Clone Name | bastl16b04 |
---|---|
Clone Library Name | barley_pub |
>gb|AC120990.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0040E06, complete sequence Length = 160907 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 355 gcttgtttgggcggaggcgag 375 ||||||||||||||||||||| Sbjct: 102125 gcttgtttgggcggaggcgag 102145
>gb|AC012022.13| Homo sapiens 3 BAC RP11-117L15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167994 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 239 tgtgctccctccctcttctct 259 ||||||||||||||||||||| Sbjct: 109137 tgtgctccctccctcttctct 109117
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 355 gcttgtttgggcggaggcgag 375 ||||||||||||||||||||| Sbjct: 28169450 gcttgtttgggcggaggcgag 28169470
>gb|AC007893.8| Drosophila melanogaster clone BACR02E15, complete sequence Length = 182430 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 tcagctgctgggaggcctgc 402 |||||||||||||||||||| Sbjct: 147426 tcagctgctgggaggcctgc 147445
>ref|XM_880080.1| PREDICTED: Bos taurus similar to TBP-1 interacting protein isoform 2, transcript variant 2 (LOC508530), mRNA Length = 1944 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 ccacctgtgctccctccctc 253 |||||||||||||||||||| Sbjct: 849 ccacctgtgctccctccctc 830
>ref|XM_585318.2| PREDICTED: Bos taurus similar to TBP-1 interacting protein isoform 2, transcript variant 1 (LOC508530), mRNA Length = 1903 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 ccacctgtgctccctccctc 253 |||||||||||||||||||| Sbjct: 808 ccacctgtgctccctccctc 789
>gb|AC125160.3| Mus musculus BAC clone RP24-409P4 from chromosome 7, complete sequence Length = 178643 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 acccaagaagactctgctca 80 |||||||||||||||||||| Sbjct: 26177 acccaagaagactctgctca 26196
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 cgcgaggaccctttctttcttcct 55 ||||||||||||||||||| |||| Sbjct: 5022158 cgcgaggaccctttctttcctcct 5022135
>gb|AC126440.3| Mus musculus BAC clone RP23-413M14 from chromosome 14, complete sequence Length = 207346 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 ctccacctgtgctccctccc 251 |||||||||||||||||||| Sbjct: 86253 ctccacctgtgctccctccc 86234
>gb|AC127338.4| Mus musculus BAC clone RP23-174F20 from 7, complete sequence Length = 199546 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 251 ctcttctcttggctggcttcaaga 274 ||||| |||||||||||||||||| Sbjct: 31988 ctcttgtcttggctggcttcaaga 32011
>gb|BT009947.1| Drosophila melanogaster RH67917 full insert cDNA Length = 4146 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 tcagctgctgggaggcctgc 402 |||||||||||||||||||| Sbjct: 1231 tcagctgctgggaggcctgc 1212
>gb|AC145480.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAa0064E16, from chromosome 3, complete sequence Length = 139123 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 cgcgaggaccctttctttcttcct 55 ||||||||||||||||||| |||| Sbjct: 86612 cgcgaggaccctttctttcctcct 86589
>emb|AL109753.9|HSJ875J14 Human DNA sequence from clone RP5-875J14 on chromosome Xq13.1-21.1 Contains the 3' end of the ATRX gene for alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae), complete sequence Length = 148423 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 ctcttctcttggctggcttc 270 |||||||||||||||||||| Sbjct: 39000 ctcttctcttggctggcttc 39019
>emb|AL732529.6| Mouse DNA sequence from clone RP23-254N15 on chromosome 11, complete sequence Length = 12133 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 aagactctgctcaaaatctc 87 |||||||||||||||||||| Sbjct: 5542 aagactctgctcaaaatctc 5523
>gb|AC161583.2| Mus musculus BAC clone RP24-566C13 from chromosome 12, complete sequence Length = 171366 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 accctttctttcttcctccc 58 |||||||||||||||||||| Sbjct: 112937 accctttctttcttcctccc 112956
