>Y2559_MYCTU (Q50739) Hypothetical protein Rv2559c/MT2636|
          Length = 452

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +1

Query: 28  AMVSAEYSIDLKLSERLKQARPSATSLRAAGEATDAVGELIKSVPPQQAAPEAASGFVRD 207
           A+  A  ++DL +      AR + T+L  A EA  A GEL+     +++  +AA  + RD
Sbjct: 202 AVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGELVSVQTIERSVDKAAVRYDRD 261

>VSX1_CHICK (Q9IAL2) Visual system homeobox 1 (Transcription factor VSX1)|
           (Homeobox protein Chx10-1)
          Length = 350

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 19  IEAAMVSAEYSIDLKLSERLKQARPSATSLRAAGEA-TDAVGELIKSVPPQQAAPEAASG 195
           +  A   +  S+   L ER   ARP    LRA G A TD +G   +  PP  AAP  A G
Sbjct: 20  VAVAAAPSPASVRSALPER--SARPGGAGLRAKGFAITDLLGLEAELQPPPGAAPGPAGG 77

Query: 196 F 198
           +
Sbjct: 78  Y 78

>MYCT_HUMAN (Q96QE2) Proton myo-inositol cotransporter (H(+)-myo-inositol|
           cotransporter) (Hmit)
          Length = 629

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = +1

Query: 1   RRRQPTIEAAMVSAEYSIDLKLSERLKQARPSATSLRAAGEATDAVGELIKSVPPQ 168
           RR+QP  +AA  + E S        L  A  S+TSL++AG     VG+L ++   Q
Sbjct: 5   RRKQPEPDAASAAGECS--------LLAAAESSTSLQSAGAGGGGVGDLERAARRQ 52

>DAPB_METBF (Q46DC3) Dihydrodipicolinate reductase (EC 1.3.1.26) (DHPR)|
          Length = 263

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 22  EAAMVSAEYSIDL-KLSERLKQARPSATSLRAAGEATDAVG 141
           EAA   A+Y I++ +     K+  PS T+LRAA   ++AVG
Sbjct: 141 EAAKYLADYDIEIIEAHHNQKKDAPSGTALRAADIISEAVG 181

>TFAE_ECOLI (P09153) Tail fiber assembly protein homolog from lambdoid prophage|
           e14
          Length = 200

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 22/60 (36%), Positives = 26/60 (43%)
 Frame = +1

Query: 4   RRQPTIEAAMVSAEYSIDLKLSERLKQARPSATSLRAAGEATDAVGELIKSVPPQQAAPE 183
           +RQ  I+AAM S    I LKL    K  +   T L A  +  DAV     S  P    PE
Sbjct: 138 QRQSLIDAAMASISL-IQLKLQAGRKLTQAETTRLNAVLDYIDAVTATDTSTAPDVIWPE 196

>SRP72_CAEEL (P91240) Signal recognition particle 72 kDa protein homolog (SRP72)|
          Length = 694

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 55  DLKLSERLKQARPSATSLRAAGEATDAVGELIKSVPPQQAAPEAASGFVRDL 210
           DL +S +L  +    ++L AA    +AV EL+ +   +   PEA    + DL
Sbjct: 443 DLPISGKLGASSLLTSTLIAADSRDEAVKELVAASTAKNQTPEALKSILEDL 494

>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 51  HRPQALRAPQASAAERHLS 107
           H+PQ  R+PQA+A+  HLS
Sbjct: 887 HQPQKARSPQAAASPAHLS 905

>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 51  HRPQALRAPQASAAERHLS 107
           H+PQ  R+PQA+A+  HLS
Sbjct: 887 HQPQKARSPQAAASPAHLS 905

>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 51  HRPQALRAPQASAAERHLS 107
           H+PQ  R+PQA+A+  HLS
Sbjct: 887 HQPQKARSPQAAASPAHLS 905

>TLN1_MOUSE (P26039) Talin-1|
          Length = 2541

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +1

Query: 10  QPTIEAAMVSAEYSIDLKLSERLKQARPSATSLRAAGEATDAVGELIKSVPPQQAAP 180
           +P ++AA   A    +L  S +   A P    L+AAG    A GEL++ +      P
Sbjct: 606 RPLLQAAKGLAGAVSELLRSAQPASAEPRQNLLQAAGNVGQASGELLQQIGESDTDP 662

>TLN1_HUMAN (Q9Y490) Talin-1|
          Length = 2541

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +1

Query: 10  QPTIEAAMVSAEYSIDLKLSERLKQARPSATSLRAAGEATDAVGELIKSVPPQQAAP 180
           +P ++AA   A    +L  S +   A P    L+AAG    A GEL++ +      P
Sbjct: 606 RPLLQAAKGLAGAVSELLRSAQPASAEPRQNLLQAAGNVGQASGELLQQIGESDTDP 662


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.126    0.328 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,350,762
Number of Sequences: 219361
Number of extensions: 185289
Number of successful extensions: 666
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 80,573,946
effective HSP length: 47
effective length of database: 70,263,979
effective search space used: 1686335496
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)