ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl16a05 |
|---|---|
| Clone Library Name | barley_pub |
>AKH2_MAIZE (P49080) Bifunctional aspartokinase/homoserine dehydrogenase 2,| chloroplast precursor (AK-HD 2) (AK-HSDH 2) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] Length = 917 Score = 105 bits (263), Expect = 2e-23 Identities = 62/115 (53%), Positives = 74/115 (64%), Gaps = 6/115 (5%) Frame = +3 Query: 66 MRSLAVASPVPTAAAHRR-RLRPSASGREVISQCLKCEINQDRPLGA-LRLG---GNLPR 230 M+ LAV+ +P AAA R R R S+S RE + QC K E++QD LG LR+G G+L R Sbjct: 1 MQGLAVSCQLPPAAAAARWRPRASSSNREAVLQCWKYELSQDHYLGGPLRIGQSQGSLHR 60 Query: 231 HGSKNLLTPXXXXXXXXXXXX-TYLPKGDMWSVHKFGGTCMGTPQRIQNVADVXL 392 H S N L P TYLPKGDMWSVHKFGGTCMGTP+RIQ VA++ L Sbjct: 61 HRSTNFLRPAAAAISVEQDEVNTYLPKGDMWSVHKFGGTCMGTPKRIQCVANIVL 115
>AKH1_MAIZE (P49079) Bifunctional aspartokinase/homoserine dehydrogenase 1,| chloroplast precursor (AK-HD 1) (AK-HSDH 1) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] Length = 920 Score = 90.9 bits (224), Expect = 7e-19 Identities = 58/118 (49%), Positives = 66/118 (55%), Gaps = 9/118 (7%) Frame = +3 Query: 66 MRSLAVASPVPTAAAHRRR---LRPSASGRE-VISQCLKCEINQDRPLGALRLGGNLPR- 230 MRSL VAS P AA RR L P+A+GR+ +C + E QD G+ LPR Sbjct: 1 MRSLTVASRHPGAAFSTRRRPLLHPAAAGRDSTFQRCWRWEKTQDSSFGSSLRTSRLPRT 60 Query: 231 -HGS--KNLLTPXXXXXXXXXXXXTY-LPKGDMWSVHKFGGTCMGTPQRIQNVADVXL 392 HG KNLL P LPKGDMWSVHKFGGTCMGT +RI NVAD+ L Sbjct: 61 VHGDILKNLLAPTAGAVSVEQAEAIADLPKGDMWSVHKFGGTCMGTSERIHNVADIVL 118
>AKH_DAUCA (P37142) Bifunctional aspartokinase/homoserine dehydrogenase,| chloroplast precursor (AK-HD) (AK-HSDH) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] (Fragment) Length = 921 Score = 52.8 bits (125), Expect = 2e-07 Identities = 19/30 (63%), Positives = 28/30 (93%) Frame = +3 Query: 297 YLPKGDMWSVHKFGGTCMGTPQRIQNVADV 386 +LP+G MWS+HKFGGTC+G+ +RI+NVA++ Sbjct: 85 HLPRGAMWSIHKFGGTCVGSSERIRNVAEI 114
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 31.2 bits (69), Expect = 0.63 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -1 Query: 146 PAGGGRPEPPSMGGGCRDGARDGE 75 P GG RP+ GG RDG RDG+ Sbjct: 233 PGGGPRPQGQGRPGGQRDGQRDGQ 256
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 30.8 bits (68), Expect = 0.82 Identities = 18/43 (41%), Positives = 24/43 (55%) Frame = +3 Query: 9 RHSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPSA 137 R PP P R +SP R+ R L+ P+A+ RRR RPS+ Sbjct: 364 RSRSPPKKPPKRTSSPPRKTRRLS-----PSASPPRRRHRPSS 401
>LIPA2_HUMAN (O75334) Liprin-alpha-2 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein alpha-2) (PTPRF-interacting protein alpha-2) Length = 1257 Score = 30.8 bits (68), Expect = 0.82 Identities = 22/72 (30%), Positives = 29/72 (40%) Frame = +3 Query: 12 HSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPSASGREVISQCLKCEINQDR 191 HS P L P SP REM + V + HRR++ +KCE + Sbjct: 722 HSTPKLTPR----SPAREMDRMGVMTLPSDLRKHRRKIAVVEEDGREDKATIKCETSPPP 777 Query: 192 PLGALRLGGNLP 227 ALR+ LP Sbjct: 778 TPRALRMTHTLP 789
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/42 (42%), Positives = 23/42 (54%) Frame = +3 Query: 9 RHSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPS 134 R PP P R +SP R+ R L+ P+A+ RRR RPS Sbjct: 366 RSRSPPKKPPKRTSSPPRKTRRLS-----PSASPPRRRHRPS 402
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/42 (42%), Positives = 23/42 (54%) Frame = +3 Query: 9 RHSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPS 134 R PP P R +SP R+ R L+ P+A+ RRR RPS Sbjct: 366 RSRSPPKKPPKRTSSPPRKTRRLS-----PSASPPRRRHRPS 402
