Clone Name | bastl16a12 |
---|---|
Clone Library Name | barley_pub |
>gb|AC008484.7| Homo sapiens chromosome 5 clone CTC-412D23, complete sequence Length = 59451 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 69 cctccttccaaccaccacaccac 91 ||||||||||||||||||||||| Sbjct: 1569 cctccttccaaccaccacaccac 1591
>gb|AC096768.3| Homo sapiens BAC clone RP11-722P15 from 4, complete sequence Length = 180430 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Minus Query: 74 ttccaaccaccacaccacaccca 96 ||||||||||||||||||||||| Sbjct: 4586 ttccaaccaccacaccacaccca 4564
>gb|AC091986.3| Homo sapiens chromosome 5 clone RP11-68K1, complete sequence Length = 160760 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Minus Query: 69 cctccttccaaccaccacaccac 91 ||||||||||||||||||||||| Sbjct: 134210 cctccttccaaccaccacaccac 134188
>gb|AC010267.7| Homo sapiens chromosome 5 clone CTC-472C24, complete sequence Length = 186787 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 69 cctccttccaaccaccacaccac 91 ||||||||||||||||||||||| Sbjct: 143886 cctccttccaaccaccacaccac 143908
>gb|AC026431.3|AC026431 Homo sapiens chromosome 5 clone CTD-2222F6, complete sequence Length = 143080 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Minus Query: 69 cctccttccaaccaccacaccac 91 ||||||||||||||||||||||| Sbjct: 43054 cctccttccaaccaccacaccac 43032
>ref|XM_811655.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053511821.170) partial mRNA Length = 1473 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 286 acaaattcctcgtcacgatggc 307 |||||||||||||||||||||| Sbjct: 487 acaaattcctcgtcacgatggc 466
>ref|XM_813820.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510533.190) partial mRNA Length = 1473 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 286 acaaattcctcgtcacgatggc 307 |||||||||||||||||||||| Sbjct: 487 acaaattcctcgtcacgatggc 466
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 agttccaagccagatagcttc 443 ||||||||||||||||||||| Sbjct: 23168027 agttccaagccagatagcttc 23168007
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 agttccaagccagatagcttc 443 ||||||||||||||||||||| Sbjct: 23096218 agttccaagccagatagcttc 23096198
>emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC OSJNBb0076G11 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135323 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 423 agttccaagccagatagcttc 443 ||||||||||||||||||||| Sbjct: 10370 agttccaagccagatagcttc 10390
>gb|AC161193.3| Mus musculus chromosome 8, clone RP23-308L22, complete sequence Length = 177860 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 249 ggcatccagtttctcaaggacgagctgg 276 |||||| |||||||||||||| |||||| Sbjct: 88296 ggcatcaagtttctcaaggacaagctgg 88269
>gb|AC112964.8| Mus musculus chromosome 8, clone RP24-82M4, complete sequence Length = 193076 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 249 ggcatccagtttctcaaggacgagctgg 276 |||||| |||||||||||||| |||||| Sbjct: 140259 ggcatcaagtttctcaaggacaagctgg 140232
>gb|U80030.1| Caenorhabditis elegans cosmid K12D9, complete sequence Length = 36254 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 gccgacgctgtgcgggacct 364 |||||||||||||||||||| Sbjct: 30227 gccgacgctgtgcgggacct 30208
>gb|AC138896.2| Homo sapiens chromosome 16 clone RP11-455M1, complete sequence Length = 158271 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 tcaaggacgagctggaagcc 281 |||||||||||||||||||| Sbjct: 70994 tcaaggacgagctggaagcc 70975
>ref|XM_747995.1| Aspergillus fumigatus Af293 nonribosomal peptide synthase NRPS (Afu1g17200) partial mRNA Length = 14292 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 tcgtgccgacgctgtgcggg 360 |||||||||||||||||||| Sbjct: 4592 tcgtgccgacgctgtgcggg 4573
