ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl16a03 |
|---|---|
| Clone Library Name | barley_pub |
>TRAY4_ECOLI (P05836) Protein traY| Length = 75 Score = 32.3 bits (72), Expect = 0.30 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 4/47 (8%) Frame = +1 Query: 10 EIRKQKYLEALDKHDRSKAVEILVK---DLKVFASF-NEELFKEITQ 138 E + ++A D+ RSK +E+ ++ LK F F NEE+F+E+T+ Sbjct: 20 EDTNNRLIKAKDRSGRSKTIEVQIRLRDHLKRFPDFYNEEIFREVTE 66
>RGYR_METJA (Q58907) Reverse gyrase [Includes: Helicase (EC 3.6.1.-);| Topoisomerase (EC 5.99.1.3)] [Contains: Mja r-Gyr intein] Length = 1613 Score = 32.0 bits (71), Expect = 0.39 Identities = 31/130 (23%), Positives = 63/130 (48%), Gaps = 26/130 (20%) Frame = +1 Query: 7 FEIRKQKYLEALDKHDRSKAVEILVKDLKVFASFNEELFKEITQLLTLENF---RENEQ- 174 F+IR ++Y+ +L + K +D+ + EE+ + IT+ L ++NF +E+++ Sbjct: 405 FKIRLKEYINSLKEKGELK------EDINIEGKTEEEIRQIITEKLKIKNFSLRKEDDEY 458 Query: 175 -------------------LSKYGDTKSARAIMLVELKKLIEA---NPLFRDKLQFPNLE 288 ++++G TK A +I+LV+ K++ EA LF + +F ++ Sbjct: 459 LLLIPDVKTYIQASGRTSRMTEFGLTKGA-SIVLVDEKEIFEALKKYMLFMYESEFKRID 517 Query: 289 SSRLRTLINQ 318 L LI + Sbjct: 518 EVNLEELIKK 527
>PTPA2_CANGA (Q6FK00) Serine/threonine-protein phosphatase 2A activator 2 (EC| 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-2) (PPIase PTPA-2) (Rotamase PTPA-2) (Phosphotyrosyl phosphatase activator 2) Length = 358 Score = 30.8 bits (68), Expect = 0.87 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 3/65 (4%) Frame = +1 Query: 82 KDLKVF--ASFNEELFKEITQLLTLENFRENEQLSK-YGDTKSARAIMLVELKKLIEANP 252 KD+K++ + E++ I L EN+Q+S+ D+ + +L E+ KLI+ +P Sbjct: 11 KDVKIWEESETREDILSFIESLAKAVEGFENDQVSEPVSDSVQSTIAVLTEIDKLIKLHP 70 Query: 253 LFRDK 267 + +DK Sbjct: 71 VIQDK 75
>KAF1_SORBI (P14690) Kafirin PGK1 precursor| Length = 269 Score = 29.6 bits (65), Expect = 1.9 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = +1 Query: 217 LVELKKLIEANPLFRDKLQFPNLESSRLRTLINQSLNWQHQL 342 L+ + L+ ANPL LQ L S +L+N +L+WQ + Sbjct: 222 LLPVNPLVVANPLVAAFLQQQQLSSFNQISLVNPALSWQQPI 263
>KAF8_SORBI (P14692) Kafirin PSK8 precursor (Fragment)| Length = 267 Score = 29.6 bits (65), Expect = 1.9 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = +1 Query: 217 LVELKKLIEANPLFRDKLQFPNLESSRLRTLINQSLNWQHQL 342 L+ + L+ ANPL LQ L S +L+N +L+WQ + Sbjct: 220 LLPVNPLVVANPLVAAFLQQQQLSSFNQISLVNPALSWQQPI 261
>LONM_SCHPO (Q09769) Putative Lon protease homolog, mitochondrial precursor (EC| 3.4.21.-) Length = 1067 Score = 29.6 bits (65), Expect = 1.9 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 16/123 (13%) Frame = +1 Query: 22 QKYLEALDKHDR-SKAVEILVKDLKVFASFNEELFKEITQLLTL--ENFRENEQLS---- 180 Q+ LEA + DR KA+ +L K+L + A ++ KEI Q +T + + EQL Sbjct: 402 QEVLEATNIGDRLQKALYVLKKEL-LNAQLQHKINKEIEQKITQRHKEYLLTEQLKQIKR 460 Query: 181 KYGDTKSARAIMLVELKKLIEA-------NPLFRDKL-QFPNLESSRLRTLINQS-LNWQ 333 + G ++ ++ E KK E+ +F D+L +F +LE I ++ L+W Sbjct: 461 ELGQELDSKEALVTEFKKRTESLSMPDHVKKVFNDELSKFQHLEPMAAEFNITRNYLDWI 520 Query: 334 HQL 342 QL Sbjct: 521 TQL 523