>NNMT_HUMAN (P40261) Nicotinamide N-methyltransferase (EC 2.1.1.1)| Length = 264 Score = 30.4 bits (67), Expect = 1.1 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = +3 Query: 144 REVISQCLKCEINQDRPLGALRL 212 R+ + Q LKC++ Q +PLGA+ L Sbjct: 132 RQAVKQVLKCDVTQSQPLGAVPL 154
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -1 Query: 143 AGGGRPEPPSMGGGCRDGARDGEAPH 66 A GG P+PP GGG G R AP+ Sbjct: 218 APGGHPKPPHRGGGEPRGGRQHHAPY 243
>CAPP_BURPS (Q63W75) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 994 Score = 29.6 bits (65), Expect = 1.8 Identities = 23/64 (35%), Positives = 29/64 (45%) Frame = +3 Query: 6 PRHSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPSASGREVISQCLKCEINQ 185 P H+EPP A RAA P R++ A PT AA +P RE ++ Sbjct: 21 PAHAEPP---ARRAAKPARKLDGAAARPLAPTNAA---SAKPQGRTRE----------DK 64 Query: 186 DRPL 197 DRPL Sbjct: 65 DRPL 68
>CAPP_BURMA (Q62LC1) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 994 Score = 29.6 bits (65), Expect = 1.8 Identities = 23/64 (35%), Positives = 29/64 (45%) Frame = +3 Query: 6 PRHSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPSASGREVISQCLKCEINQ 185 P H+EPP A RAA P R++ A PT AA +P RE ++ Sbjct: 21 PAHAEPP---ARRAAKPARKLDGAAARPLAPTNAA---SAKPQGRTRE----------DK 64 Query: 186 DRPL 197 DRPL Sbjct: 65 DRPL 68
>SRR1L_MOUSE (Q8K2M3) SRR1-like protein (Fragment)| Length = 243 Score = 29.6 bits (65), Expect = 1.8 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 23/84 (27%) Frame = +3 Query: 45 AASPRREMRSLAV---------ASPVPTAAAHRRRLRPS----------ASGREVISQCL 167 A +PRR R+ A P A RRLR + +S E I++CL Sbjct: 5 AVAPRRRKRAAGRRPRPGEGPRAEPDADGEAVLRRLREAEEDLRISDFCSSALETITECL 64 Query: 168 KCEINQDRP----LGALRLGGNLP 227 + ++ Q +P LG L LG +LP Sbjct: 65 RKQLEQLQPLTEALGRLHLGSSLP 88
>LIPA2_MOUSE (Q8BSS9) Liprin-alpha-2 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein alpha-2) (PTPRF-interacting protein alpha-2) Length = 1257 Score = 29.6 bits (65), Expect = 1.8 Identities = 21/72 (29%), Positives = 29/72 (40%) Frame = +3 Query: 12 HSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPSASGREVISQCLKCEINQDR 191 HS P L P SP REM + V + HRR++ +KCE + Sbjct: 722 HSTPKLTPR----SPAREMDRMGVMTLPSDLRKHRRKIAVVEEDGREDKATIKCETSPPP 777 Query: 192 PLGALRLGGNLP 227 A+R+ LP Sbjct: 778 TPRAVRMTHTLP 789
>AK_PSEAE (O69077) Aspartokinase (EC 2.7.2.4) (Aspartate kinase)| Length = 412 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = +3 Query: 324 VHKFGGTCMGTPQRIQNVAD 383 V KFGGT +GT +RI+ VA+ Sbjct: 5 VQKFGGTSVGTVERIEQVAE 24
>AK_HELPY (O25827) Aspartokinase (EC 2.7.2.4) (Aspartate kinase)| Length = 405 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +3 Query: 315 MWSVHKFGGTCMGTPQRIQNVA 380 M V K+GGT MG+ +RI NVA Sbjct: 1 MLIVQKYGGTSMGSIERIHNVA 22
>AK_HELPJ (Q9ZJZ7) Aspartokinase (EC 2.7.2.4) (Aspartate kinase)| Length = 405 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +3 Query: 315 MWSVHKFGGTCMGTPQRIQNVA 380 M V K+GGT MG+ +RI NVA Sbjct: 1 MLIVQKYGGTSMGSIERIHNVA 22
>NNMT_MOUSE (O55239) Nicotinamide N-methyltransferase (EC 2.1.1.1)| Length = 264 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 144 REVISQCLKCEINQDRPLGALRL 212 R I Q LKC++ Q +PLG + L Sbjct: 132 RRAIKQVLKCDVTQSQPLGGVSL 154
>AK2_BACST (P53553) Aspartokinase 2 (EC 2.7.2.4) (Aspartokinase II) (Aspartate| kinase 2) [Contains: Aspartokinase II alpha subunit; Aspartokinase II beta subunit] Length = 407 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/20 (60%), Positives = 17/20 (85%) Frame = +3 Query: 324 VHKFGGTCMGTPQRIQNVAD 383 V KFGGT +G+ +RIQ+VA+ Sbjct: 5 VQKFGGTSVGSIERIQHVAN 24
>PRAX_MOUSE (O55103) Periaxin| Length = 1391 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +3 Query: 57 RREMRSLAVASPVPTAAAHRRRLRPSASGREVISQ 161 RR +++ AV PVP A A RR P REV + Sbjct: 167 RRGLKAEAVKGPVPAAPARRRLQLPRLRVREVAEE 201
