>RECO_RHOPA (Q6N6B8) DNA repair protein recO (Recombination protein O)|
          Length = 250

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = -3

Query: 267 VEATSSAHHRHLGALRGGRSSIPKRRRPSAAVPPLMLAAY-SLMENAAAAMDAGSTRFLG 91
           VE  +  H RHLG +RGG S+   R RP       +LA++ + ++         +T+   
Sbjct: 22  VELLTRGHGRHLGMVRGGASA---RMRPLLQPGNSVLASWRARLDEHLGYYQLEATKMRA 78

Query: 90  ANLRPISHRVW 58
           A L   SH V+
Sbjct: 79  ATLLGSSHAVY 89

>K22O_HUMAN (Q01546) Keratin, type II cytoskeletal 2 oral (Cytokeratin-2P)|
           (K2P) (CK 2P)
          Length = 638

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/49 (40%), Positives = 22/49 (44%)
 Frame = +1

Query: 145 GVCGEHEGRDGSGGAASLWNRGSPSSQGAEVPVVGGRGRLHLGSCSSCG 291
           G CG   G  GS G+ SL+N GS  S    V     R     G  SSCG
Sbjct: 42  GACGFRSGA-GSFGSRSLYNLGSNKSISISVAAGSSRAGGFGGGRSSCG 89

>PG54_MYCTU (O53553) Hypothetical PE-PGRS family protein PE_PGRS54 precursor|
          Length = 1901

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +1

Query: 145 GVCGEHEGRDGSGGAASLWNRGSPSSQGAEVPVVGGRG 258
           G  G      G GG A LW  G P   G      GG G
Sbjct: 142 GAAGAPGQAGGPGGPAGLWGNGGPGGAGGSGGGTGGAG 179

>VIGLN_RAT (Q9Z1A6) Vigilin (High density lipoprotein-binding protein)|
           (HDL-binding protein)
          Length = 1268

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 221 EEGDPRFQRDAAPPLPSRPSC 159
           EE DP   +DA PPLP + +C
Sbjct: 33  EESDPPTYKDAFPPLPEKAAC 53

>VIGLN_MOUSE (Q8VDJ3) Vigilin (High density lipoprotein-binding protein)|
           (HDL-binding protein)
          Length = 1268

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 221 EEGDPRFQRDAAPPLPSRPSC 159
           EE DP   +DA PPLP + +C
Sbjct: 33  EENDPPTYKDAFPPLPEKAAC 53

>VIGLN_HUMAN (Q00341) Vigilin (High density lipoprotein-binding protein)|
           (HDL-binding protein)
          Length = 1268

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 221 EEGDPRFQRDAAPPLPSRPSC 159
           EE DP   +DA PPLP + +C
Sbjct: 33  EESDPPTYKDAFPPLPEKAAC 53

>RECO_RHILO (Q985A3) DNA repair protein recO (Recombination protein O)|
          Length = 253

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 267 VEATSSAHHRHLGALRGGRS 208
           +E  + AH RHLG +RGGRS
Sbjct: 22  LEVMTRAHGRHLGLVRGGRS 41

>GATB_CORGL (Q8NR05) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B|
           (EC 6.3.5.-) (Asp/Glu-ADT subunit B)
          Length = 493

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 179 AEGRRLFGIEDLPPLRAPRCRWWADEVASTL 271
           AE  R F   DLPP+ AP  R W +E+ +TL
Sbjct: 285 AEDYRYFNDPDLPPVIAP--REWVEEIRATL 313

>TEAD4_CHICK (P48984) Transcriptional enhancer factor TEF-3 (TEA domain family|
           member 4) (TEAD-4) (TEF-1) (M-CAT-binding factor)
           (RTEF-1)
          Length = 438

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2

Query: 5   SSPLPSFESTPSPLPPNHQTRCEIGRRFAPRK 100
           S PLP F+S P+ LPP+  T    GRR A  K
Sbjct: 197 SLPLPGFDS-PTGLPPSSSTPAWQGRRVASSK 227