>gb|AC145285.2| Homo sapiens chromosome 16 clone RP11-1348G14, complete sequence Length = 219165 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 tcaaggacgagctggaagcc 281 |||||||||||||||||||| Sbjct: 92434 tcaaggacgagctggaagcc 92415
>gb|AC138894.2| Homo sapiens chromosome 16 clone RP11-435I10, complete sequence Length = 182289 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 tcaaggacgagctggaagcc 281 |||||||||||||||||||| Sbjct: 115329 tcaaggacgagctggaagcc 115310
>gb|AC138824.2| Homo sapiens chromosome 16 clone RP11-1119F12, complete sequence Length = 134444 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 tcaaggacgagctggaagcc 281 |||||||||||||||||||| Sbjct: 67014 tcaaggacgagctggaagcc 66995
>gb|AC002544.1|HUAC002544 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-761H5, complete sequence Length = 156641 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 tcaaggacgagctggaagcc 281 |||||||||||||||||||| Sbjct: 67526 tcaaggacgagctggaagcc 67545
>gb|AC124463.2| Mus musculus BAC clone RP24-152K14 from chromosome 1, complete sequence Length = 153199 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 gagcagcgactaatggctga 145 |||||||||||||||||||| Sbjct: 34606 gagcagcgactaatggctga 34587
>emb|AL162420.13| Human DNA sequence from clone RP11-380P16 on chromosome 9 Contains the IFNA17 gene for interferon, alpha 17, a interferon, omega 1 (IFNW1) pseudogene,the IFNA14 gene for interferon, alpha 14, the IFNA5 gene for interferon, alpha 5, a novel gene (KIAA1354) (FLJ13568) and 2 interferon pseudogenes, complete sequence Length = 124491 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 tagatacacgtttgttttct 32 |||||||||||||||||||| Sbjct: 59360 tagatacacgtttgttttct 59341
>gb|AC026454.5| Homo sapiens chromosome 16 clone CTD-2597E15, complete sequence Length = 136331 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 tcaaggacgagctggaagcc 281 |||||||||||||||||||| Sbjct: 129459 tcaaggacgagctggaagcc 129478
>emb|BX927157.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete genome; segment 10/10 Length = 140057 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 268 acgagctggaagccatgcacaaat 291 |||||||| ||||||||||||||| Sbjct: 78826 acgagctgcaagccatgcacaaat 78803
>ref|NM_172285.1| Mus musculus phospholipase C, gamma 2 (Plcg2), mRNA Length = 4345 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 249 ggcatccagtttctcaaggacgagctgg 276 |||||| |||||||||||||| |||||| Sbjct: 730 ggcatcaagtttctcaaggacaagctgg 757
>emb|CR937026.1|PT085P01 Pan troglodytes chromosome 11 BAC PTB-085P01, complete sequence Length = 218832 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tagatacacgtttgttttct 32 |||||||||||||||||||| Sbjct: 125476 tagatacacgtttgttttct 125495
>gb|AC127453.2| Homo sapiens chromosome 16 clone CTA-115H5, complete sequence Length = 63736 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 tcaaggacgagctggaagcc 281 |||||||||||||||||||| Sbjct: 41765 tcaaggacgagctggaagcc 41784
>gb|AC092052.2| Homo sapiens chromosome 3 clone RP11-329N16, complete sequence Length = 203204 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 atgttgagcaatgaatacaa 226 |||||||||||||||||||| Sbjct: 141185 atgttgagcaatgaatacaa 141166
>dbj|AK151039.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830020O22 product:phospholipase C, gamma 2, full insert sequence Length = 1938 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 249 ggcatccagtttctcaaggacgagctgg 276 |||||| |||||||||||||| |||||| Sbjct: 716 ggcatcaagtttctcaaggacaagctgg 743
>ref|XM_497491.2| PREDICTED: Homo sapiens similar to Hsp90 co-chaperone Cdc37 (Hsp90 chaperone protein kinase-targeting subunit) (p50Cdc37) (LOC441752), mRNA Length = 498 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 tcaaggacgagctggaagcc 281 |||||||||||||||||||| Sbjct: 437 tcaaggacgagctggaagcc 456
