ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl16a07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY679115.1| Triticum aestivum gigantea 3 (TaGI3) mRNA, comple... 412 e-112
2gb|AY679114.1| Triticum aestivum gigantea 2 (TaGI2) mRNA, comple... 412 e-112
3gb|AF543844.1| Triticum aestivum gigantea (TaGI1) mRNA, complete... 408 e-111
4gb|AY740523.1| Hordeum vulgare gigantea-like protein (GI) mRNA, ... 398 e-108
5dbj|AK072166.1| Oryza sativa (japonica cultivar-group) cDNA clon... 272 8e-70
6ref|XM_550413.1| Oryza sativa (japonica cultivar-group), mRNA 266 5e-68
7dbj|AK100147.1| Oryza sativa (japonica cultivar-group) cDNA clon... 266 5e-68
8dbj|AK067038.1| Oryza sativa (japonica cultivar-group) cDNA clon... 266 5e-68
9gb|AY740524.1| Hordeum vulgare subsp. vulgare gigantea-like prot... 230 3e-57
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 135 1e-28
11dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic D... 135 1e-28
12gb|AY022829.1| Oryza sativa microsatellite MRG5154 containing (C... 42 1.4
13gb|AF229199.1|AF229199 Oryza sativa chromosome 1 clone OSJNBa004... 42 1.4
14dbj|AP003379.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
15dbj|AK100276.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
16gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome 42 1.4
17gb|AC155340.1| Brassica rapa subsp. pekinensis chromosome Cytoge... 42 1.4
18ref|XM_474638.1| Oryza sativa (japonica cultivar-group), predic... 40 5.4
19gb|AC120887.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.4
20gb|AC120886.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.4
21gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 5.4
22emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4,... 40 5.4
23gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome 40 5.4
24dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
25dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
26dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 5.4
27dbj|AK121287.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.4
28dbj|AK107892.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.4
29gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.4 
>gb|AY679115.1| Triticum aestivum gigantea 3 (TaGI3) mRNA, complete cds
          Length = 3548

 Score =  412 bits (208), Expect = e-112
 Identities = 234/243 (96%)
 Strand = Plus / Plus

                                                                       
Query: 162 gtttctcgagcaggctcttaaactaccaagtatgtcagcgtcaaatgggaagtggattga 221
           |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 9   gtttcttgagcaggctcttaaactaccaagtatgtcagtgtcaaatgggaagtggattga 68

                                                                       
Query: 222 tggactccagttctcatcactgttctggcccccgccacacgatgcgcagcagaaacaggc 281
           ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 69  tgggctccagttctcatcactgttctggcccccgccacacgatgtgcagcagaaacaggc 128

                                                                       
Query: 282 acanattttagcctatgttgagtactttggtcagttcacatctgacagcgagcaattccc 341
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 acaaattttagcctatgttgagtactttggtcagttcacatctgacagcgagcaattccc 188

                                                                       
Query: 342 ggaggatatagctcagctaattcaaacttgctatccatcaaaagacaagcggttggtaga 401
           ||||||| |||||||||||||||||| || ||||||||||||||| ||||||||||||||
Sbjct: 189 ggaggatgtagctcagctaattcaaagttactatccatcaaaagaaaagcggttggtaga 248

              
Query: 402 tga 404
           |||
Sbjct: 249 tga 251
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>gb|AY679114.1| Triticum aestivum gigantea 2 (TaGI2) mRNA, complete cds
          Length = 3543

 Score =  412 bits (208), Expect = e-112
 Identities = 234/243 (96%)
 Strand = Plus / Plus

                                                                       
Query: 162 gtttctcgagcaggctcttaaactaccaagtatgtcagcgtcaaatgggaagtggattga 221
           |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 9   gtttcttgagcaggctcttaaactaccaagtatgtcagtgtcaaatgggaagtggattga 68

                                                                       
Query: 222 tggactccagttctcatcactgttctggcccccgccacacgatgcgcagcagaaacaggc 281
           ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 69  tgggctccagttctcatcactgttctggcccccgccacacgatgtgcagcagaaacaggc 128

                                                                       
Query: 282 acanattttagcctatgttgagtactttggtcagttcacatctgacagcgagcaattccc 341
           ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 129 acaaattttagcctatgttgagtactttggtcagttcacatctgatagcgagcaattccc 188

