ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl16a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GIGAN_ORYSA (Q9AWL7) GIGANTEA protein 135 2e-32
2GIGAN_ARATH (Q9SQI2) GIGANTEA protein 98 5e-21
3PKHA1_HUMAN (Q9HB21) Pleckstrin homology domain-containing famil... 28 5.2

>GIGAN_ORYSA (Q9AWL7) GIGANTEA protein|
          Length = 1160

 Score =  135 bits (341), Expect = 2e-32
 Identities = 63/70 (90%), Positives = 67/70 (95%)
 Frame = +1

Query: 193 MSASNGKWIDGLQFSSLFWPPPHDAQQKQAXILAYVEYFGQFTSDSEQFPEDIAQLIQTC 372
           MSASN KWIDGLQFSSLFWPPP D+QQKQA ILAYVEYFGQFT+DSEQFPEDIAQLIQ+C
Sbjct: 1   MSASNEKWIDGLQFSSLFWPPPQDSQQKQAQILAYVEYFGQFTADSEQFPEDIAQLIQSC 60

Query: 373 YPSKDKRLVD 402
           YPSK+KRLVD
Sbjct: 61  YPSKEKRLVD 70



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>GIGAN_ARATH (Q9SQI2) GIGANTEA protein|
          Length = 1173

 Score = 97.8 bits (242), Expect = 5e-21
 Identities = 45/69 (65%), Positives = 57/69 (82%)
 Frame = +1

Query: 196 SASNGKWIDGLQFSSLFWPPPHDAQQKQAXILAYVEYFGQFTSDSEQFPEDIAQLIQTCY 375
           S+S+ +WIDGLQFSSL WPPP D QQ +  ++AYVEYFGQFT  SEQFP+DIA+L++  Y
Sbjct: 4   SSSSERWIDGLQFSSLLWPPPRDPQQHKDQVVAYVEYFGQFT--SEQFPDDIAELVRHQY 61

Query: 376 PSKDKRLVD 402
           PS +KRL+D
Sbjct: 62  PSTEKRLLD 70



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>PKHA1_HUMAN (Q9HB21) Pleckstrin homology domain-containing family A member 1|
           (Tandem PH domain-containing protein 1) (TAPP-1)
          Length = 404

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +2

Query: 203 QMGSGLMDSSSHHCSGPRHTMRSRNRHXF*PMLSTLVSSHLTASNSRRI 349
           Q G G   +SS H  GP     S ++H F P  +   +SH TAS S  +
Sbjct: 291 QRGPG-RSASSEHPPGP-----SESKHAFRPTNAATATSHSTASRSNSL 333


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,136,695
Number of Sequences: 219361
Number of extensions: 686014
Number of successful extensions: 1645
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1644
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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