Clone Information

BLAST Search Result

Clone Name	bastl16b09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_189191.1\| Oryza sativa (japonica cultivar-group), predic...	325	6e-86
2	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	145	1e-31
3	dbj\|AP003578.1\| Oryza sativa (japonica cultivar-group) genomic D...	145	1e-31
4	dbj\|AP002883.2\| Oryza sativa (japonica cultivar-group) genomic D...	145	1e-31
5	gb\|BT014138.1\| Lycopersicon esculentum clone 133257F, mRNA sequence	58	2e-05
6	gb\|AC102320.6\| Mus musculus chromosome 1, clone RP24-459A11, com...	44	0.33
7	gb\|AC011592.5\| Homo sapiens chromosome 3, clone RP11-42F12, comp...	44	0.33
8	gb\|AC117397.2\| Homo sapiens 3 BAC RP11-92D20 (Roswell Park Cance...	44	0.33
9	gb\|AC131661.4\| Mus musculus BAC clone RP23-251N10 from 1, comple...	44	0.33
10	ref\|XM_650274.1\| Entamoeba histolytica HM-1:IMSS villidin (30.t0...	42	1.3
11	emb\|CR385065.21\| Zebrafish DNA sequence from clone CH211-232F6 i...	42	1.3
12	ref\|XM_939077.1\| PREDICTED: Homo sapiens chromosome 18 open read...	42	1.3
13	ref\|XM_928362.1\| PREDICTED: Homo sapiens chromosome 18 open read...	42	1.3
14	gb\|AC159808.2\| Mus musculus BAC clone RP24-357G23 from chromosom...	42	1.3
15	emb\|BX119907.8\| Zebrafish DNA sequence from clone CH211-208D14 i...	42	1.3
16	dbj\|AP005326.2\| Homo sapiens genomic DNA, chromosome 18 clone:RP...	42	1.3
17	dbj\|AP001496.4\| Homo sapiens genomic DNA, chromosome 18 clone:RP...	42	1.3
18	gb\|AC172877.1\| Brassica rapa subsp. pekinensis clone KBrH042F19,...	42	1.3
19	ref\|NM_001036870.1\| Arabidopsis thaliana unknown protein AT5G268...	40	5.2
20	ref\|NM_122567.2\| Arabidopsis thaliana unknown protein AT5G26850 ...	40	5.2
21	ref\|NM_001036871.1\| Arabidopsis thaliana unknown protein AT5G268...	40	5.2
22	gb\|AC164620.5\| Mus musculus BAC clone RP23-64H20 from chromosome...	40	5.2
23	ref\|XM_724868.1\| Plasmodium yoelii yoelii str. 17XNL rhoptry pro...	40	5.2
24	gb\|BT010590.1\| Arabidopsis thaliana At5g26850 gene, complete cds	40	5.2
25	gb\|AC154559.2\| Mus musculus BAC clone RP23-399P3 from chromosome...	40	5.2
26	gb\|AE014822.1\| Plasmodium falciparum 3D7 chromosome 14 section 7...	40	5.2
27	gb\|AC010026.7\| Drosophila melanogaster 3L BAC RP98-1I24 (Roswell...	40	5.2
28	gb\|AC027139.5\|AC027139 Homo sapiens, clone RP11-1H8, complete se...	40	5.2
29	gb\|AF007270.1\|F2P16 Arabidopsis thaliana BAC F2P16, complete seq...	40	5.2
30	emb\|AL954686.9\| Mouse DNA sequence from clone RP23-167L6 on chro...	40	5.2
31	dbj\|AK117216.1\| Arabidopsis thaliana At5g26850 mRNA for unknown ...	40	5.2
32	emb\|AL121841.5\|CNS01DSS Human chromosome 14 DNA sequence BAC R-8...	40	5.2
33	gb\|AE003468.3\| Drosophila melanogaster chromosome 3L, section 2 ...	40	5.2
34	emb\|CT009541.12\| Mouse DNA sequence from clone RP23-56C21 on chr...	40	5.2
35	emb\|AL808133.17\| Mouse DNA sequence from clone RP23-457N24 on ch...	40	5.2
36	emb\|AJ850059.1\| Sphingopyxis macrogoltabida orf1, ahpI3 gene, ah...	40	5.2
37	gb\|AC141646.4\| Mus musculus BAC clone RP23-84E4 from chromosome ...	40	5.2
38	emb\|AL844489.6\| Mouse DNA sequence from clone RP23-101P8 on chro...	40	5.2
39	emb\|AL451076.14\| Mouse DNA sequence from clone RP23-43O20 on chr...	40	5.2