>RAD50_METMA (Q8PUY4) DNA double-strand break repair rad50 ATPase| Length = 1070 Score = 29.3 bits (64), Expect = 2.5 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = +1 Query: 76 LVKDLKVFASFNEELFKEITQL-LTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANP 252 L + LK FA + +++ L LTLE R+NE+ +K +SAR +L E KKL +AN Sbjct: 730 LNEKLKAFAEKETQSKEKLEALELTLETARKNEEEAKKAHIESAR--LLGEAKKL-QANL 786 Query: 253 L 255 L Sbjct: 787 L 787
>V120_HHV7J (P52438) Capsid assembly protein U30| Length = 938 Score = 29.3 bits (64), Expect = 2.5 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Frame = +1 Query: 88 LKVFASFNEELFKEI--TQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFR 261 LK + F ++ + T L LENF N K ++ + KLIE + LF+ Sbjct: 679 LKEYIDFTKKCSSTLATTCYLNLENFAVNMYFGKNKVGSTSLSAFYRTCSKLIEESKLFK 738 Query: 262 DKLQ 273 D+LQ Sbjct: 739 DRLQ 742
>LRTM4_MOUSE (Q80XG9) Leucine-rich repeat transmembrane neuronal protein 4| precursor Length = 590 Score = 28.9 bits (63), Expect = 3.3 Identities = 11/15 (73%), Positives = 12/15 (80%) Frame = -1 Query: 88 SP*PGFQLPWTDHAY 44 SP PGFQ+P TDH Y Sbjct: 403 SPSPGFQIPGTDHEY 417
>RPOB_AQUPY (Q9X6Y1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1469 Score = 28.5 bits (62), Expect = 4.3 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%) Frame = +1 Query: 61 KAVEILVKDLKVFASFNEELFKEITQ--LLTLENFRENEQLSK 183 K V+I K++K EE+FKE +Q L ENF +E+L K Sbjct: 1072 KDVKIGKKEIKKGTEITEEIFKEYSQYILARPENFFTDEELIK 1114
>YML7_YEAST (Q03735) Hypothetical 126.1 kDa protein in NDI1-ATR1 intergenic| region Length = 1134 Score = 28.1 bits (61), Expect = 5.6 Identities = 15/44 (34%), Positives = 27/44 (61%) Frame = +1 Query: 196 KSARAIMLVELKKLIEANPLFRDKLQFPNLESSRLRTLINQSLN 327 K A +++E K +E + LF+ KLQF L+ S+ + I +S++ Sbjct: 347 KDATRSIIIEFKSPVEKSDLFKKKLQF--LDRSKNKRYILESID 388
>ENK11_HUMAN (P61566) HERV-K_22q11.21 provirus ancestral Env polyprotein| (Envelope polyprotein) (HERV-K101 envelope protein) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 588 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +1 Query: 235 LIEANPLFRDKLQFPNLESSRLRTLINQSLNWQHQL 342 L+ N + + Q E+ RL T I+ + NWQH++ Sbjct: 278 LVVGNIVIKPDSQTITCENCRLLTCIDSTFNWQHRI 313
>UGGG_SCHPO (Q09140) UDP-glucose:glycoprotein glucosyltransferase precursor (EC| 2.4.1.-) (UDP--Glc:glycoprotein glucosyltransferase) (UGT) Length = 1448 Score = 28.1 bits (61), Expect = 5.6 Identities = 24/76 (31%), Positives = 34/76 (44%) Frame = +1 Query: 100 ASFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFP 279 A FNE+ EI LL + LS+ D +ML++ K PLF L P Sbjct: 689 ADFNEKEGLEILSLLA-------DLLSENKDAN----LMLIQEGKNHVVPPLFAKLLSSP 737 Query: 280 NLESSRLRTLINQSLN 327 S L+ ++N SL+ Sbjct: 738 KRSSKHLQEILNSSLD 753
>ENK6_HUMAN (Q902F8) HERV-K_8p23.1 provirus ancestral Env polyprotein precursor| (Envelope polyprotein) (HERV-K115 envelope protein) (EnvK6 protein) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 699 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +1 Query: 235 LIEANPLFRDKLQFPNLESSRLRTLINQSLNWQHQL 342 L+ N + + Q E+ RL T I+ + NWQH++ Sbjct: 389 LVVGNIVIKPDSQTITCENCRLLTCIDSTFNWQHRI 424