>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 430

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 154 GEHEGRDGSGGAASLWNRGSPSSQGAEVPV 243
           GEH  R G+G  ASL++   P  Q   VPV
Sbjct: 45  GEHHSRGGTGRLASLFSSLEPQIQPVYVPV 74

>UL49A_HHV11 (O09800) Envelope protein UL49A|
          Length = 91

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 154 GEHEGRDGSGGA-ASLWNRGSPSSQGAEVPVVGG 252
           GE  GRDG GGA     N G  S+ GA VP   G
Sbjct: 33  GEEGGRDGIGGARCETQNTGQMSAPGALVPFYVG 66

>PG33_MYCTU (Q50615) Hypothetical PE-PGRS family protein PE_PGRS33|
          Length = 498

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +1

Query: 166 GRDGSGGAASLWNRGSPSSQGAEVPVVGGRG 258
           G  GSGG+A LW  G     G      GG G
Sbjct: 335 GAGGSGGSALLWGDGGAGGAGGVGSTTGGAG 365

>SYFB_COREF (Q8FTP0) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 835

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +2

Query: 56  HQTRCEIGRRFAPRKRVDPASMAAAAFSIREYAASMRGGTAAEGRRLFG-IEDLPPLRAP 232
           H+   E  RRF   + VDPA +  A          + GGT   GR L G +  +P +  P
Sbjct: 370 HKLSSEASRRF--ERGVDPAIVEVALDMACSLLVEIAGGTIDAGRTLIGEVPTMPSITMP 427

Query: 233 RCR 241
             R
Sbjct: 428 VSR 430

>HCN4_HUMAN (Q9Y3Q4) Potassium/sodium hyperpolarization-activated cyclic|
            nucleotide-gated channel 4
          Length = 1203

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/60 (25%), Positives = 26/60 (43%)
 Frame = -3

Query: 240  RHLGALRGGRSSIPKRRRPSAAVPPLMLAAYSLMENAAAAMDAGSTRFLGANLRPISHRV 61
            R  GA+ G   ++P++    +  PPL L       +    + AG  R  GA   P+  ++
Sbjct: 1140 RPYGAIPGQHVTLPRKTSSGSLPPPLSLFGARATSSGGPPLTAGPQREPGARPEPVRSKL 1199

>RECO_BRAJA (Q9RH67) DNA repair protein recO (Recombination protein O)|
          Length = 250

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = -3

Query: 267 VEATSSAHHRHLGALRGGRSSIPKRRRP 184
           VE  + AH RHLG +RGG  S   R RP
Sbjct: 22  VELLTRAHGRHLGLVRGGAGS---RMRP 46

>SPT51_ARATH (Q9STN3) Putative transcription elongation factor SPT5 homolog 1|
          Length = 1054

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 163 EGRDGSGGAASLWNRGSPSSQGAEVPVVG-GRGRLHLGSCSSCGVP 297
           +G  GS G +  +  GSP S+  E P  G G      GS S  G P
Sbjct: 843 DGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGSYSDAGTP 888

>MBA2_ECOLI (P07112) Mobilization protein A|
          Length = 708

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 71  EIGRRFAPRKRVDPASMAAAAFSIREYAASMRGGTAAEGRRLFG 202
           + GRR       DPA    A   + E  A  RGG    G+R+ G
Sbjct: 277 DTGRRSPAGHEPDPAGQRGAGGGVAESPAPDRGGMGGAGQRVAG 320

>DPOLL_RAT (Q5RKI3) DNA polymerase lambda (EC 2.7.7.7) (EC 4.2.99.-) (Pol|
           Lambda)
          Length = 573

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
 Frame = +1

Query: 1   LFLSPSFLRVYSFSSPPKSPNPVRNRTQICAE-EAXXXXXXXXXXVLHQGVC-------- 153
           L LSP   R  + S PPK+  P + +TQ+ +E EA             Q +         
Sbjct: 164 LSLSPPCTR--AVSPPPKAEKPPKTQTQLSSEDEASDGEGPQVSSADLQALISGHYPTPP 221