>ref|NM_189191.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3582

 Score =  325 bits (164), Expect = 6e-86
 Identities = 299/344 (86%)
 Strand = Plus / Plus

                                                                       
Query: 20  ttgcgtgcatctcatcctgattatgaaattcagatgacaggttcatcagaggtggacttg 79
           |||||||| ||||||||| | ||||||||| |||  |  |||||||||||||||||||||
Sbjct: 553 ttgcgtgcttctcatcctaactatgaaattgagacaaggggttcatcagaggtggacttg 612

                                                                       
Query: 80  cgttttggaaatgctgtagtaaatgatgttttcttcgtatctggatacaatattcatggc 139
           || |||||||||||||| | | ||||||| |||||  |||||||||| |||||| |||||
Sbjct: 613 cgatttggaaatgctgttgcagatgatgtcttctttctatctggatataatatttatggc 672

                                                                       
Query: 140 tctgtagttgcgcagggaaatccaatcttgggagttcacctgtatttatattcaaatgat 199
           ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 673 tctgtagttgcacagggaaatccaatcttgggagttcacctttatttatattcaaatgac 732

                                                                       
Query: 200 gtaaaggaggttccttgctcgcaaggtttgatcgatgcacccagggaaggtgctctttgc 259
           ||||  ||||| |||||  | ||| || | |  ||||||||||| |||||||||||||||
Sbjct: 733 gtaacagaggtgccttgtccacaaagtattagtgatgcacccagagaaggtgctctttgc 792

                                                                       
Query: 260 catgcagtatctggtgcggatgggaagttctcatttagatcaatgccctgtggtagctat 319
           ||||||||||||||||| ||||| |||||| | ||||| ||  | || ||||||||||||
Sbjct: 793 catgcagtatctggtgctgatggaaagttcacgtttagttcgttaccttgtggtagctat 852

                                                       
Query: 320 gatctgttgccatactacagaggggaaaacactgtttttgatgt 363
           || |||||||| ||||||| ||||||||| ||||||||||||||
Sbjct: 853 gagctgttgccgtactacaaaggggaaaatactgtttttgatgt 896

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  145 bits (73), Expect = 1e-31
 Identities = 121/137 (88%)
 Strand = Plus / Minus

                                                                            
Query: 153      agggaaatccaatcttgggagttcacctgtatttatattcaaatgatgtaaaggaggttc 212
                |||||||||||||||||||||||||||| ||||||||||||||||| ||||  ||||| |
Sbjct: 11033206 agggaaatccaatcttgggagttcacctttatttatattcaaatgacgtaacagaggtgc 11033147

                                                                            
Query: 213      cttgctcgcaaggtttgatcgatgcacccagggaaggtgctctttgccatgcagtatctg 272
                ||||  | ||| || | |  ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 11033146 cttgtccacaaagtattagtgatgcacccagagaaggtgctctttgccatgcagtatctg 11033087

                                 
Query: 273      gtgcggatgggaagttc 289
                |||| ||||| ||||||
Sbjct: 11033086 gtgctgatggaaagttc 11033070



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                            
Query: 69       aggtggacttgcgttttggaaatgctgtagtaaatgatgttttcttcgtatctggataca 128
                ||||||||||||| |||||||||||||| | | ||||||| |||||  |||||||||| |
Sbjct: 11033428 aggtggacttgcgatttggaaatgctgttgcagatgatgtcttctttctatctggatata 11033369

                                           
Query: 129      atattcatggctctgtagttgcgcagg 155
                ||||| |||||||||||||||| ||||
Sbjct: 11033368 atatttatggctctgtagttgcacagg 11033342



