>LONH2_MAIZE (P93648) Lon protease homolog 2, mitochondrial precursor (EC|
           3.4.21.-)
          Length = 964

 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 28/34 (82%), Gaps = 1/34 (2%)
 Frame = +2

Query: 191 EEMRSPLLRVFGSLRGGRSSV-MGRRARFCSSFS 289
           EE+RSPLLRV G+LR GR SV +GRR RFCS+ S
Sbjct: 10  EELRSPLLRVIGTLRDGRGSVLLGRRVRFCSNSS 43

>YM44_CAEEL (P34520) Hypothetical protein K11H3.4|
          Length = 717

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 10/23 (43%), Positives = 19/23 (82%)
 Frame = -3

Query: 75  DEQPRMCGRRALPFWFGEEERKE 7
           DE+    G+R+LPF++G+E++K+
Sbjct: 572 DEKRLTVGKRSLPFYYGDEDKKK 594

>RT03_PETHY (Q04716) Mitochondrial ribosomal protein S3|
          Length = 562

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 4   SFLSFFFPKPERQSTPPAHPRLLVQTLESHRPTV 105
           +   FFFPK  R   P +H  LL +TL + RP++
Sbjct: 203 NLFKFFFPKKSRSDRPTSH--LLKRTLPAVRPSL 234

>RPGR1_BOVIN (Q9GLM3) X-linked retinitis pigmentosa GTPase regulator-interacting|
           protein 1 (RPGR-interacting protein 1)
          Length = 1221

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 10  LSFFFPKPERQSTPPAHPRLLVQTLE 87
           +S F   P+RQS P  HP L  +T++
Sbjct: 410 ISTFSQSPDRQSAPATHPALFQETIQ 435

>SETBP_MOUSE (Q9Z180) SET-binding protein (SEB)|
          Length = 1535

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 276 QKRARLPITELRPPLSDPKT 217
           +KR R P TEL PP  +PKT
Sbjct: 669 KKRGRKPRTELPPPSEEPKT 688


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,059,379
Number of Sequences: 219361
Number of extensions: 350546
Number of successful extensions: 1342
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)