Sbjct: 116 TPIPNQILTQKENVPIVPRNLLLSKPPP 143
>TRI_THEVO (Q97A95) Tricorn protease (EC 3.4.21.-)| Length = 1030 Score = 28.9 bits (63), Expect = 3.1 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 1/103 (0%) Frame = +2 Query: 59 GSSEVDLRFGNAVVNDVFFVSGYNIHGSVVAQGNPILGVHLYLYSND-VKEVPCSQGLID 235 G+ E+ + G + ++F V + G + GN + L SN VKE ID Sbjct: 353 GTGEMKRKIGP--LGNIFSVKS-SADGKYLVVGNDNFQILLIDVSNGTVKE-------ID 402 Query: 236 APREGALCHAVSGADGKFSFRSMPCGSYDLLPYYRGENTVFDV 364 REG + D +F S P S DL Y + +FD+ Sbjct: 403 QSREGLIVDFAISKDSRFIAYSFPVKSSDLASYVQRHIKLFDM 445
>ORB2_DROME (Q9VSR3) Probable RNA-binding protein orb2| Length = 704 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/55 (29%), Positives = 25/55 (45%) Frame = -2 Query: 191 NINTGELPRLDFPAQLQSHEYCIQIRRKHHLLQHFQNASPPLMNLSSEFHNQDEM 27 N+N + P+L Q H+ Q +++ L QH Q SP L L Q ++ Sbjct: 168 NLNLNKPPQLHQQQHQQQHQQHQQHQQQQQLHQHQQQLSPNLSALHHHHQQQQQL 222
>4CL2_ORYSA (Q42982) 4-coumarate--CoA ligase 2 (EC 6.2.1.12) (4CL 2)| (4-coumaroyl-CoA synthase 2) Length = 569 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -2 Query: 221 ASKEPPLHHLNINTGELPRLDFPAQLQSHEYC 126 A E P + + +LP +D P+ L HEYC Sbjct: 16 AVDEAPPEAVTVFRSKLPDIDIPSHLPLHEYC 47
>SL9A9_HUMAN (Q8IVB4) Sodium/hydrogen exchanger 9 (Na(+)/H(+) exchanger 9)| (NHE-9) (Solute carrier family 9 member 9) Length = 645 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Frame = -1 Query: 306 GIDLNENFPSAPDTAWQRAPSLGASIKPCEQGTSFT---SFEYKY 181 G+DL+EN P + Q A +L ++ E F SF++KY Sbjct: 492 GVDLDENLKEDPSSQHQEANNLDKNMTKAESARLFRMWYSFDHKY 536
>THII_HAEI8 (Q4QKG3) Thiamine biosynthesis protein thiI| Length = 485 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = -2 Query: 254 EHLPWVHRSNLASKEP--PLHHLNINTGELPRLDFPAQLQSHEYCIQIRRK 108 + +P +H ++P LHH+ EL D QLQ +C++++RK Sbjct: 68 QRIPGIHHFLEVEEKPFTDLHHIF----ELTLADVAQQLQGKTFCVRVKRK 114
>IRGB_VIBCH (P25543) Iron-regulated virulence regulatory protein irgB| Length = 298 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/57 (28%), Positives = 27/57 (47%) Frame = -2 Query: 290 RTSHPHQILHGKEHLPWVHRSNLASKEPPLHHLNINTGELPRLDFPAQLQSHEYCIQ 120 + +HP +++H PW+ E LHH + LP L+ ++LQS +Q Sbjct: 176 KPTHPRELIHH----PWIDFIACRRAELELHHPEFGSYSLPALE--SRLQSDNLAMQ 226
>GLPK2_STRAW (Q827G1) Glycerol kinase 2 (EC 2.7.1.30) (ATP:glycerol| 3-phosphotransferase 2) (Glycerokinase 2) (GK 2) Length = 507 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 3/29 (10%) Frame = +2 Query: 242 REGALCHAVSGADGKFSFR---SMPCGSY 319 R ALCH + G+DG+ FR +P SY Sbjct: 110 RTSALCHELGGSDGQDRFREQTGLPLASY 138
