ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl16a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_465022.1| Oryza sativa (japonica cultivar-group), mRNA 92 2e-15
2dbj|AK068360.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
5dbj|AP004756.2| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
6dbj|AP004212.3| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
7dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
8dbj|AK072913.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
9gb|BC061706.1| Danio rerio pleckstrin, mRNA (cDNA clone MGC:6601... 46 0.090
10ref|NM_200841.1| Danio rerio pleckstrin (plek), mRNA 46 0.090
11gb|AC102372.8| Mus musculus chromosome 5, clone RP23-262J12, com... 44 0.36
12emb|AL139142.10| Human DNA sequence from clone RP3-436N22 on chr... 42 1.4
13dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 42 1.4
14dbj|AK127170.1| Homo sapiens cDNA FLJ45235 fis, clone BRCAN2025093 42 1.4
15ref|NM_198493.1| Homo sapiens ankyrin repeat domain 45 (ANKRD45)... 42 1.4
16emb|BX510959.9| Zebrafish DNA sequence from clone CH211-51A19 in... 42 1.4
17gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 42 1.4
18gb|AC147648.4| Homo sapiens BAC clone RP11-1413M17 from UL, comp... 40 5.6
19gb|AC159963.7| Mus musculus chromosome 15, clone RP23-338F23, co... 40 5.6
20gb|AY395814.1| Leptonycteris curasoae 12S ribosomal RNA gene, pa... 40 5.6
21gb|AC145613.2| Homo sapiens BAC clone RP11-1266H24 from UL, comp... 40 5.6
22gb|AC130538.4| Mus musculus BAC clone RP23-450E2 from chromosome... 40 5.6
23gb|AC127323.3| Mus musculus BAC clone RP23-242D19 from 18, compl... 40 5.6
24ref|XM_662363.1| Cryptosporidium hominis TU502 adapter-related p... 40 5.6
25emb|CR642886.2|CNS0EV0S Tetraodon nigroviridis full-length cDNA 40 5.6
26emb|CR854897.8| Zebrafish DNA sequence from clone DKEY-121N8 in ... 40 5.6
27emb|AL031734.9|HS652L8 Human DNA sequence from clone RP4-652L8 o... 40 5.6
28emb|BX538351.1| Cryptosporidium parvum chromosome 6, complete se... 40 5.6
29gb|AC010941.6| Homo sapiens chromosome 8, clone RP11-115C6, comp... 40 5.6
30gb|AC098935.2| Homo sapiens chromosome 1 clone RP11-564A8, compl... 40 5.6
31gb|AC090875.9| Homo sapiens chromosome 8, clone RP11-724H22, com... 40 5.6
32ref|XM_627567.1| Cryptosporidium parvum Iowa II adaptin AP compl... 40 5.6
33gb|AC155297.2| Mus musculus BAC clone RP24-238D1 from chromosome... 40 5.6
34gb|AC140366.2| Mus musculus BAC clone RP24-225H21 from chromosom... 40 5.6
35gb|AC004664.1|AC004664 Homo sapiens chromosome 4 clone C0500H20 ... 40 5.6

>ref|XM_465022.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2847

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 61/66 (92%)
 Strand = Plus / Plus

                                                                       
Query: 345 taagatatttagctacagatgccaaacatgatttattttcatgggcagaatcacagtccc 404
           ||||||||  |||||||||||| ||||||||| ||| |||||||||||||||||||||||
Sbjct: 248 taagatatgcagctacagatgctaaacatgatatatattcatgggcagaatcacagtccc 307

                 
Query: 405 tgcatc 410
           ||||||
Sbjct: 308 tgcatc 313



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                       
Query: 223 aagatcaaggcaaaggaacatatttcatctattaagtcatcgagaggtgtctcctcgaac 282
           |||||| |||||||||||||| ||  ||||||||  ||| |||||| | || ||||||||
Sbjct: 126 aagatctaggcaaaggaacatcttcgatctattagctcagcgagagatttcccctcgaac 185