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                     
Query: 311      ggtagctatgatctgttgccatactacagaggggaaaacactgtttttgatgt 363
                ||||||||||| |||||||| ||||||| ||||||||| ||||||||||||||
Sbjct: 11032221 ggtagctatgagctgttgccgtactacaaaggggaaaatactgtttttgatgt 11032169



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                     
Query: 20       ttgcgtgcatctcatcctgattatgaaattcagatgacaggttcatcagaggt 72
                |||||||| ||||||||| | ||||||||| |||  |  ||||||||||||||
Sbjct: 11033563 ttgcgtgcttctcatcctaactatgaaattgagacaaggggttcatcagaggt 11033511

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>dbj|AP003578.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0682B08
          Length = 138376

 Score =  145 bits (73), Expect = 1e-31
 Identities = 121/137 (88%)
 Strand = Plus / Minus

                                                                         
Query: 153   agggaaatccaatcttgggagttcacctgtatttatattcaaatgatgtaaaggaggttc 212
             |||||||||||||||||||||||||||| ||||||||||||||||| ||||  ||||| |
Sbjct: 62088 agggaaatccaatcttgggagttcacctttatttatattcaaatgacgtaacagaggtgc 62029

                                                                         
Query: 213   cttgctcgcaaggtttgatcgatgcacccagggaaggtgctctttgccatgcagtatctg 272
             ||||  | ||| || | |  ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 62028 cttgtccacaaagtattagtgatgcacccagagaaggtgctctttgccatgcagtatctg 61969

                              
Query: 273   gtgcggatgggaagttc 289
             |||| ||||| ||||||
Sbjct: 61968 gtgctgatggaaagttc 61952



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                         
Query: 69    aggtggacttgcgttttggaaatgctgtagtaaatgatgttttcttcgtatctggataca 128
             ||||||||||||| |||||||||||||| | | ||||||| |||||  |||||||||| |
Sbjct: 62310 aggtggacttgcgatttggaaatgctgttgcagatgatgtcttctttctatctggatata 62251

                                        
Query: 129   atattcatggctctgtagttgcgcagg 155
             ||||| |||||||||||||||| ||||
Sbjct: 62250 atatttatggctctgtagttgcacagg 62224



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                  
Query: 311   ggtagctatgatctgttgccatactacagaggggaaaacactgtttttgatgt 363
             ||||||||||| |||||||| ||||||| ||||||||| ||||||||||||||
Sbjct: 61103 ggtagctatgagctgttgccgtactacaaaggggaaaatactgtttttgatgt 61051



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                  
Query: 20    ttgcgtgcatctcatcctgattatgaaattcagatgacaggttcatcagaggt 72
             |||||||| ||||||||| | ||||||||| |||  |  ||||||||||||||
Sbjct: 62445 ttgcgtgcttctcatcctaactatgaaattgagacaaggggttcatcagaggt 62393

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>dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0487H02
          Length = 145491

 Score =  145 bits (73), Expect = 1e-31
 Identities = 121/137 (88%)
 Strand = Plus / Minus

                                                                          
Query: 153    agggaaatccaatcttgggagttcacctgtatttatattcaaatgatgtaaaggaggttc 212
              |||||||||||||||||||||||||||| ||||||||||||||||| ||||  ||||| |
Sbjct: 136048 agggaaatccaatcttgggagttcacctttatttatattcaaatgacgtaacagaggtgc 135989

                                                                          
Query: 213    cttgctcgcaaggtttgatcgatgcacccagggaaggtgctctttgccatgcagtatctg 272
              ||||  | ||| || | |  ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 135988 cttgtccacaaagtattagtgatgcacccagagaaggtgctctttgccatgcagtatctg 135929

                               
Query: 273    gtgcggatgggaagttc 289
              |||| ||||| ||||||
Sbjct: 135928 gtgctgatggaaagttc 135912



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                          
Query: 69     aggtggacttgcgttttggaaatgctgtagtaaatgatgttttcttcgtatctggataca 128
              ||||||||||||| |||||||||||||| | | ||||||| |||||  |||||||||| |
Sbjct: 136270 aggtggacttgcgatttggaaatgctgttgcagatgatgtcttctttctatctggatata 136211

