Clone Name | bastl16a01 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_465022.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2847 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 345 taagatatttagctacagatgccaaacatgatttattttcatgggcagaatcacagtccc 404 |||||||| |||||||||||| ||||||||| ||| ||||||||||||||||||||||| Sbjct: 248 taagatatgcagctacagatgctaaacatgatatatattcatgggcagaatcacagtccc 307 Query: 405 tgcatc 410 |||||| Sbjct: 308 tgcatc 313 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 223 aagatcaaggcaaaggaacatatttcatctattaagtcatcgagaggtgtctcctcgaac 282 |||||| |||||||||||||| || |||||||| ||| |||||| | || |||||||| Sbjct: 126 aagatctaggcaaaggaacatcttcgatctattagctcagcgagagatttcccctcgaac 185 Query: 283 aaaacaccaagctaaaa 299 ||||||||||||||||| Sbjct: 186 aaaacaccaagctaaaa 202 Score = 46.1 bits (23), Expect = 0.090 Identities = 35/39 (89%) Strand = Plus / Plus Query: 121 aaggactgaaatggctgaaaattgggtagaaggctcaaa 159 |||| |||||||||||||| |||||| |||||| ||||| Sbjct: 39 aaggcctgaaatggctgaacattgggcagaaggttcaaa 77
>dbj|AK068360.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146O19, full insert sequence Length = 2842 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 345 taagatatttagctacagatgccaaacatgatttattttcatgggcagaatcacagtccc 404 |||||||| |||||||||||| ||||||||| ||| ||||||||||||||||||||||| Sbjct: 248 taagatatgcagctacagatgctaaacatgatatatattcatgggcagaatcacagtccc 307 Query: 405 tgcatc 410 |||||| Sbjct: 308 tgcatc 313 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 223 aagatcaaggcaaaggaacatatttcatctattaagtcatcgagaggtgtctcctcgaac 282 |||||| |||||||||||||| || |||||||| ||| |||||| | || |||||||| Sbjct: 126 aagatctaggcaaaggaacatcttcgatctattagctcagcgagagatttcccctcgaac 185 Query: 283 aaaacaccaagctaaaa 299 ||||||||||||||||| Sbjct: 186 aaaacaccaagctaaaa 202 Score = 46.1 bits (23), Expect = 0.090 Identities = 35/39 (89%) Strand = Plus / Plus Query: 121 aaggactgaaatggctgaaaattgggtagaaggctcaaa 159 |||| |||||||||||||| |||||| |||||| ||||| Sbjct: 39 aaggcctgaaatggctgaacattgggcagaaggttcaaa 77
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 56.0 bits (28), Expect = 9e-05 Identities = 43/48 (89%) Strand = Plus / Plus Query: 127 tgaaatggctgaaaattgggtagaaggctcaaaaaatacttctgctcc 174 ||||||| |||||| |||| |||||||||||||||| ||||| ||||| Sbjct: 7137022 tgaaatgactgaaagttggatagaaggctcaaaaaacacttcagctcc 7137069 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 247 tcatctattaagtcatcgagaggtgtctcctcgaacaaaacaccaagctaaaa 299 |||||||||| ||| || ||| | |||||||| ||||||||||||||||||| Sbjct: 7137235 tcatctattagctcaacgggagatctctcctcggacaaaacaccaagctaaaa 7137287
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 56.0 bits (28), Expect = 9e-05 Identities = 55/64 (85%) Strand = Plus / Minus Query: 236 aggaacatatttcatctattaagtcatcgagaggtgtctcctcgaacaaaacaccaagct 295 |||||||| || |||||||| ||| |||||| | || ||||||||||||||||||||| Sbjct: 10981765 aggaacatcttcgatctattagctcagcgagagatttcccctcgaacaaaacaccaagct 10981706 Query: 296 aaaa 299 |||| Sbjct: 10981705 aaaa 10981702 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 345 taagatatttagctacagatgccaaacatgatttattttcatgg 388 |||||||| |||||||||||| ||||||||| ||| ||||||| Sbjct: 10981656 taagatatgcagctacagatgctaaacatgatatatattcatgg 10981613 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Minus Query: 387 gggcagaatcacagtccctgcatc 410 |||||||||||||||||||||||| Sbjct: 10981383 gggcagaatcacagtccctgcatc 10981360 Score = 46.1 bits (23), Expect = 0.090 Identities = 35/39 (89%) Strand = Plus / Minus Query: 121 aaggactgaaatggctgaaaattgggtagaaggctcaaa 159 |||| |||||||||||||| |||||| |||||| ||||| Sbjct: 10982685 aaggcctgaaatggctgaacattgggcagaaggttcaaa 10982647