>SRFAB_BACSU (Q04747) Surfactin synthetase subunit 2| Length = 3587 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Frame = -2 Query: 278 PHQILHGKEHLPWVHRSNLAS--KEPPLHHLNINTGELPRLDFP 153 P LH K+ W + + KE + +++ +GELP LD P Sbjct: 2251 PEPTLHYKDFAVWQNEAEQKERMKEHEAYWMSVLSGELPELDLP 2294 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = -2 Query: 266 LHGKEHLPWVHRSNLASKEPPLHHLNINTGELPRLDFPAQLQ 141 +H K++ W H+ ++ + L++ GELP LD PA + Sbjct: 1212 IHYKDYAVW-HKEQTNYQKDEEYWLDVFKGELPILDLPADFE 1252
>ENG1_YEAST (P53753) Endo-1,3(4)-beta-glucanase 1 precursor (EC 3.2.1.6)| (Endo-1,4-beta-glucanase 1) (Endo-1,3-beta-glucanase 1) (Laminarinase-1) (Daughter specific expression protein 4) Length = 1117 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = +2 Query: 59 GSSEVDLRFGNAVVNDVFFVSGYNIHGSVV 148 GS+ FGN ND F GY IH + V Sbjct: 848 GSTSTQYDFGNTYYNDHHFHYGYIIHAAAV 877
>TLR4_FELCA (P58727) Toll-like receptor 4 precursor (CD284 antigen)| Length = 833 Score = 27.3 bits (59), Expect = 9.1 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 11/103 (10%) Frame = -2 Query: 278 PHQILHGKEHLPWVHRSNLASKEPPLHHL--NINTGELPRLDFPAQLQSHEYCIQIRRKH 105 P++ LH + L +ASKE L H N+++ L R DF + + ++ + Sbjct: 539 PYEPLHSLQTLDCSFNRIVASKEQELRHFPSNLSSLNLTRNDFACVCEHQSFLQWVKDQR 598 Query: 104 HLLQHFQN---ASP------PLMNLSSEFHNQDEMHATCRVQE 3 LL + A P P++N F N ATC+V++ Sbjct: 599 QLLVEVEQMVCAKPLDMQGMPMLN----FRN-----ATCQVRK 632
>KRUP_DROME (P07247) Protein krueppel| Length = 502 Score = 27.3 bits (59), Expect = 9.1 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 22/70 (31%) Frame = -2 Query: 197 HLNINTGELP--------RLDFPAQLQSH------------EYC-IQIRRKHHLLQHFQN 81 HL ++TGE P + QL+SH E C ++ RR+HHL+ H Sbjct: 296 HLRVHTGERPYTCEICDGKFSDSNQLKSHMLVHNGEKPFECERCHMKFRRRHHLMNHKCG 355 Query: 80 -ASPPLMNLS 54 SPP LS Sbjct: 356 IQSPPTPALS 365
>CGEB_BACSU (P42090) Protein cgeB| Length = 317 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%) Frame = -2 Query: 332 MATDHSYHRALI*MRTSHPHQILHGKE--HLPWVHR 231 M T+HSYH L+ + +P+++ KE HLP+ R Sbjct: 135 MGTEHSYHSNLLIIGYPYPNRVQLMKEAVHLPFTVR 170
>HUTH_THEAC (Q9HLI6) Probable histidine ammonia-lyase (EC 4.3.1.3) (Histidase)| Length = 496 Score = 27.3 bits (59), Expect = 9.1 Identities = 22/68 (32%), Positives = 30/68 (44%) Frame = +2 Query: 2 IPGLYKLRASHPDYEIQMTGSSEVDLRFGNAVVNDVFFVSGYNIHGSVVAQGNPILGVHL 181 IP +Y A DY ++ S E++ N + N VSG N HG VA L + L Sbjct: 282 IPQVYGSVADVIDY-VENVLSVEINSATDNPLFNGEEVVSGGNFHGEPVALAADFLAIAL 340 Query: 182 YLYSNDVK 205 N V+ Sbjct: 341 TDLGNMVE 348 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,855,073 Number of Sequences: 219361 Number of extensions: 1236620 Number of successful extensions: 3298 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3212 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3289 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