                                         
Query: 129    atattcatggctctgtagttgcgcagg 155
              ||||| |||||||||||||||| ||||
Sbjct: 136210 atatttatggctctgtagttgcacagg 136184



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                   
Query: 311    ggtagctatgatctgttgccatactacagaggggaaaacactgtttttgatgt 363
              ||||||||||| |||||||| ||||||| ||||||||| ||||||||||||||
Sbjct: 135063 ggtagctatgagctgttgccgtactacaaaggggaaaatactgtttttgatgt 135011



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                   
Query: 20     ttgcgtgcatctcatcctgattatgaaattcagatgacaggttcatcagaggt 72
              |||||||| ||||||||| | ||||||||| |||  |  ||||||||||||||
Sbjct: 136405 ttgcgtgcttctcatcctaactatgaaattgagacaaggggttcatcagaggt 136353

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>gb|BT014138.1| Lycopersicon esculentum clone 133257F, mRNA sequence
          Length = 1434

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                             
Query: 344  gaaaacactgtttttgatgtttcaccttcttca 376
            |||||||| ||||||||||||||||||||||||
Sbjct: 974  gaaaacaccgtttttgatgtttcaccttcttca 1006



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 110 ttcttcgtatctggatacaatattcatggctctgtagttgcgcagggaaatccaatcttg 169
           ||||| |||||||| ||  |||||| ||| ||||| ||||| ||||||||||| ||  ||
Sbjct: 728 ttctttgtatctggttatgatattcgtggatctgtggttgctcagggaaatcccatactg 787

                   
Query: 170 ggagttca 177
           ||||||||
Sbjct: 788 ggagttca 795

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>gb|AC102320.6| Mus musculus chromosome 1, clone RP24-459A11, complete sequence
          Length = 121264

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 182    tatttatattcaaatgatgtaa 203
              ||||||||||||||||||||||
Sbjct: 119222 tatttatattcaaatgatgtaa 119201

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>gb|AC011592.5| Homo sapiens chromosome 3, clone RP11-42F12, complete sequence
          Length = 152132

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 187   atattcaaatgatgtaaaggag 208
             ||||||||||||||||||||||
Sbjct: 39433 atattcaaatgatgtaaaggag 39454

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>gb|AC117397.2| Homo sapiens 3 BAC RP11-92D20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 128398

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 187    atattcaaatgatgtaaaggag 208
              ||||||||||||||||||||||
Sbjct: 124815 atattcaaatgatgtaaaggag 124836

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>gb|AC131661.4| Mus musculus BAC clone RP23-251N10 from 1, complete sequence
          Length = 211188

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 182   tatttatattcaaatgatgtaa 203
             ||||||||||||||||||||||
Sbjct: 35583 tatttatattcaaatgatgtaa 35562

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>ref|XM_650274.1| Entamoeba histolytica HM-1:IMSS villidin (30.t00030) partial mRNA
          Length = 4410

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 183  atttatattcaaatgatgtaa 203
            |||||||||||||||||||||
Sbjct: 3938 atttatattcaaatgatgtaa 3958

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>emb|CR385065.21| Zebrafish DNA sequence from clone CH211-232F6 in linkage group 6,
             complete sequence
          Length = 194459

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 354   tttttgatgtttcaccttcttcattacat 382
             ||||||||||||||||||| ||| |||||
Sbjct: 82986 tttttgatgtttcaccttcatcagtacat 82958

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>ref|XM_939077.1| PREDICTED: Homo sapiens chromosome 18 open reading frame 18
           (C18orf18), mRNA
          Length = 3130

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 340 aggggaaaacactgtttttga 360
           |||||||||||||||||||||
Sbjct: 46  aggggaaaacactgtttttga 26

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>ref|XM_928362.1| PREDICTED: Homo sapiens chromosome 18 open reading frame 18
           (C18orf18), mRNA
          Length = 3130

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 340 aggggaaaacactgtttttga 360
           |||||||||||||||||||||
Sbjct: 46  aggggaaaacactgtttttga 26