>gb|AC116426.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0058P18, from chromosome 3, complete sequence Length = 155037 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 32 cgcgaggaccctttctttcttcct 55 ||||||||||||||||||| |||| Sbjct: 147549 cgcgaggaccctttctttcctcct 147572
>ref|NM_057420.3| Drosophila melanogaster transient receptor potential CG7875-RA (trp), mRNA Length = 4130 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 tcagctgctgggaggcctgc 402 |||||||||||||||||||| Sbjct: 1229 tcagctgctgggaggcctgc 1210
>emb|AJ704745.2| Neisseria subflava tbpB gene for transferrin binding protein B, strain 9992 Length = 1782 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 tgcttgtttgggcggaggcg 373 |||||||||||||||||||| Sbjct: 57 tgcttgtttgggcggaggcg 76
>emb|AJ704736.2| Neisseria flavescens tbpB gene for transferrin binding protein B, strain 414 Length = 1785 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 tgcttgtttgggcggaggcg 373 |||||||||||||||||||| Sbjct: 57 tgcttgtttgggcggaggcg 76
>emb|AJ704735.2| Neisseria flavescens tbpB gene for transferrin binding protein B, strain 3656 Length = 1785 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 tgcttgtttgggcggaggcg 373 |||||||||||||||||||| Sbjct: 57 tgcttgtttgggcggaggcg 76
>emb|AJ704734.2| Neisseria flavescens tbpB gene for transferrin binding protein B, strain 3191 Length = 1785 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 tgcttgtttgggcggaggcg 373 |||||||||||||||||||| Sbjct: 57 tgcttgtttgggcggaggcg 76
>emb|AJ704733.2| Neisseria flavescens tbpB gene for transferrin binding protein B, strain 13120 Length = 1785 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 tgcttgtttgggcggaggcg 373 |||||||||||||||||||| Sbjct: 57 tgcttgtttgggcggaggcg 76
>emb|AJ704732.2| Neisseria flava tbpB gene for transferrin binding protein B, strain 30008 Length = 1782 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 tgcttgtttgggcggaggcg 373 |||||||||||||||||||| Sbjct: 57 tgcttgtttgggcggaggcg 76
>emb|AJ704731.2| Neisseria cinerea tbpB gene for transferrin binding protein B, strain 415 Length = 1782 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 tgcttgtttgggcggaggcg 373 |||||||||||||||||||| Sbjct: 57 tgcttgtttgggcggaggcg 76
>emb|AJ704730.2| Neisseria sicca tbpB gene for transferrin binding protein B, strain 9913 Length = 1782 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 tgcttgtttgggcggaggcg 373 |||||||||||||||||||| Sbjct: 57 tgcttgtttgggcggaggcg 76
>gb|AC153516.8| Mus musculus 10 BAC RP23-390D8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 197506 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 agactggctctggctcctcc 296 |||||||||||||||||||| Sbjct: 132053 agactggctctggctcctcc 132034
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome Length = 2272360 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 tgcttgtttgggcggaggcg 373 |||||||||||||||||||| Sbjct: 475637 tgcttgtttgggcggaggcg 475656
>emb|CR376864.1| Pan troglodytes chromosome X BAC PTB-045G22, complete sequence Length = 151492 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 ctcttctcttggctggcttc 270 |||||||||||||||||||| Sbjct: 107957 ctcttctcttggctggcttc 107938
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 cgcgaggaccctttctttcttcct 55 ||||||||||||||||||| |||| Sbjct: 5021373 cgcgaggaccctttctttcctcct 5021350
>gb|AF268475.1|AF268475 Neisseria meningitidis transferrin binding-protein B (tbpB) mRNA, complete cds Length = 2139 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 tgcttgtttgggcggaggcg 373 |||||||||||||||||||| Sbjct: 57 tgcttgtttgggcggaggcg 76
>gb|AC007886.7|AC007886 Drosophila melanogaster, chromosome 3R, region 99D-99D, BAC clone BACR07A18, complete sequence Length = 168469 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 tcagctgctgggaggcctgc 402 |||||||||||||||||||| Sbjct: 28322 tcagctgctgggaggcctgc 28341