>PRAX_HUMAN (Q9BXM0) Periaxin| Length = 1461 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +3 Query: 57 RREMRSLAVASPVPTAAAHRRRLRPSASGREVISQ 161 RR +++ AV PVP A A RR P REV + Sbjct: 167 RRGLKAEAVKGPVPAAPARRRLQLPRLRVREVAEE 201
>DNAE2_BORPA (Q7W9W1) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1052 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%) Frame = +3 Query: 36 AFRAASPRREMRSLAVASPVPTAAAHRR----RLRPSASGREVISQCLKCE 176 A RA PR+ + +LA A + T A HRR + SA R+++ + + E Sbjct: 849 ARRAGLPRQALDALAAADALRTLAGHRRLASWQAAASAQSRDLLREAVIVE 899
>DNAE2_BORBR (Q7WHW8) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1052 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%) Frame = +3 Query: 36 AFRAASPRREMRSLAVASPVPTAAAHRR----RLRPSASGREVISQCLKCE 176 A RA PR+ + +LA A + T A HRR + SA R+++ + + E Sbjct: 849 ARRAGLPRQALDALAAADALRTLAGHRRLASWQAAASAQSRDLLREAVIVE 899
>LIP2_GEOCN (P22394) Lipase 2 precursor (EC 3.1.1.3) (Lipase II) (GCL II)| Length = 563 Score = 28.1 bits (61), Expect = 5.3 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%) Frame = +3 Query: 69 RSLAVASPVPTAAAHRRRLRPSASGREVISQCLKCEIN-------QDRPLGALRLGGNLP 227 +SL +A+ V A + RPS +G EVIS L+ +++ D PL LR P Sbjct: 4 KSLFLAAAVNLAGVLAQAPRPSLNGNEVISGVLEGKVDTFKGIPFADPPLNDLRFKHPQP 63 Query: 228 RHGS 239 GS Sbjct: 64 FTGS 67
>AK2_BACSG (Q59229) Aspartokinase 2 (EC 2.7.2.4) (Aspartokinase II) (Aspartate| kinase 2) [Contains: Aspartokinase II alpha subunit; Aspartokinase II beta subunit] Length = 411 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = +3 Query: 324 VHKFGGTCMGTPQRIQNVAD 383 V KFGGT +G+ +RI NVA+ Sbjct: 5 VQKFGGTSVGSVERILNVAN 24
>AK2_BACSU (P08495) Aspartokinase 2 (EC 2.7.2.4) (Aspartokinase II) (Aspartate| kinase 2) [Contains: Aspartokinase II alpha subunit; Aspartokinase II beta subunit] Length = 408 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/20 (55%), Positives = 16/20 (80%) Frame = +3 Query: 324 VHKFGGTCMGTPQRIQNVAD 383 V KFGGT +G+ ++IQN A+ Sbjct: 5 VQKFGGTSVGSVEKIQNAAN 24
>SKN1_CAEEL (P34707) Protein skinhead-1| Length = 623 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +3 Query: 42 RAASPRREMRSLAVASPVPTAAAHRRRLRPS 134 R++SPR S+ +A VP A+ R+R R S Sbjct: 519 RSSSPRSSQSSIKIARVVPLASGQRKRGRQS 549
>PRAX_RAT (Q63425) Periaxin| Length = 1383 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +3 Query: 57 RREMRSLAVASPVPTAAAHRRRLRPSASGREVISQ 161 RR +++ AV PVP A A RR P REV + Sbjct: 167 RRGLKADAVKGPVPAAPARRRLQLPRLRVREVAEE 201
>PLSB_PSEAE (Q9HXW7) Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) (GPAT)| Length = 834 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -3 Query: 237 NHVLANFLLTLELPKVGPDLSHTSNIVK 154 N +L L+ +GPDLSH N+VK Sbjct: 196 NRILRVHFRNLKTAVIGPDLSHRRNLVK 223
>RR1_PORPU (P51345) Chloroplast 30S ribosomal protein S1| Length = 263 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = +3 Query: 108 AHRRRLRPSASGREVISQCLKCEINQDRPLGALRLGGNL 224 +HRR L AS ++ ++ INQ P G GNL Sbjct: 176 SHRRALIAQASSNLIVGNIIEGVINQITPYGLFIKAGNL 214
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = -1 Query: 137 GGRPEPPSMGGGCRDGARDGEAPH 66 GG P+PP GGG G R P+ Sbjct: 228 GGHPKPPHRGGGEPRGGRQHHPPY 251
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -1 Query: 143 AGGGRPEPPSMGGGCRDGARDGEAP 69 AGGG P PP M GG + G G++P Sbjct: 621 AGGGYPMPPHMHGGYKMGG-PGQSP 644 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,498,986 Number of Sequences: 219361 Number of extensions: 893964 Number of successful extensions: 3056 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 2865 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3053 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