>dbj|AP004756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0592C05 Length = 150478 Score = 56.0 bits (28), Expect = 9e-05 Identities = 43/48 (89%) Strand = Plus / Plus Query: 127 tgaaatggctgaaaattgggtagaaggctcaaaaaatacttctgctcc 174 ||||||| |||||| |||| |||||||||||||||| ||||| ||||| Sbjct: 89101 tgaaatgactgaaagttggatagaaggctcaaaaaacacttcagctcc 89148 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 247 tcatctattaagtcatcgagaggtgtctcctcgaacaaaacaccaagctaaaa 299 |||||||||| ||| || ||| | |||||||| ||||||||||||||||||| Sbjct: 89314 tcatctattagctcaacgggagatctctcctcggacaaaacaccaagctaaaa 89366
>dbj|AP004212.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1086_G08 Length = 59883 Score = 56.0 bits (28), Expect = 9e-05 Identities = 55/64 (85%) Strand = Plus / Minus Query: 236 aggaacatatttcatctattaagtcatcgagaggtgtctcctcgaacaaaacaccaagct 295 |||||||| || |||||||| ||| |||||| | || ||||||||||||||||||||| Sbjct: 8428 aggaacatcttcgatctattagctcagcgagagatttcccctcgaacaaaacaccaagct 8369 Query: 296 aaaa 299 |||| Sbjct: 8368 aaaa 8365 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 345 taagatatttagctacagatgccaaacatgatttattttcatgg 388 |||||||| |||||||||||| ||||||||| ||| ||||||| Sbjct: 8319 taagatatgcagctacagatgctaaacatgatatatattcatgg 8276 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Minus Query: 387 gggcagaatcacagtccctgcatc 410 |||||||||||||||||||||||| Sbjct: 8046 gggcagaatcacagtccctgcatc 8023 Score = 46.1 bits (23), Expect = 0.090 Identities = 35/39 (89%) Strand = Plus / Minus Query: 121 aaggactgaaatggctgaaaattgggtagaaggctcaaa 159 |||| |||||||||||||| |||||| |||||| ||||| Sbjct: 9348 aaggcctgaaatggctgaacattgggcagaaggttcaaa 9310
>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1756_H07 Length = 217205 Score = 56.0 bits (28), Expect = 9e-05 Identities = 55/64 (85%) Strand = Plus / Minus Query: 236 aggaacatatttcatctattaagtcatcgagaggtgtctcctcgaacaaaacaccaagct 295 |||||||| || |||||||| ||| |||||| | || ||||||||||||||||||||| Sbjct: 187964 aggaacatcttcgatctattagctcagcgagagatttcccctcgaacaaaacaccaagct 187905 Query: 296 aaaa 299 |||| Sbjct: 187904 aaaa 187901 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 345 taagatatttagctacagatgccaaacatgatttattttcatgg 388 |||||||| |||||||||||| ||||||||| ||| ||||||| Sbjct: 187855 taagatatgcagctacagatgctaaacatgatatatattcatgg 187812 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Minus Query: 387 gggcagaatcacagtccctgcatc 410 |||||||||||||||||||||||| Sbjct: 187582 gggcagaatcacagtccctgcatc 187559 Score = 46.1 bits (23), Expect = 0.090 Identities = 35/39 (89%) Strand = Plus / Minus Query: 121 aaggactgaaatggctgaaaattgggtagaaggctcaaa 159 |||| |||||||||||||| |||||| |||||| ||||| Sbjct: 188884 aaggcctgaaatggctgaacattgggcagaaggttcaaa 188846
>dbj|AK072913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149F04, full insert sequence Length = 3217 Score = 56.0 bits (28), Expect = 9e-05 Identities = 43/48 (89%) Strand = Plus / Plus Query: 127 tgaaatggctgaaaattgggtagaaggctcaaaaaatacttctgctcc 174 ||||||| |||||| |||| |||||||||||||||| ||||| ||||| Sbjct: 270 tgaaatgactgaaagttggatagaaggctcaaaaaacacttcagctcc 317 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 247 tcatctattaagtcatcgagaggtgtctcctcgaacaaaacaccaagctaaaa 299 |||||||||| ||| || ||| | |||||||| ||||||||||||||||||| Sbjct: 390 tcatctattagctcaacgggagatctctcctcggacaaaacaccaagctaaaa 442
>gb|BC061706.1| Danio rerio pleckstrin, mRNA (cDNA clone MGC:66013 IMAGE:6793329), complete cds Length = 1963 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Plus Query: 278 cgaacaaaacaccaagctaaaag 300 ||||||||||||||||||||||| Sbjct: 1541 cgaacaaaacaccaagctaaaag 1563