>ENK5_HUMAN (Q902F9) HERV-K_19p13.11 provirus ancestral Env polyprotein| precursor (Envelope polyprotein) (HERV-K113 envelope protein) (EnvK5 protein) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 699 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +1 Query: 235 LIEANPLFRDKLQFPNLESSRLRTLINQSLNWQHQL 342 L+ N + + Q E+ RL T I+ + NWQH++ Sbjct: 389 LVVGNIVIKPDSQTITCENCRLLTCIDSTFNWQHRI 424
>ENK4_HUMAN (Q9UKH3) HERV-K_6q14.1 provirus ancestral Env polyprotein precursor| (Envelope polyprotein) (HERV-K109 envelope protein) (HERV-K(C6) envelope protein) (EnvK4 protein) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 698 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +1 Query: 235 LIEANPLFRDKLQFPNLESSRLRTLINQSLNWQHQL 342 L+ N + + Q E+ RL T I+ + NWQH++ Sbjct: 388 LVVGNIVIKPDSQTITCENCRLLTCIDSTFNWQHRI 423
>ENK3_HUMAN (O71037) HERV-K_19q12 provirus ancestral Env polyprotein precursor| (Envelope polyprotein) (HERV-K(C19) envelope protein) (EnvK3 protein) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 699 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +1 Query: 235 LIEANPLFRDKLQFPNLESSRLRTLINQSLNWQHQL 342 L+ N + + Q E+ RL T I+ + NWQH++ Sbjct: 389 LVVGNIVIKPDSQTITCENCRLLTCIDSTFNWQHRI 424
>ENK2_HUMAN (Q69384) HERV-K_7p22.1 provirus ancestral Env polyprotein precursor| (Envelope polyprotein) (HERV-K(HML-2.HOM) envelope protein) (HERV-K108 envelope protein) (HERV-K(C7) envelope protein) (EnvK2 protein) [Contains: Surface protein (SU); Transme Length = 699 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +1 Query: 235 LIEANPLFRDKLQFPNLESSRLRTLINQSLNWQHQL 342 L+ N + + Q E+ RL T I+ + NWQH++ Sbjct: 389 LVVGNIVIKPDSQTITCENCRLLTCIDSTFNWQHRI 424
>ENK1_HUMAN (P61565) HERV-K_12q14.1 provirus ancestral Env polyprotein| precursor (Envelope polyprotein) (EnvK1 protein) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 698 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +1 Query: 235 LIEANPLFRDKLQFPNLESSRLRTLINQSLNWQHQL 342 L+ N + + Q E+ RL T I+ + NWQH++ Sbjct: 388 LVVGNIVIKPDSQTITCENCRLLTCIDSTFNWQHRI 423
>POK12_HUMAN (P63135) HERV-K_1q22 provirus ancestral Pol protein (HERV-K102 Pol| protein) (HERV-K(III) Pol protein) [Includes: Reverse transcriptase (RT) (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4) (RNase H); Integrase (IN)] Length = 1459 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +1 Query: 235 LIEANPLFRDKLQFPNLESSRLRTLINQSLNWQHQL 342 L+ N + + Q E+ RL T I+ + NWQH++ Sbjct: 1149 LVVGNIVIKPDSQTITCENCRLLTCIDSTFNWQHRI 1184
>MOBA_AQUAE (O67413) Probable molybdopterin-guanine dinucleotide biosynthesis| protein A Length = 201 Score = 28.1 bits (61), Expect = 5.6 Identities = 22/66 (33%), Positives = 33/66 (50%) Frame = +1 Query: 46 KHDRSKAVEILVKDLKVFASFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVE 225 KH + + V +L DL L K+ T L LENF+E ++K T+ ++ V Sbjct: 93 KHAKEENVFVLSGDLP--------LMKKETVLYVLENFKEPVSVAK---TEKLHTLVGVY 141 Query: 226 LKKLIE 243 KKL+E Sbjct: 142 SKKLLE 147
