Clone Name | bastl16a07 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | GIGAN_ORYSA (Q9AWL7) GIGANTEA protein | 135 | 2e-32 | 2 | GIGAN_ARATH (Q9SQI2) GIGANTEA protein | 98 | 5e-21 | 3 | PKHA1_HUMAN (Q9HB21) Pleckstrin homology domain-containing famil... | 28 | 5.2 |
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>GIGAN_ORYSA (Q9AWL7) GIGANTEA protein| Length = 1160 Score = 135 bits (341), Expect = 2e-32 Identities = 63/70 (90%), Positives = 67/70 (95%) Frame = +1 Query: 193 MSASNGKWIDGLQFSSLFWPPPHDAQQKQAXILAYVEYFGQFTSDSEQFPEDIAQLIQTC 372 MSASN KWIDGLQFSSLFWPPP D+QQKQA ILAYVEYFGQFT+DSEQFPEDIAQLIQ+C Sbjct: 1 MSASNEKWIDGLQFSSLFWPPPQDSQQKQAQILAYVEYFGQFTADSEQFPEDIAQLIQSC 60 Query: 373 YPSKDKRLVD 402 YPSK+KRLVD Sbjct: 61 YPSKEKRLVD 70
>GIGAN_ARATH (Q9SQI2) GIGANTEA protein| Length = 1173 Score = 97.8 bits (242), Expect = 5e-21 Identities = 45/69 (65%), Positives = 57/69 (82%) Frame = +1 Query: 196 SASNGKWIDGLQFSSLFWPPPHDAQQKQAXILAYVEYFGQFTSDSEQFPEDIAQLIQTCY 375 S+S+ +WIDGLQFSSL WPPP D QQ + ++AYVEYFGQFT SEQFP+DIA+L++ Y Sbjct: 4 SSSSERWIDGLQFSSLLWPPPRDPQQHKDQVVAYVEYFGQFT--SEQFPDDIAELVRHQY 61 Query: 376 PSKDKRLVD 402 PS +KRL+D Sbjct: 62 PSTEKRLLD 70
>PKHA1_HUMAN (Q9HB21) Pleckstrin homology domain-containing family A member 1| (Tandem PH domain-containing protein 1) (TAPP-1) Length = 404 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = +2 Query: 203 QMGSGLMDSSSHHCSGPRHTMRSRNRHXF*PMLSTLVSSHLTASNSRRI 349 Q G G +SS H GP S ++H F P + +SH TAS S + Sbjct: 291 QRGPG-RSASSEHPPGP-----SESKHAFRPTNAATATSHSTASRSNSL 333 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,136,695 Number of Sequences: 219361 Number of extensions: 686014 Number of successful extensions: 1645 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1622 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1644 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)