                            
Query: 283 aaaacaccaagctaaaa 299
           |||||||||||||||||
Sbjct: 186 aaaacaccaagctaaaa 202



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 121 aaggactgaaatggctgaaaattgggtagaaggctcaaa 159
           |||| |||||||||||||| |||||| |||||| |||||
Sbjct: 39  aaggcctgaaatggctgaacattgggcagaaggttcaaa 77



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>dbj|AK068360.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146O19, full
           insert sequence
          Length = 2842

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 61/66 (92%)
 Strand = Plus / Plus

                                                                       
Query: 345 taagatatttagctacagatgccaaacatgatttattttcatgggcagaatcacagtccc 404
           ||||||||  |||||||||||| ||||||||| ||| |||||||||||||||||||||||
Sbjct: 248 taagatatgcagctacagatgctaaacatgatatatattcatgggcagaatcacagtccc 307

                 
Query: 405 tgcatc 410
           ||||||
Sbjct: 308 tgcatc 313



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                       
Query: 223 aagatcaaggcaaaggaacatatttcatctattaagtcatcgagaggtgtctcctcgaac 282
           |||||| |||||||||||||| ||  ||||||||  ||| |||||| | || ||||||||
Sbjct: 126 aagatctaggcaaaggaacatcttcgatctattagctcagcgagagatttcccctcgaac 185

                            
Query: 283 aaaacaccaagctaaaa 299
           |||||||||||||||||
Sbjct: 186 aaaacaccaagctaaaa 202



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 121 aaggactgaaatggctgaaaattgggtagaaggctcaaa 159
           |||| |||||||||||||| |||||| |||||| |||||
Sbjct: 39  aaggcctgaaatggctgaacattgggcagaaggttcaaa 77



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                               
Query: 127     tgaaatggctgaaaattgggtagaaggctcaaaaaatacttctgctcc 174
               ||||||| |||||| |||| |||||||||||||||| ||||| |||||
Sbjct: 7137022 tgaaatgactgaaagttggatagaaggctcaaaaaacacttcagctcc 7137069



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                    
Query: 247     tcatctattaagtcatcgagaggtgtctcctcgaacaaaacaccaagctaaaa 299
               ||||||||||  ||| || ||| | |||||||| |||||||||||||||||||
Sbjct: 7137235 tcatctattagctcaacgggagatctctcctcggacaaaacaccaagctaaaa 7137287



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                            
Query: 236      aggaacatatttcatctattaagtcatcgagaggtgtctcctcgaacaaaacaccaagct 295
                |||||||| ||  ||||||||  ||| |||||| | || |||||||||||||||||||||
Sbjct: 10981765 aggaacatcttcgatctattagctcagcgagagatttcccctcgaacaaaacaccaagct 10981706

                    
Query: 296      aaaa 299
                ||||
Sbjct: 10981705 aaaa 10981702



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                            
Query: 345      taagatatttagctacagatgccaaacatgatttattttcatgg 388
                ||||||||  |||||||||||| ||||||||| ||| |||||||
Sbjct: 10981656 taagatatgcagctacagatgctaaacatgatatatattcatgg 10981613



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 387      gggcagaatcacagtccctgcatc 410
                ||||||||||||||||||||||||
Sbjct: 10981383 gggcagaatcacagtccctgcatc 10981360



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                       
Query: 121      aaggactgaaatggctgaaaattgggtagaaggctcaaa 159
                |||| |||||||||||||| |||||| |||||| |||||
Sbjct: 10982685 aaggcctgaaatggctgaacattgggcagaaggttcaaa 10982647



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>dbj|AP004756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0592C05
          Length = 150478

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                             
Query: 127   tgaaatggctgaaaattgggtagaaggctcaaaaaatacttctgctcc 174
             ||||||| |||||| |||| |||||||||||||||| ||||| |||||
Sbjct: 89101 tgaaatgactgaaagttggatagaaggctcaaaaaacacttcagctcc 89148