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>gb|AC159808.2| Mus musculus BAC clone RP24-357G23 from chromosome 12, complete
             sequence
          Length = 155139

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 177   acctgtatttatattcaaatg 197
             |||||||||||||||||||||
Sbjct: 28946 acctgtatttatattcaaatg 28926

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>emb|BX119907.8| Zebrafish DNA sequence from clone CH211-208D14 in linkage group 6,
              complete sequence
          Length = 181060

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 354    tttttgatgtttcaccttcttcattacat 382
              ||||||||||||||||||| ||| |||||
Sbjct: 127210 tttttgatgtttcaccttcatcagtacat 127238

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>dbj|AP005326.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-147K23, complete
           sequence
          Length = 65302

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 340 aggggaaaacactgtttttga 360
           |||||||||||||||||||||
Sbjct: 82  aggggaaaacactgtttttga 102

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>dbj|AP001496.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-835E18, complete
              sequence
          Length = 179358

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 340    aggggaaaacactgtttttga 360
              |||||||||||||||||||||
Sbjct: 102578 aggggaaaacactgtttttga 102598

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>gb|AC172877.1| Brassica rapa subsp. pekinensis clone KBrH042F19, complete sequence
          Length = 108651

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 153  agggaaatccaatcttgggagttca 177
            |||||||||||||| ||||||||||
Sbjct: 1031 agggaaatccaatcctgggagttca 1055

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>ref|NM_001036870.1| Arabidopsis thaliana unknown protein AT5G26850 transcript variant
           AT5G26850.2 mRNA, complete cds
          Length = 3041

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Minus

                                          
Query: 348 acactgtttttgatgtt--tcaccttcttca 376
           |||||||||||||||||  ||||||||||||
Sbjct: 580 acactgtttttgatgttcctcaccttcttca 550

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>ref|NM_122567.2| Arabidopsis thaliana unknown protein AT5G26850 transcript variant
           AT5G26850.1 mRNA, complete cds
          Length = 3092

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Minus

                                          
Query: 348 acactgtttttgatgtt--tcaccttcttca 376
           |||||||||||||||||  ||||||||||||
Sbjct: 631 acactgtttttgatgttcctcaccttcttca 601

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>ref|NM_001036871.1| Arabidopsis thaliana unknown protein AT5G26850 transcript variant
           AT5G26850.3 mRNA, complete cds
          Length = 3100

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Minus

                                          
Query: 348 acactgtttttgatgtt--tcaccttcttca 376
           |||||||||||||||||  ||||||||||||
Sbjct: 639 acactgtttttgatgttcctcaccttcttca 609

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>gb|AC164620.5| Mus musculus BAC clone RP23-64H20 from chromosome 18, complete sequence
          Length = 182838

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 336   acagaggggaaaacactgtt 355
             ||||||||||||||||||||
Sbjct: 77121 acagaggggaaaacactgtt 77140

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>ref|XM_724868.1| Plasmodium yoelii yoelii str. 17XNL rhoptry protein (PY02104) partial
            mRNA
          Length = 7984

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 355  ttttgatgtttcaccttctt 374
            ||||||||||||||||||||
Sbjct: 2103 ttttgatgtttcaccttctt 2084

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>gb|BT010590.1| Arabidopsis thaliana At5g26850 gene, complete cds
          Length = 2913

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Minus

                                          
Query: 348 acactgtttttgatgtt--tcaccttcttca 376
           |||||||||||||||||  ||||||||||||
Sbjct: 534 acactgtttttgatgttcctcaccttcttca 504

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>gb|AC154559.2| Mus musculus BAC clone RP23-399P3 from chromosome 14, complete sequence
          Length = 198078

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   tacagaggggaaaacactgt 354
             ||||||||||||||||||||
Sbjct: 71182 tacagaggggaaaacactgt 71163

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>gb|AE014822.1| Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete
              sequence
          Length = 253924

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 193    aaatgatgtaaaggaggttc 212
              ||||||||||||||||||||
Sbjct: 253032 aaatgatgtaaaggaggttc 253051

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>gb|AC010026.7| Drosophila melanogaster 3L BAC RP98-1I24 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 179776