>RL1_BACST (P04447) 50S ribosomal protein L1| Length = 232 Score = 28.1 bits (61), Expect = 5.6 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 10/87 (11%) Frame = +1 Query: 16 RKQKYLEALDKHDRSKAVEI-----LVKDLKVFASFNEELFKEITQLLTLENFRENEQLS 180 R +KYLEAL DRSKA I LVK V A F+ + E+ L ++ + ++Q+ Sbjct: 3 RGKKYLEALKLVDRSKAYPIAEAIELVKKTNV-AKFDATV--EVAFRLGVDPKKADQQIR 59 Query: 181 -----KYGDTKSARAIMLVELKKLIEA 246 +G K AR ++ + +K EA Sbjct: 60 GAVVLPHGTGKVARVLVFAKGEKAKEA 86
>ENK17_HUMAN (P61570) HERV-K_11q22.1 provirus ancestral Env polyprotein| precursor (Envelope polyprotein) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 661 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +1 Query: 235 LIEANPLFRDKLQFPNLESSRLRTLINQSLNWQHQL 342 L+ N + + Q E+ RL T I+ + NWQH++ Sbjct: 389 LVVGNIVIKPDSQTITCENCRLLTCIDSTFNWQHRI 424
>ENK10_HUMAN (P10267) HERV-K_5q33.3 provirus ancestral Env polyprotein (Envelope| polyprotein) (HERV-K10 envelope protein) (HERV-K107 envelope protein) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 587 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +1 Query: 235 LIEANPLFRDKLQFPNLESSRLRTLINQSLNWQHQL 342 L+ N + + Q E+ RL T I+ + NWQH++ Sbjct: 277 LVVGNIVIKPDSQTITCENCRLLTCIDSTFNWQHRI 312
>APOB_HUMAN (P04114) Apolipoprotein B-100 precursor (Apo B-100) [Contains:| Apolipoprotein B-48 (Apo B-48)] Length = 4563 Score = 27.7 bits (60), Expect = 7.3 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 8/98 (8%) Frame = +1 Query: 7 FEIRKQKYLEALDKHDRSKAVEILVKDLKVFASFNEELFKEITQLLTLENFRENEQLSKY 186 FE+RK K ++ + + L+KDL A +E+FK I L T E R + L ++ Sbjct: 4255 FELRKHKLIDVISMYRE------LLKDLSKEA---QEVFKAIQSLKTTEVLRNLQDLLQF 4305 Query: 187 ------GDTKSARAIMLVELKKLI--EANPLFRDKLQF 276 + K + + L I E N +F D + + Sbjct: 4306 IFQLIEDNIKQLKEMKFTYLINYIQDEINTIFNDYIPY 4343
>RL1_GEOKA (Q5L420) 50S ribosomal protein L1| Length = 233 Score = 27.7 bits (60), Expect = 7.3 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 10/87 (11%) Frame = +1 Query: 16 RKQKYLEALDKHDRSKAVEI-----LVKDLKVFASFNEELFKEITQLLTLENFRENEQLS 180 R +KYLEAL DRSKA I LVK + A F+ + E+ L ++ + ++Q+ Sbjct: 4 RGKKYLEALKLVDRSKAYPIAEAIELVKKTNI-AKFDATV--EVAFRLGVDPKKADQQIR 60 Query: 181 -----KYGDTKSARAIMLVELKKLIEA 246 +G K AR ++ + +K EA Sbjct: 61 GAVVLPHGTGKVARVLVFAKGEKAKEA 87
>GATB1_CLOAB (Q97FQ8) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B| 1 (EC 6.3.5.-) (Asp/Glu-ADT subunit B 1) Length = 476 Score = 27.7 bits (60), Expect = 7.3 Identities = 14/44 (31%), Positives = 27/44 (61%) Frame = +1 Query: 187 GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLESSRLRTLINQ 318 GD KSA ++ ++ K+++ N ++ + L+F + S L LIN+ Sbjct: 336 GDAKSASNWLMGDISKIMKENYVWIEDLKFTPEQLSELIKLINE 379
>ENK7_HUMAN (O42043) HERV-K_1q23.3 provirus ancestral Env polyprotein (Envelope| polyprotein) (HERV-K18 envelope protein) (HERV-K110 envelope protein) (IDDMK1,2 22 envelope protein) (HERV-K(C1a) envelope protein) (HERV-K18 superantigen) (IDDMK1,2 22 supera Length = 560 Score = 27.7 bits (60), Expect = 7.3 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +1 Query: 235 LIEANPLFRDKLQFPNLESSRLRTLINQSLNWQHQL 342 L+ N + + Q E+ RL T I+ + NWQH++ Sbjct: 278 LVVGNIVIKPASQTITCENCRLFTCIDSTFNWQHRI 313