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                  
Query: 247   tcatctattaagtcatcgagaggtgtctcctcgaacaaaacaccaagctaaaa 299
             ||||||||||  ||| || ||| | |||||||| |||||||||||||||||||
Sbjct: 89314 tcatctattagctcaacgggagatctctcctcggacaaaacaccaagctaaaa 89366



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>dbj|AP004212.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1086_G08
          Length = 59883

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                        
Query: 236  aggaacatatttcatctattaagtcatcgagaggtgtctcctcgaacaaaacaccaagct 295
            |||||||| ||  ||||||||  ||| |||||| | || |||||||||||||||||||||
Sbjct: 8428 aggaacatcttcgatctattagctcagcgagagatttcccctcgaacaaaacaccaagct 8369

                
Query: 296  aaaa 299
            ||||
Sbjct: 8368 aaaa 8365



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 345  taagatatttagctacagatgccaaacatgatttattttcatgg 388
            ||||||||  |||||||||||| ||||||||| ||| |||||||
Sbjct: 8319 taagatatgcagctacagatgctaaacatgatatatattcatgg 8276



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 387  gggcagaatcacagtccctgcatc 410
            ||||||||||||||||||||||||
Sbjct: 8046 gggcagaatcacagtccctgcatc 8023



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 121  aaggactgaaatggctgaaaattgggtagaaggctcaaa 159
            |||| |||||||||||||| |||||| |||||| |||||
Sbjct: 9348 aaggcctgaaatggctgaacattgggcagaaggttcaaa 9310



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>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1756_H07
          Length = 217205

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                          
Query: 236    aggaacatatttcatctattaagtcatcgagaggtgtctcctcgaacaaaacaccaagct 295
              |||||||| ||  ||||||||  ||| |||||| | || |||||||||||||||||||||
Sbjct: 187964 aggaacatcttcgatctattagctcagcgagagatttcccctcgaacaaaacaccaagct 187905

                  
Query: 296    aaaa 299
              ||||
Sbjct: 187904 aaaa 187901



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                          
Query: 345    taagatatttagctacagatgccaaacatgatttattttcatgg 388
              ||||||||  |||||||||||| ||||||||| ||| |||||||
Sbjct: 187855 taagatatgcagctacagatgctaaacatgatatatattcatgg 187812



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 387    gggcagaatcacagtccctgcatc 410
              ||||||||||||||||||||||||
Sbjct: 187582 gggcagaatcacagtccctgcatc 187559



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                     
Query: 121    aaggactgaaatggctgaaaattgggtagaaggctcaaa 159
              |||| |||||||||||||| |||||| |||||| |||||
Sbjct: 188884 aaggcctgaaatggctgaacattgggcagaaggttcaaa 188846



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>dbj|AK072913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149F04, full
           insert sequence
          Length = 3217

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                           
Query: 127 tgaaatggctgaaaattgggtagaaggctcaaaaaatacttctgctcc 174
           ||||||| |||||| |||| |||||||||||||||| ||||| |||||
Sbjct: 270 tgaaatgactgaaagttggatagaaggctcaaaaaacacttcagctcc 317



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                
Query: 247 tcatctattaagtcatcgagaggtgtctcctcgaacaaaacaccaagctaaaa 299
           ||||||||||  ||| || ||| | |||||||| |||||||||||||||||||
Sbjct: 390 tcatctattagctcaacgggagatctctcctcggacaaaacaccaagctaaaa 442



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>gb|BC061706.1| Danio rerio pleckstrin, mRNA (cDNA clone MGC:66013 IMAGE:6793329),
            complete cds
          Length = 1963

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 278  cgaacaaaacaccaagctaaaag 300
            |||||||||||||||||||||||
Sbjct: 1541 cgaacaaaacaccaagctaaaag 1563



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>ref|NM_200841.1| Danio rerio pleckstrin (plek), mRNA
          Length = 1963