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 340    aggggaaaacactgtttttg 359
              ||||||||||||||||||||
Sbjct: 124582 aggggaaaacactgtttttg 124601

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>gb|AC027139.5|AC027139 Homo sapiens, clone RP11-1H8, complete sequence
          Length = 151498

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 36     ctgattatgaaattcagatg 55
              ||||||||||||||||||||
Sbjct: 133843 ctgattatgaaattcagatg 133824

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>gb|AF007270.1|F2P16 Arabidopsis thaliana BAC F2P16, complete sequence
          Length = 110946

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Minus

                                            
Query: 348   acactgtttttgatgtt--tcaccttcttca 376
             |||||||||||||||||  ||||||||||||
Sbjct: 48424 acactgtttttgatgttcctcaccttcttca 48394

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>emb|AL954686.9| Mouse DNA sequence from clone RP23-167L6 on chromosome X, complete
             sequence
          Length = 78045

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 325   gttgccatactacagagggg 344
             ||||||||||||||||||||
Sbjct: 61037 gttgccatactacagagggg 61056

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>dbj|AK117216.1| Arabidopsis thaliana At5g26850 mRNA for unknown protein, complete
           cds, clone: RAFL16-76-N10
          Length = 3204

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Minus

                                          
Query: 348 acactgtttttgatgtt--tcaccttcttca 376
           |||||||||||||||||  ||||||||||||
Sbjct: 610 acactgtttttgatgttcctcaccttcttca 580

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>emb|AL121841.5|CNS01DSS Human chromosome 14 DNA sequence BAC R-850C20 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 207945

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   ggaaatccaatcttgggagt 174
             ||||||||||||||||||||
Sbjct: 40496 ggaaatccaatcttgggagt 40477

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>gb|AE003468.3| Drosophila melanogaster chromosome 3L, section 2 of 83 of the complete
              sequence
          Length = 307657

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 340    aggggaaaacactgtttttg 359
              ||||||||||||||||||||
Sbjct: 117741 aggggaaaacactgtttttg 117722

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>emb|CT009541.12| Mouse DNA sequence from clone RP23-56C21 on chromosome 14, complete
             sequence
          Length = 215157

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   tacagaggggaaaacactgt 354
             ||||||||||||||||||||
Sbjct: 20497 tacagaggggaaaacactgt 20478

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>emb|AL808133.17| Mouse DNA sequence from clone RP23-457N24 on chromosome X, complete
             sequence
          Length = 170192

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 325   gttgccatactacagagggg 344
             ||||||||||||||||||||
Sbjct: 28122 gttgccatactacagagggg 28141

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>emb|AJ850059.1| Sphingopyxis macrogoltabida orf1, ahpI3 gene, ahpG3 gene and gntR
            gene (partial), strain HXN-200
          Length = 3885

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 227  ttgatcgatgcacccagggaaggt 250
            |||||||||||||| |||||||||
Sbjct: 1974 ttgatcgatgcaccaagggaaggt 1951

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>gb|AC141646.4| Mus musculus BAC clone RP23-84E4 from chromosome 9, complete sequence
          Length = 193235

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 283    gaagttctcatttagatcaa 302
              ||||||||||||||||||||
Sbjct: 134424 gaagttctcatttagatcaa 134405

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>emb|AL844489.6| Mouse DNA sequence from clone RP23-101P8 on chromosome 2, complete
              sequence
          Length = 213549

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    cacctgtatttatattcaaa 195
              ||||||||||||||||||||
Sbjct: 206653 cacctgtatttatattcaaa 206672

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>emb|AL451076.14| Mouse DNA sequence from clone RP23-43O20 on chromosome X, complete
              sequence
          Length = 203581

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 325    gttgccatactacagagggg 344
              ||||||||||||||||||||
Sbjct: 182777 gttgccatactacagagggg 182796


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,873,018
Number of Sequences: 3902068
Number of extensions: 3873018
Number of successful extensions: 98579
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 98486
Number of HSP's gapped (non-prelim): 99
length of query: 390
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 368
effective length of database: 17,147,199,772
effective search space: 6310169516096
effective search space used: 6310169516096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result