>ref|NM_200841.1| Danio rerio pleckstrin (plek), mRNA Length = 1963 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Plus Query: 278 cgaacaaaacaccaagctaaaag 300 ||||||||||||||||||||||| Sbjct: 1541 cgaacaaaacaccaagctaaaag 1563
>gb|AC102372.8| Mus musculus chromosome 5, clone RP23-262J12, complete sequence Length = 212548 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 40 ccacccccgcaaccctaccgctcgct 65 ||||||||||||||||||| |||||| Sbjct: 46817 ccacccccgcaaccctacccctcgct 46792
>emb|AL139142.10| Human DNA sequence from clone RP3-436N22 on chromosome 1q24.1-25.3 Contains the PRDX6 gene for peroxiredoxin 6, gene MGC43026, a novel gene, the 3' end of a novel gene (FLJ45235) and two CpG islands, complete sequence Length = 159771 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 tctctctccacccccgcaacc 53 ||||||||||||||||||||| Sbjct: 134643 tctctctccacccccgcaacc 134623
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 gcttcaacaagaagatcaagg 232 ||||||||||||||||||||| Sbjct: 2674566 gcttcaacaagaagatcaagg 2674546
>dbj|AK127170.1| Homo sapiens cDNA FLJ45235 fis, clone BRCAN2025093 Length = 2670 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 tctctctccacccccgcaacc 53 ||||||||||||||||||||| Sbjct: 2230 tctctctccacccccgcaacc 2250
>ref|NM_198493.1| Homo sapiens ankyrin repeat domain 45 (ANKRD45), mRNA Length = 2670 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 tctctctccacccccgcaacc 53 ||||||||||||||||||||| Sbjct: 2230 tctctctccacccccgcaacc 2250
>emb|BX510959.9| Zebrafish DNA sequence from clone CH211-51A19 in linkage group 20, complete sequence Length = 179085 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 ctcaaaaaatacttctgctcc 174 ||||||||||||||||||||| Sbjct: 142705 ctcaaaaaatacttctgctcc 142725
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 gcttcaacaagaagatcaagg 232 ||||||||||||||||||||| Sbjct: 2695091 gcttcaacaagaagatcaagg 2695071
>gb|AC147648.4| Homo sapiens BAC clone RP11-1413M17 from UL, complete sequence Length = 188992 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 gaatataaaggactgaaatg 133 |||||||||||||||||||| Sbjct: 81772 gaatataaaggactgaaatg 81791
>gb|AC159963.7| Mus musculus chromosome 15, clone RP23-338F23, complete sequence Length = 228337 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 236 aggaacatatttcatctattaagt 259 |||||||||| ||||||||||||| Sbjct: 23904 aggaacatatgtcatctattaagt 23881
>gb|AY395814.1| Leptonycteris curasoae 12S ribosomal RNA gene, partial sequence; tRNA-Val gene, complete sequence; and 16S ribosomal RNA gene, partial sequence; mitochondrial Length = 2606 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gttttattttaggtgaatat 119 |||||||||||||||||||| Sbjct: 1101 gttttattttaggtgaatat 1082
>gb|AC145613.2| Homo sapiens BAC clone RP11-1266H24 from UL, complete sequence Length = 178925 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 gaatataaaggactgaaatg 133 |||||||||||||||||||| Sbjct: 58564 gaatataaaggactgaaatg 58583
>gb|AC130538.4| Mus musculus BAC clone RP23-450E2 from chromosome 7, complete sequence Length = 169082 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 ttttattttaggtgaatata 120 |||||||||||||||||||| Sbjct: 60915 ttttattttaggtgaatata 60896
>gb|AC127323.3| Mus musculus BAC clone RP23-242D19 from 18, complete sequence Length = 208152 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 ttattttaggtgaatataaa 122 |||||||||||||||||||| Sbjct: 167119 ttattttaggtgaatataaa 167138