                                                                       
Query: 342 ggaggatatagctcagctaattcaaacttgctatccatcaaaagacaagcggttggtaga 401
           ||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 189 ggaggatgtagctcagctaattcaaagttgctatccatcaaaagaaaagcggttggtaga 248

              
Query: 402 tga 404
           |||
Sbjct: 249 tga 251
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>gb|AF543844.1| Triticum aestivum gigantea (TaGI1) mRNA, complete cds
          Length = 4012

 Score =  408 bits (206), Expect = e-111
 Identities = 235/245 (95%)
 Strand = Plus / Plus

                                                                       
Query: 160 gagtttctcgagcaggctcttaaactaccaagtatgtcagcgtcaaatgggaagtggatt 219
           |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 165 gagtttcttgagcaggctcttaaactaccaagtatgtcagtgtcaaatgggaagtggatt 224

                                                                       
Query: 220 gatggactccagttctcatcactgttctggcccccgccacacgatgcgcagcagaaacag 279
           ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 225 gatgggctccagttctcatcactgttctggcccccgccacacgatgtgcagcagaaacag 284

                                                                       
Query: 280 gcacanattttagcctatgttgagtactttggtcagttcacatctgacagcgagcaattc 339
           ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 285 gcacaaattttagcctatgtcgagtactttgggcagttcacatctgacagcgagcaattc 344

                                                                       
Query: 340 ccggaggatatagctcagctaattcaaacttgctatccatcaaaagacaagcggttggta 399
           ||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 345 ccggaggatgtagctcagctaattcaaagttgctatccatcaaaagaaaagcggttggta 404

                
Query: 400 gatga 404
           |||||
Sbjct: 405 gatga 409
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>gb|AY740523.1| Hordeum vulgare gigantea-like protein (GI) mRNA, complete cds
          Length = 3480

 Score =  398 bits (201), Expect = e-108
 Identities = 209/212 (98%)
 Strand = Plus / Plus

                                                                       
Query: 193 atgtcagcgtcaaatgggaagtggattgatggactccagttctcatcactgttctggccc 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgtcagcgtcaaatgggaagtggattgatggactccagttctcatcactgttctggccc 60

                                                                       
Query: 253 ccgccacacgatgcgcagcagaaacaggcacanattttagcctatgttgagtactttggt 312
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 61  ccgccacacgatgcgcagcagaaacaggcacaaattttagcctatgttgagtactttggt 120

                                                                       
Query: 313 cagttcacatctgacagcgagcaattcccggaggatatagctcagctaattcaaacttgc 372
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 121 cagttcacatctgacagcgagcaattcccggaggatgtagctcagctaattcaaacttgc 180

                                           
Query: 373 tatccatcaaaagacaagcggttggtagatga 404
           |||||||||||||| |||||||||||||||||
Sbjct: 181 tatccatcaaaagaaaagcggttggtagatga 212
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>dbj|AK072166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134K20, full
           insert sequence
          Length = 4252

 Score =  272 bits (137), Expect = 8e-70
 Identities = 208/232 (89%)
 Strand = Plus / Plus

                                                                       
Query: 161 agtttctcgagcaggctcttaaactaccaagtatgtcagcgtcaaatgggaagtggattg 220
           ||||||| | |||||||||| | ||||||||||||||||| ||||||| |||||||||||
Sbjct: 375 agtttcttgggcaggctcttgagctaccaagtatgtcagcttcaaatgagaagtggattg 434

                                                                       
Query: 221 atggactccagttctcatcactgttctggcccccgccacacgatgcgcagcagaaacagg 280
           |||| ||||||||||||||||||||||||||||| ||||| ||| | || || |||||||
Sbjct: 435 atgggctccagttctcatcactgttctggcccccaccacaggattcacaacaaaaacagg 494

                                                                       
Query: 281 cacanattttagcctatgttgagtactttggtcagttcacatctgacagcgagcaattcc 340
           |||| ||| | |||||||||||||||||||| ||||| ||| ||||||| ||||||||||
Sbjct: 495 cacaaattctggcctatgttgagtactttggccagtttacagctgacagtgagcaattcc 554

                                                               
Query: 341 cggaggatatagctcagctaattcaaacttgctatccatcaaaagacaagcg 392
           | || |||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 555 ctgaagatatagctcagctaattcaaagttgctatccatcaaaagaaaagcg 606
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>ref|XM_550413.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4184

 Score =  266 bits (134), Expect = 5e-68
 Identities = 199/221 (90%)
 Strand = Plus / Plus