>emb|Y17806.1|NME17806 Neisseria meningitidis serogroup B tbpB gene, strain 92/123 Length = 2058 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 tgcttgtttgggcggaggcg 373 |||||||||||||||||||| Sbjct: 45 tgcttgtttgggcggaggcg 64
>emb|Y17805.1|NME17805 Neisseria meningitidis serogroup B tbpB gene, strain 90/94 Length = 2169 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 tgcttgtttgggcggaggcg 373 |||||||||||||||||||| Sbjct: 57 tgcttgtttgggcggaggcg 76
>emb|AJ276936.1|NME276936 Neisseria meningitidis partial tbpB gene for transferrin binding protein B subunit, allele 66, strain Z3707 Length = 2093 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 tgcttgtttgggcggaggcg 373 |||||||||||||||||||| Sbjct: 17 tgcttgtttgggcggaggcg 36
>emb|AJ276927.1|NME276927 Neisseria meningitidis partial tbpB gene for transferrin binding protein B subunit, allele 55, strain Z5828 Length = 2063 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 tgcttgtttgggcggaggcg 373 |||||||||||||||||||| Sbjct: 17 tgcttgtttgggcggaggcg 36
>emb|AJ250244.1|NME250244 Neisseria meningitidis partial tbpB gene (allele 2) for transferrin binding protein B subunit Length = 2091 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 tgcttgtttgggcggaggcg 373 |||||||||||||||||||| Sbjct: 18 tgcttgtttgggcggaggcg 37
>emb|AJ223044.1|NME223044 Neisseria meningitidis tbpB gene, strain 2713 Length = 1809 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 tgcttgtttgggcggaggcg 373 |||||||||||||||||||| Sbjct: 57 tgcttgtttgggcggaggcg 76
>emb|AJ223043.1|NME223043 Neisseria meningitidis tbpB gene, strain NGPB24 Length = 2043 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 tgcttgtttgggcggaggcg 373 |||||||||||||||||||| Sbjct: 57 tgcttgtttgggcggaggcg 76
>emb|Z50731.1|NMTBP2163 N.meningitidis DNA for tbp2 gene (strain BZ163) Length = 2163 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 tgcttgtttgggcggaggcg 373 |||||||||||||||||||| Sbjct: 57 tgcttgtttgggcggaggcg 76
>ref|XM_307205.2| Anopheles gambiae str. PEST ENSANGP00000014551 (ENSANGG00000012062), partial mRNA Length = 7980 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 agcggcggcgtgccgttgtc 212 |||||||||||||||||||| Sbjct: 4667 agcggcggcgtgccgttgtc 4648
>emb|CR391975.8| Zebrafish DNA sequence from clone CH211-276C20 in linkage group 18, complete sequence Length = 122652 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 ctccatccaaaatccccatccaga 139 ||||||||||||||||||| |||| Sbjct: 47078 ctccatccaaaatccccattcaga 47101
>emb|CT025611.16| Mouse DNA sequence from clone RP24-100P15 on chromosome 12, complete sequence Length = 240699 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 accctttctttcttcctccc 58 |||||||||||||||||||| Sbjct: 77192 accctttctttcttcctccc 77173
>gb|AE003771.3| Drosophila melanogaster chromosome 3R, section 109 of 118 of the complete sequence Length = 242528 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 tcagctgctgggaggcctgc 402 |||||||||||||||||||| Sbjct: 184358 tcagctgctgggaggcctgc 184377
>gb|M34394.1|DROTRP D.melanogaster trp protein gene, complete cds Length = 6484 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 tcagctgctgggaggcctgc 402 |||||||||||||||||||| Sbjct: 2398 tcagctgctgggaggcctgc 2379 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,633,005 Number of Sequences: 3902068 Number of extensions: 5633005 Number of successful extensions: 117723 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117530 Number of HSP's gapped (non-prelim): 193 length of query: 474 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 452 effective length of database: 17,147,199,772 effective search space: 7750534296944 effective search space used: 7750534296944 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)