Query: 154 GEHEGRDGSGGAASLWNRGSPSSQGA 231
           GE  G D +  A   W    PSSQ A
Sbjct: 222 GEDGGPDPAPEALGKWVCAQPSSQKA 247

>SYFB_LEIXX (Q6AGD6) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 847

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +2

Query: 56  HQTRCEIGRRFAPRKRVDPASMAAAAFSIREYAASMRGGTA-AEGRRLFGIEDLPPLRAP 232
           H+   E  +RF   + VDP    AAA  + +    + GGTA   G  L    D  P+R P
Sbjct: 377 HKLPSEASKRF--ERGVDPRVAVAAAARVVQLLEQLAGGTADGLGSLLDETADAEPIRLP 434

>GATB_CORDI (P61342) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B|
           (EC 6.3.5.-) (Asp/Glu-ADT subunit B)
          Length = 501

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 179 AEGRRLFGIEDLPPLRAPRCRWWADEVASTL 271
           AE  R F   DLPP+ AP  + W +E+ +TL
Sbjct: 293 AEDYRYFNDPDLPPVIAP--KEWVEEIRATL 321

>SYFB_STRCO (O88054) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 840

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 56  HQTRCEIGRRFAPRKRVDPASMAAAAFSIREYAASMRGGTAAEG 187
           H+   E  RRF   + VDP + AAAA    +    + GGTA  G
Sbjct: 368 HKLSSEASRRF--ERGVDPQAAAAAAQRTVDLLVLLAGGTAEAG 409

>RECO_BRUSU (Q8G1P8) DNA repair protein recO (Recombination protein O)|
          Length = 247

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 267 VEATSSAHHRHLGALRGGRS 208
           VE  +  H RH+G +RGGRS
Sbjct: 22  VEVMTCGHGRHMGMVRGGRS 41

>RECO_BRUME (Q8YG76) DNA repair protein recO (Recombination protein O)|
          Length = 247

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 267 VEATSSAHHRHLGALRGGRS 208
           VE  +  H RH+G +RGGRS
Sbjct: 22  VEVMTCGHGRHMGMVRGGRS 41

>RECO_BRUAB (Q57E78) DNA repair protein recO (Recombination protein O)|
          Length = 247

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 267 VEATSSAHHRHLGALRGGRS 208
           VE  +  H RH+G +RGGRS
Sbjct: 22  VEVMTCGHGRHMGMVRGGRS 41

>SPD1_NEPCL (P19837) Spidroin 1 (Dragline silk fibroin 1) (Fragment)|
          Length = 747

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 145 GVCGEHEGRDGSGGAASLW-NRGSPSSQGAEVPVVGGRGRLHLG 273
           G+ G+  G+ G GG  S    RG    QGA     GG G+  LG
Sbjct: 287 GLGGQGAGQGGYGGLGSQGAGRGGLGGQGAGAAAAGGAGQGGLG 330

>TOB2_MOUSE (Q9JM55) Tob2 protein (Transducer of erbB-2 2)|
          Length = 345

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
 Frame = +2

Query: 5   SSPLPSFESTPSPLPPNHQTRCEIGRRFAPRKRVDPASMAAAAFSIREYAAS--MRGGTA 178
           SSP PSF  +PSP              F PR    P +   A+F+  ++ ++   +GG A
Sbjct: 152 SSPSPSFGQSPSP-------------TFIPRS-AQPITFTTASFAATKFGSTKMKKGGGA 197

Query: 179 AEGRRLFGI---EDLPPLRAPR 235
           + G  + G       PP + PR
Sbjct: 198 SGGVSVGGSGAGGQQPPPQQPR 219

>SYFB_CORGL (Q8NQN6) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 835

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +2

Query: 56  HQTRCEIGRRFAPRKRVDPASMAAAAFSIREYAASMRGGTAAEGRRLFGIEDLPPLR 226
           H+   E  RRF   + VDPA +  A          + GGT   GR L G  D+P ++
Sbjct: 370 HKLSSEASRRF--ERGVDPAIVEIALDIAATLLVEIAGGTVDAGRTLVG--DVPAMQ 422