>DPO3A_BUCBP (Q89AN8) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1077 Score = 27.7 bits (60), Expect = 7.3 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -3 Query: 158 KFSRVNSCVISLNSSSLKDANTFKSLTRIST 66 KFS +I++N+ SLKD N FK L T Sbjct: 579 KFSNNQKKLININTISLKDKNCFKFLQTAQT 609
>FABH_GRATL (Q6B945) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase III) (Beta-ketoacyl-ACP synthase III) (KAS III) Length = 330 Score = 27.7 bits (60), Expect = 7.3 Identities = 10/32 (31%), Positives = 21/32 (65%) Frame = +1 Query: 109 NEELFKEITQLLTLENFRENEQLSKYGDTKSA 204 N+ + + + L+++N++ LSKYG+T +A Sbjct: 258 NKRILQAVANRLSVDNYKIISNLSKYGNTSAA 289
>DNAA_BACFR (Q64PL4) Chromosomal replication initiator protein dnaA| Length = 476 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +1 Query: 220 VELKKLIEANPLFRDKLQFPNLESSRLRTLINQSL 324 VEL+K I N + RD LQFP+ + +N+S+ Sbjct: 300 VELRKNILRNKIHRDGLQFPSEVIDYIAENVNESV 334
>PPID_BUCAI (P57550) Peptidyl-prolyl cis-trans isomerase D (EC 5.2.1.8) (PPIase| D) (Rotamase D) Length = 623 Score = 27.3 bits (59), Expect = 9.6 Identities = 25/90 (27%), Positives = 38/90 (42%) Frame = +1 Query: 52 DRSKAVEILVKDLKVFASFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELK 231 +R K +IL K+ F S NE KE T L N L +Y + + +K Sbjct: 62 EREKQKKILGKNFFKF-SHNENFTKE-TYNYVLSQLINNVLLEQYAKNMNYLEVNDNTIK 119 Query: 232 KLIEANPLFRDKLQFPNLESSRLRTLINQS 321 K+I +P+F+ +F T IN + Sbjct: 120 KIIYNSPIFQKNNKFSKERYLNYLTSINST 149
>KINC_BACSU (P39764) Sporulation kinase C (EC 2.7.13.3)| Length = 428 Score = 27.3 bits (59), Expect = 9.6 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 23/106 (21%) Frame = +1 Query: 4 FFEIRKQKYLEALDKHD----RSKAVEILVKDLKVFASFN---------EELFKEITQLL 144 F +I K +Y + D D K +++++ +L + A E+ K++T LL Sbjct: 236 FLQIMKTQYPDRKDYFDIIFSEIKRIDLVLSELLLLAKPQAITFKTHQLNEILKQVTTLL 295 Query: 145 TL----------ENFRENEQLSKYGDTKSARAIMLVELKKLIEANP 252 +NF+E + GD + + + +K IEA P Sbjct: 296 DTNAILSNIVIEKNFKETDGCMINGDENQLKQVFINIIKNGIEAMP 341
>CLF1_DEBHA (Q6BSP7) Pre-mRNA-splicing factor CLF1| Length = 714 Score = 27.3 bits (59), Expect = 9.6 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Frame = +1 Query: 88 LKVFASFNEELFK----EITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEAN 249 LK F EE F+ E + T FRE K+ + K RA+++ K+ EAN Sbjct: 593 LKAFEESTEEEFEFSIDETHRETTRSVFREANDFFKHNNLKEDRAVVIEAWKQYEEAN 650
>TYRA_HAEIN (P43902) T-protein [Includes: Chorismate mutase (EC 5.4.99.5) (CM);| Prephenate dehydrogenase (EC 1.3.1.12) (PDH)] Length = 377 Score = 27.3 bits (59), Expect = 9.6 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Frame = +1 Query: 10 EIRKQKYLEAL---DKHDRSKAVEILVKDLKVFASFNEELFKEITQLLTLEN 156 E KQ Y EAL + +DR ++ K F ++E+ KE QLL N Sbjct: 321 ETLKQTYDEALTFFENNDRQGFIDAFHKVRDWFGDYSEQFLKESRQLLQQAN 372 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,028,871 Number of Sequences: 219361 Number of extensions: 634307 Number of successful extensions: 2026 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 1998 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2026 length of database: 80,573,946 effective HSP length: 90 effective length of database: 60,831,456 effective search space used: 1459954944 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