>ref|XM_662363.1| Cryptosporidium hominis TU502 adapter-related protein complex 2 alpha 1 subunit (Chro.60242) partial mRNA Length = 3294 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 gttttattttaggtgaatat 119 |||||||||||||||||||| Sbjct: 1916 gttttattttaggtgaatat 1935
>emb|CR642886.2|CNS0EV0S Tetraodon nigroviridis full-length cDNA Length = 1118 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 cttctgctccgacgtcattctctg 188 ||||||||| |||||||||||||| Sbjct: 30 cttctgctcagacgtcattctctg 53
>emb|CR854897.8| Zebrafish DNA sequence from clone DKEY-121N8 in linkage group 15, complete sequence Length = 185286 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 caaacatgatttattttcat 386 |||||||||||||||||||| Sbjct: 168907 caaacatgatttattttcat 168926
>emb|AL031734.9|HS652L8 Human DNA sequence from clone RP4-652L8 on chromosome 1q24.1-25.2 Contains a novel gene, the 5' end of the PLAC3 gene for placenta-specific 3 (PLAC3) and a protein tyrosine phosphatase type IVA (member 1) (PTP4A1) pseudogene, complete sequence Length = 168835 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 aaaggcattggaataagcct 316 |||||||||||||||||||| Sbjct: 158151 aaaggcattggaataagcct 158132
>emb|BX538351.1| Cryptosporidium parvum chromosome 6, complete sequence; segment 2/4 Length = 307050 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gttttattttaggtgaatat 119 |||||||||||||||||||| Sbjct: 53458 gttttattttaggtgaatat 53439
>gb|AC010941.6| Homo sapiens chromosome 8, clone RP11-115C6, complete sequence Length = 166129 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 acatatttcatctattaagt 259 |||||||||||||||||||| Sbjct: 60139 acatatttcatctattaagt 60120
>gb|AC098935.2| Homo sapiens chromosome 1 clone RP11-564A8, complete sequence Length = 192565 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 aacatatttcatctattaag 258 |||||||||||||||||||| Sbjct: 2165 aacatatttcatctattaag 2184
>gb|AC090875.9| Homo sapiens chromosome 8, clone RP11-724H22, complete sequence Length = 165505 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 acatatttcatctattaagt 259 |||||||||||||||||||| Sbjct: 39941 acatatttcatctattaagt 39960
>ref|XM_627567.1| Cryptosporidium parvum Iowa II adaptin AP complex subunit alpha; ARM repeats (cgd6_2070), partial mRNA Length = 3321 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 gttttattttaggtgaatat 119 |||||||||||||||||||| Sbjct: 1946 gttttattttaggtgaatat 1965
>gb|AC155297.2| Mus musculus BAC clone RP24-238D1 from chromosome 13, complete sequence Length = 174487 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 tattttaggtgaatataaaggact 127 |||||||||| ||||||||||||| Sbjct: 69792 tattttaggtaaatataaaggact 69769
>gb|AC140366.2| Mus musculus BAC clone RP24-225H21 from chromosome 7, complete sequence Length = 145270 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 ttttattttaggtgaatata 120 |||||||||||||||||||| Sbjct: 111049 ttttattttaggtgaatata 111030
>gb|AC004664.1|AC004664 Homo sapiens chromosome 4 clone C0500H20 map 4p16, complete sequence Length = 172072 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 ggcagaatcacagtccctgc 407 |||||||||||||||||||| Sbjct: 89226 ggcagaatcacagtccctgc 89207 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,211,177 Number of Sequences: 3902068 Number of extensions: 4211177 Number of successful extensions: 84143 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83938 Number of HSP's gapped (non-prelim): 205 length of query: 416 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 394 effective length of database: 17,147,199,772 effective search space: 6755996710168 effective search space used: 6755996710168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)