                                                                       
Query: 172 caggctcttaaactaccaagtatgtcagcgtcaaatgggaagtggattgatggactccag 231
           ||||||||| | ||||||||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct: 417 caggctcttgagctaccaagtatgtcagcttcaaatgagaagtggattgatgggctccag 476

                                                                       
Query: 232 ttctcatcactgttctggcccccgccacacgatgcgcagcagaaacaggcacanatttta 291
           ||||||||||||||||||||||| ||||| ||| | || || ||||||||||| ||| | 
Sbjct: 477 ttctcatcactgttctggcccccaccacaggattcacaacaaaaacaggcacaaattctg 536

                                                                       
Query: 292 gcctatgttgagtactttggtcagttcacatctgacagcgagcaattcccggaggatata 351
           |||||||||||||||||||| ||||| ||| ||||||| ||||||||||| || ||||||
Sbjct: 537 gcctatgttgagtactttggccagtttacagctgacagtgagcaattccctgaagatata 596

                                                    
Query: 352 gctcagctaattcaaacttgctatccatcaaaagacaagcg 392
           |||||||||||||||| |||||||||||||||||| |||||
Sbjct: 597 gctcagctaattcaaagttgctatccatcaaaagaaaagcg 637
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>dbj|AK100147.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014E02, full
           insert sequence
          Length = 3682

 Score =  266 bits (134), Expect = 5e-68
 Identities = 199/221 (90%)
 Strand = Plus / Plus

                                                                       
Query: 172 caggctcttaaactaccaagtatgtcagcgtcaaatgggaagtggattgatggactccag 231
           ||||||||| | ||||||||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct: 398 caggctcttgagctaccaagtatgtcagcttcaaatgagaagtggattgatgggctccag 457

                                                                       
Query: 232 ttctcatcactgttctggcccccgccacacgatgcgcagcagaaacaggcacanatttta 291
           ||||||||||||||||||||||| ||||| ||| | || || ||||||||||| ||| | 
Sbjct: 458 ttctcatcactgttctggcccccaccacaggattcacaacaaaaacaggcacaaattctg 517

                                                                       
Query: 292 gcctatgttgagtactttggtcagttcacatctgacagcgagcaattcccggaggatata 351
           |||||||||||||||||||| ||||| ||| ||||||| ||||||||||| || ||||||
Sbjct: 518 gcctatgttgagtactttggccagtttacagctgacagtgagcaattccctgaagatata 577

                                                    
Query: 352 gctcagctaattcaaacttgctatccatcaaaagacaagcg 392
           |||||||||||||||| |||||||||||||||||| |||||
Sbjct: 578 gctcagctaattcaaagttgctatccatcaaaagaaaagcg 618
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>dbj|AK067038.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091I22, full
           insert sequence
          Length = 4185

 Score =  266 bits (134), Expect = 5e-68
 Identities = 199/221 (90%)
 Strand = Plus / Plus

                                                                       
Query: 172 caggctcttaaactaccaagtatgtcagcgtcaaatgggaagtggattgatggactccag 231
           ||||||||| | ||||||||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct: 417 caggctcttgagctaccaagtatgtcagcttcaaatgagaagtggattgatgggctccag 476

                                                                       
Query: 232 ttctcatcactgttctggcccccgccacacgatgcgcagcagaaacaggcacanatttta 291
           ||||||||||||||||||||||| ||||| ||| | || || ||||||||||| ||| | 
Sbjct: 477 ttctcatcactgttctggcccccaccacaggattcacaacaaaaacaggcacaaattctg 536

                                                                       
Query: 292 gcctatgttgagtactttggtcagttcacatctgacagcgagcaattcccggaggatata 351
           |||||||||||||||||||| ||||| ||| ||||||| ||||||||||| || ||||||
Sbjct: 537 gcctatgttgagtactttggccagtttacagctgacagtgagcaattccctgaagatata 596

                                                    
Query: 352 gctcagctaattcaaacttgctatccatcaaaagacaagcg 392
           |||||||||||||||| |||||||||||||||||| |||||
Sbjct: 597 gctcagctaattcaaagttgctatccatcaaaagaaaagcg 637
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>gb|AY740524.1| Hordeum vulgare subsp. vulgare gigantea-like protein (GI) gene,
            complete cds
          Length = 7682