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 278  cgaacaaaacaccaagctaaaag 300
            |||||||||||||||||||||||
Sbjct: 1541 cgaacaaaacaccaagctaaaag 1563



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>gb|AC102372.8| Mus musculus chromosome 5, clone RP23-262J12, complete sequence
          Length = 212548

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 40    ccacccccgcaaccctaccgctcgct 65
             ||||||||||||||||||| ||||||
Sbjct: 46817 ccacccccgcaaccctacccctcgct 46792



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>emb|AL139142.10| Human DNA sequence from clone RP3-436N22 on chromosome 1q24.1-25.3
              Contains the PRDX6 gene for peroxiredoxin 6, gene MGC43026,
              a novel gene, the 3' end of a novel gene (FLJ45235) and two
              CpG islands, complete sequence
          Length = 159771

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 33     tctctctccacccccgcaacc 53
              |||||||||||||||||||||
Sbjct: 134643 tctctctccacccccgcaacc 134623



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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 212     gcttcaacaagaagatcaagg 232
               |||||||||||||||||||||
Sbjct: 2674566 gcttcaacaagaagatcaagg 2674546



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>dbj|AK127170.1| Homo sapiens cDNA FLJ45235 fis, clone BRCAN2025093
          Length = 2670

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 33   tctctctccacccccgcaacc 53
            |||||||||||||||||||||
Sbjct: 2230 tctctctccacccccgcaacc 2250



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>ref|NM_198493.1| Homo sapiens ankyrin repeat domain 45 (ANKRD45), mRNA
          Length = 2670

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 33   tctctctccacccccgcaacc 53
            |||||||||||||||||||||
Sbjct: 2230 tctctctccacccccgcaacc 2250



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>emb|BX510959.9| Zebrafish DNA sequence from clone CH211-51A19 in linkage group 20,
              complete sequence
          Length = 179085

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 154    ctcaaaaaatacttctgctcc 174
              |||||||||||||||||||||
Sbjct: 142705 ctcaaaaaatacttctgctcc 142725



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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 212     gcttcaacaagaagatcaagg 232
               |||||||||||||||||||||
Sbjct: 2695091 gcttcaacaagaagatcaagg 2695071



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>gb|AC147648.4| Homo sapiens BAC clone RP11-1413M17 from UL, complete sequence
          Length = 188992

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   gaatataaaggactgaaatg 133
             ||||||||||||||||||||
Sbjct: 81772 gaatataaaggactgaaatg 81791



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>gb|AC159963.7| Mus musculus chromosome 15, clone RP23-338F23, complete sequence
          Length = 228337

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 236   aggaacatatttcatctattaagt 259
             |||||||||| |||||||||||||
Sbjct: 23904 aggaacatatgtcatctattaagt 23881



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>gb|AY395814.1| Leptonycteris curasoae 12S ribosomal RNA gene, partial sequence;
            tRNA-Val gene, complete sequence; and 16S ribosomal RNA
            gene, partial sequence; mitochondrial
          Length = 2606

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  gttttattttaggtgaatat 119
            ||||||||||||||||||||
Sbjct: 1101 gttttattttaggtgaatat 1082



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>gb|AC145613.2| Homo sapiens BAC clone RP11-1266H24 from UL, complete sequence
          Length = 178925

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   gaatataaaggactgaaatg 133
             ||||||||||||||||||||
Sbjct: 58564 gaatataaaggactgaaatg 58583



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>gb|AC130538.4| Mus musculus BAC clone RP23-450E2 from chromosome 7, complete sequence
          Length = 169082

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   ttttattttaggtgaatata 120
             ||||||||||||||||||||
Sbjct: 60915 ttttattttaggtgaatata 60896



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>gb|AC127323.3| Mus musculus BAC clone RP23-242D19 from 18, complete sequence
          Length = 208152

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 103    ttattttaggtgaatataaa 122
              ||||||||||||||||||||
Sbjct: 167119 ttattttaggtgaatataaa 167138