>ref|XM_930001.1| PREDICTED: Homo sapiens hypothetical protein LOC647015 (LOC647015), mRNA Length = 722 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 tcaaggacgagctggaagcc 281 |||||||||||||||||||| Sbjct: 240 tcaaggacgagctggaagcc 259
>dbj|AK170430.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630103F10 product:phospholipase C, gamma 2, full insert sequence Length = 4317 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 249 ggcatccagtttctcaaggacgagctgg 276 |||||| |||||||||||||| |||||| Sbjct: 732 ggcatcaagtttctcaaggacaagctgg 759
>dbj|AK142173.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched library, clone:D330005F24 product:phospholipase C, gamma 2, full insert sequence Length = 4308 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 249 ggcatccagtttctcaaggacgagctgg 276 |||||| |||||||||||||| |||||| Sbjct: 733 ggcatcaagtttctcaaggacaagctgg 760
>gb|AC008956.8| Homo sapiens chromosome 16 clone CTD-2343L5, complete sequence Length = 110129 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 tcaaggacgagctggaagcc 281 |||||||||||||||||||| Sbjct: 2917 tcaaggacgagctggaagcc 2936
>gb|AC138934.3| Homo sapiens chromosome 16 clone RP11-685O4, complete sequence Length = 169127 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 tcaaggacgagctggaagcc 281 |||||||||||||||||||| Sbjct: 55818 tcaaggacgagctggaagcc 55837
>gb|AC135783.2| Homo sapiens chromosome 16 clone CTD-2555L18, complete sequence Length = 224150 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 tcaaggacgagctggaagcc 281 |||||||||||||||||||| Sbjct: 180594 tcaaggacgagctggaagcc 180613
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome Length = 3309401 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 268 acgagctggaagccatgcacaaat 291 |||||||| ||||||||||||||| Sbjct: 3248170 acgagctgcaagccatgcacaaat 3248147
>gb|AC116346.2| Homo sapiens chromosome 16 clone RP11-24N18, complete sequence Length = 160521 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 tcaaggacgagctggaagcc 281 |||||||||||||||||||| Sbjct: 28536 tcaaggacgagctggaagcc 28517
>gb|AC133912.3| Homo sapiens chromosome 16 clone CTC-506N3, complete sequence Length = 128703 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 tcaaggacgagctggaagcc 281 |||||||||||||||||||| Sbjct: 90552 tcaaggacgagctggaagcc 90533
>gb|BC023877.1| Mus musculus phospholipase C, gamma 2, mRNA (cDNA clone MGC:38590 IMAGE:5354925), complete cds Length = 4345 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 249 ggcatccagtttctcaaggacgagctgg 276 |||||| |||||||||||||| |||||| Sbjct: 730 ggcatcaagtttctcaaggacaagctgg 757
>emb|AL954131.8| Mouse DNA sequence from clone RP23-32H12 on chromosome 2, complete sequence Length = 162456 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 ttggggaagttgggtgtcat 208 |||||||||||||||||||| Sbjct: 116343 ttggggaagttgggtgtcat 116362
>gb|L04569.1|HUMLVDCCB Homo sapiens (clone hHT-1) L-type voltage-dependent calcium channel a1 subunit (hHT) mRNA, complete cds Length = 8940 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 tagatacacgtttgttttct 32 |||||||||||||||||||| Sbjct: 492 tagatacacgtttgttttct 473 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,558,714 Number of Sequences: 3902068 Number of extensions: 3558714 Number of successful extensions: 77188 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77058 Number of HSP's gapped (non-prelim): 130 length of query: 448 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 426 effective length of database: 17,147,199,772 effective search space: 7304707102872 effective search space used: 7304707102872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)