 Score =  230 bits (116), Expect = 3e-57
 Identities = 119/120 (99%)
 Strand = Plus / Plus

                                                                        
Query: 161  agtttctcgagcaggctcttaaactaccaagtatgtcagcgtcaaatgggaagtggattg 220
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1581 agtttcttgagcaggctcttaaactaccaagtatgtcagcgtcaaatgggaagtggattg 1640

                                                                        
Query: 221  atggactccagttctcatcactgttctggcccccgccacacgatgcgcagcagaaacagg 280
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1641 atggactccagttctcatcactgttctggcccccgccacacgatgcgcagcagaaacagg 1700



 Score =  145 bits (73), Expect = 1e-31
 Identities = 78/80 (97%)
 Strand = Plus / Plus

                                                                        
Query: 278  aggcacanattttagcctatgttgagtactttggtcagttcacatctgacagcgagcaat 337
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1792 aggcacaaattttagcctatgttgagtactttggtcagttcacatctgacagcgagcaat 1851

                                
Query: 338  tcccggaggatatagctcag 357
            ||||||||||| ||||||||
Sbjct: 1852 tcccggaggatgtagctcag 1871



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                              
Query: 355  cagctaattcaaacttgctatccatcaaaagacaagcggttggtagatga 404
            |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1965 cagctaattcaaacttgctatccatcaaaagaaaagcggttggtagatga 2014
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  135 bits (68), Expect = 1e-28
 Identities = 92/100 (92%)
 Strand = Plus / Minus

                                                                           
Query: 161     agtttctcgagcaggctcttaaactaccaagtatgtcagcgtcaaatgggaagtggattg 220
               ||||||| | |||||||||| | ||||||||||||||||| ||||||| |||||||||||
Sbjct: 4335469 agtttcttgggcaggctcttgagctaccaagtatgtcagcttcaaatgagaagtggattg 4335410

                                                       
Query: 221     atggactccagttctcatcactgttctggcccccgccaca 260
               |||| ||||||||||||||||||||||||||||| |||||
Sbjct: 4335409 atgggctccagttctcatcactgttctggcccccaccaca 4335370



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                           
Query: 278     aggcacanattttagcctatgttgagtactttggtcagttcacatctgacagcgagcaat 337
               ||||||| ||| | |||||||||||||||||||| ||||| ||| ||||||| |||||||
Sbjct: 4335260 aggcacaaattctggcctatgttgagtactttggccagtttacagctgacagtgagcaat 4335201

                                   
Query: 338     tcccggaggatatagctcag 357
               |||| || ||||||||||||
Sbjct: 4335200 tccctgaagatatagctcag 4335181



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                     
Query: 355     cagctaattcaaacttgctatccatcaaaagacaagcg 392
               ||||||||||||| |||||||||||||||||| |||||
Sbjct: 4335091 cagctaattcaaagttgctatccatcaaaagaaaagcg 4335054



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 101      atcccgtcgccggcgccgccg 121
                |||||||||||||||||||||
Sbjct: 38443545 atcccgtcgccggcgccgccg 38443525
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>dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0666G04
          Length = 141983

 Score =  135 bits (68), Expect = 1e-28
 Identities = 92/100 (92%)
 Strand = Plus / Minus

                                                                          
Query: 161    agtttctcgagcaggctcttaaactaccaagtatgtcagcgtcaaatgggaagtggattg 220
              ||||||| | |||||||||| | ||||||||||||||||| ||||||| |||||||||||
Sbjct: 115239 agtttcttgggcaggctcttgagctaccaagtatgtcagcttcaaatgagaagtggattg 115180

                                                      
Query: 221    atggactccagttctcatcactgttctggcccccgccaca 260
              |||| ||||||||||||||||||||||||||||| |||||
Sbjct: 115179 atgggctccagttctcatcactgttctggcccccaccaca 115140



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                          
Query: 278    aggcacanattttagcctatgttgagtactttggtcagttcacatctgacagcgagcaat 337
              ||||||| ||| | |||||||||||||||||||| ||||| ||| ||||||| |||||||
Sbjct: 115030 aggcacaaattctggcctatgttgagtactttggccagtttacagctgacagtgagcaat 114971

                                  
Query: 338    tcccggaggatatagctcag 357
              |||| || ||||||||||||
Sbjct: 114970 tccctgaagatatagctcag 114951