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>ref|XM_662363.1| Cryptosporidium hominis TU502 adapter-related protein complex 2 alpha
            1 subunit (Chro.60242) partial mRNA
          Length = 3294

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 100  gttttattttaggtgaatat 119
            ||||||||||||||||||||
Sbjct: 1916 gttttattttaggtgaatat 1935



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>emb|CR642886.2|CNS0EV0S Tetraodon nigroviridis full-length cDNA
          Length = 1118

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 165 cttctgctccgacgtcattctctg 188
           ||||||||| ||||||||||||||
Sbjct: 30  cttctgctcagacgtcattctctg 53



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>emb|CR854897.8| Zebrafish DNA sequence from clone DKEY-121N8 in linkage group 15,
              complete sequence
          Length = 185286

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 367    caaacatgatttattttcat 386
              ||||||||||||||||||||
Sbjct: 168907 caaacatgatttattttcat 168926



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>emb|AL031734.9|HS652L8 Human DNA sequence from clone RP4-652L8 on chromosome 1q24.1-25.2
              Contains a novel gene, the 5' end of the PLAC3 gene for
              placenta-specific 3 (PLAC3) and a protein tyrosine
              phosphatase type IVA (member 1) (PTP4A1) pseudogene,
              complete sequence
          Length = 168835

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 297    aaaggcattggaataagcct 316
              ||||||||||||||||||||
Sbjct: 158151 aaaggcattggaataagcct 158132



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>emb|BX538351.1| Cryptosporidium parvum chromosome 6, complete sequence; segment 2/4
          Length = 307050

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   gttttattttaggtgaatat 119
             ||||||||||||||||||||
Sbjct: 53458 gttttattttaggtgaatat 53439



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>gb|AC010941.6| Homo sapiens chromosome 8, clone RP11-115C6, complete sequence
          Length = 166129

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   acatatttcatctattaagt 259
             ||||||||||||||||||||
Sbjct: 60139 acatatttcatctattaagt 60120



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>gb|AC098935.2| Homo sapiens chromosome 1 clone RP11-564A8, complete sequence
          Length = 192565

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 239  aacatatttcatctattaag 258
            ||||||||||||||||||||
Sbjct: 2165 aacatatttcatctattaag 2184



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>gb|AC090875.9| Homo sapiens chromosome 8, clone RP11-724H22, complete sequence
          Length = 165505

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   acatatttcatctattaagt 259
             ||||||||||||||||||||
Sbjct: 39941 acatatttcatctattaagt 39960



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>ref|XM_627567.1| Cryptosporidium parvum Iowa II adaptin AP complex subunit alpha; ARM
            repeats (cgd6_2070), partial mRNA
          Length = 3321

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 100  gttttattttaggtgaatat 119
            ||||||||||||||||||||
Sbjct: 1946 gttttattttaggtgaatat 1965



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>gb|AC155297.2| Mus musculus BAC clone RP24-238D1 from chromosome 13, complete sequence
          Length = 174487

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 104   tattttaggtgaatataaaggact 127
             |||||||||| |||||||||||||
Sbjct: 69792 tattttaggtaaatataaaggact 69769



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>gb|AC140366.2| Mus musculus BAC clone RP24-225H21 from chromosome 7, complete sequence
          Length = 145270

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 101    ttttattttaggtgaatata 120
              ||||||||||||||||||||
Sbjct: 111049 ttttattttaggtgaatata 111030



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>gb|AC004664.1|AC004664 Homo sapiens chromosome 4 clone C0500H20 map 4p16, complete sequence
          Length = 172072

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 388   ggcagaatcacagtccctgc 407
             ||||||||||||||||||||
Sbjct: 89226 ggcagaatcacagtccctgc 89207


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,211,177
Number of Sequences: 3902068
Number of extensions: 4211177
Number of successful extensions: 84143
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83938
Number of HSP's gapped (non-prelim): 205
length of query: 416
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 394
effective length of database: 17,147,199,772
effective search space: 6755996710168
effective search space used: 6755996710168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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