>RECO_RHIME (Q92KH5) DNA repair protein recO (Recombination protein O)|
          Length = 247

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 18/85 (21%)
 Frame = -3

Query: 264 EATSSAHHRHLGALRGGRS-------------SIPKRRR-----PSAAVPPLMLAAYSLM 139
           E  +  H RHLG +R GRS              +  R R         V PL L A SL+
Sbjct: 23  EVMTPGHGRHLGLVRSGRSRTMQPVLQPGNSVEVSWRARLDEHLGEFRVEPLQLRAASLI 82

Query: 138 ENAAAAMDAGSTRFLGANLRPISHR 64
           E A +       + LGA LR +  R
Sbjct: 83  ETATSVY---GIQALGALLRLLPER 104

>ZRAR_ECOLI (P14375) Transcriptional regulatory protein zraR|
          Length = 441

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = -3

Query: 216 GRSSIPKRRRPSAAVPPLMLAAYSLMENAAAAMDAGSTRFL 94
           G +++ + +  + A+P L++ AYS +E A  A+  G+  +L
Sbjct: 64  GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYL 104

>ZRAR_ECO57 (Q8X613) Transcriptional regulatory protein zraR|
          Length = 441

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = -3

Query: 216 GRSSIPKRRRPSAAVPPLMLAAYSLMENAAAAMDAGSTRFL 94
           G +++ + +  + A+P L++ AYS +E A  A+  G+  +L
Sbjct: 64  GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYL 104

>HME1_HUMAN (Q05925) Homeobox protein engrailed-1 (Hu-En-1)|
          Length = 392

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 166 GRDGSGGAASLWNRGSPSSQGAEVPVVGGRGRLHLGSCS 282
           G  GSGG A     GSP +QG + P  G    L +GS +
Sbjct: 224 GGGGSGGGA-----GSPGAQGTKYPEHGNPAILLMGSAN 257

>TOB2_HUMAN (Q14106) Tob2 protein (Transducer of erbB-2 2)|
          Length = 344

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 5   SSPLPSFESTPSPLPPNHQTRCEIGRRFAPRKRVDPASMAAAAFSIREYAAS--MRGGTA 178
           +SP PSF  +PSP              F PR    P +   A+F+  ++ ++   +GG A
Sbjct: 152 NSPSPSFGQSPSP-------------TFIPRS-AQPITFTTASFAATKFGSTKMKKGGGA 197

Query: 179 AEG 187
           A G
Sbjct: 198 ASG 200

>K1949_MOUSE (Q8BQ30) Protein KIAA1949 homolog|
          Length = 594

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
 Frame = +2

Query: 29  STPSPLPPNHQTRCEIGRRFAPRKRVDPASMAAAAFSIREYA--ASMRGGTAAEGRRLFG 202
           S PSPLPP H      G R    +  +P     A  S    A  A    G     R  +G
Sbjct: 378 SGPSPLPPEHSG--TEGSRQQEEEAAEPRPPTPAPLSPPPSAPTAPQPSGDPLMSRLFYG 435

Query: 203 IEDLPPLRAPR 235
           ++  P + APR
Sbjct: 436 VKPGPGVGAPR 446

>MS116_YEAST (P15424) ATP-dependent RNA helicase MSS116, mitochondrial precursor|
           (EC 3.6.1.-)
          Length = 664

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 14  LPSFESTPSPLPPNHQTRCEIGRRFAPRKRVDPASMAAAAFSIREYAA 157
           LP   ST   L  + Q +  + RRF  +  +  + +  A F IR+Y++
Sbjct: 552 LPEIASTYGVLLNDPQLKIPVSRRFLDKLGLSRSPIGKAMFEIRDYSS 599


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,747,240
Number of Sequences: 219361
Number of extensions: 780117
Number of successful extensions: 3398
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 3112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3391
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)