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                    
Query: 355    cagctaattcaaacttgctatccatcaaaagacaagcg 392
              ||||||||||||| |||||||||||||||||| |||||
Sbjct: 114861 cagctaattcaaagttgctatccatcaaaagaaaagcg 114824
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>gb|AY022829.1| Oryza sativa microsatellite MRG5154 containing (CGC)X9, genomic
           sequence
          Length = 227

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 101 atcccgtcgccggcgccgccg 121
           |||||||||||||||||||||
Sbjct: 185 atcccgtcgccggcgccgccg 205
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>gb|AF229199.1|AF229199 Oryza sativa chromosome 1 clone OSJNBa0048I01, complete sequence
          Length = 193444

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 101   atcccgtcgccggcgccgccg 121
             |||||||||||||||||||||
Sbjct: 36642 atcccgtcgccggcgccgccg 36622
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>dbj|AP003379.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0408G07
          Length = 126631

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 101   atcccgtcgccggcgccgccg 121
             |||||||||||||||||||||
Sbjct: 28960 atcccgtcgccggcgccgccg 28940
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>dbj|AK100276.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073G17, full
           insert sequence
          Length = 2340

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 101 atcccgtcgccggcgccgccg 121
           |||||||||||||||||||||
Sbjct: 202 atcccgtcgccggcgccgccg 222
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>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome
          Length = 2519802

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 260     acgatgcgcagcagaaacagg 280
               |||||||||||||||||||||
Sbjct: 1875843 acgatgcgcagcagaaacagg 1875863
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>gb|AC155340.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone
              KBrH020D15, complete sequence
          Length = 143633

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 295    tatgttgagtactttggtcagttcacatc 323
              ||||| || ||||||||||||||||||||
Sbjct: 128671 tatgtcgaatactttggtcagttcacatc 128643
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>ref|XM_474638.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 438

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 tcccgtcgccggcgccgccg 121
           ||||||||||||||||||||
Sbjct: 151 tcccgtcgccggcgccgccg 132
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>gb|AC120887.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0088K21, complete sequence
          Length = 153239

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 124    tcgccgcccgagctccgtat 143
              ||||||||||||||||||||
Sbjct: 118699 tcgccgcccgagctccgtat 118680
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>gb|AC120886.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0068E24, complete sequence
          Length = 141492

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   tcgccgcccgagctccgtat 143
             ||||||||||||||||||||
Sbjct: 11489 tcgccgcccgagctccgtat 11470
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 95      cgcgcaatcccgtcgccggcgccg 118
               ||||||||| ||||||||||||||
Sbjct: 2676494 cgcgcaatctcgtcgccggcgccg 2676517
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>emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19,
             complete sequence
          Length = 144144

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   tcccgtcgccggcgccgccg 121
             ||||||||||||||||||||
Sbjct: 76672 tcccgtcgccggcgccgccg 76653
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>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 260    acgatgcgcagcagaaacaggcac 283
              |||||||||||||||||| |||||
Sbjct: 472233 acgatgcgcagcagaaaccggcac 472210
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 102     tcccgtcgccggcgccgccg 121
               ||||||||||||||||||||
Sbjct: 5100399 tcccgtcgccggcgccgccg 5100380
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 124      tcgccgcccgagctccgtat 143
                ||||||||||||||||||||
Sbjct: 22858982 tcgccgcccgagctccgtat 22858963
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 113     gcgccgccgattcgccgccc 132
               ||||||||||||||||||||
Sbjct: 2936031 gcgccgccgattcgccgccc 2936012
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>dbj|AK121287.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108P15, full
            insert sequence
          Length = 6490

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 102  tcccgtcgccggcgccgccg 121
            ||||||||||||||||||||
Sbjct: 5902 tcccgtcgccggcgccgccg 5921
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>dbj|AK107892.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-134-E09, full
           insert sequence
          Length = 735

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 tcccgtcgccggcgccgccg 121
           ||||||||||||||||||||
Sbjct: 224 tcccgtcgccggcgccgccg 205
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 124      tcgccgcccgagctccgtat 143
                ||||||||||||||||||||
Sbjct: 23168892 tcgccgcccgagctccgtat 23168873


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,023,143
Number of Sequences: 3902068
Number of extensions: 2023143
Number of successful extensions: 43645
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43314
Number of HSP's gapped (non-prelim): 331
length of query: 404
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 382
effective length of database: 17,147,199,772
effective search space: 6550230312904
effective search space used: 6550230312904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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