ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl15h07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK069504.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019E20, full insert sequence Length = 2785 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Plus Query: 134 ttctccatcagggagtatgcggcgagcatgaggggc 169 ||||||||| ||||||| |||||||||||||||||| Sbjct: 105 ttctccatccgggagtacgcggcgagcatgaggggc 140
>gb|AC004938.3| Homo sapiens PAC clone RP5-971C3 from 7, complete sequence Length = 88029 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 1 cttttcctctccccttccttccttc 25 ||||||||||||||||||||||||| Sbjct: 83529 cttttcctctccccttccttccttc 83553
>emb|CR691899.2|CNS0FWTJ Tetraodon nigroviridis full-length cDNA Length = 1172 Score = 48.1 bits (24), Expect = 0.022 Identities = 27/28 (96%) Strand = Plus / Minus Query: 163 gaggggcgggacggcagcggaggggcgg 190 |||||||||| ||||||||||||||||| Sbjct: 421 gaggggcggggcggcagcggaggggcgg 394 Score = 48.1 bits (24), Expect = 0.022 Identities = 27/28 (96%) Strand = Plus / Minus Query: 163 gaggggcgggacggcagcggaggggcgg 190 |||||||||| ||||||||||||||||| Sbjct: 402 gaggggcggggcggcagcggaggggcgg 375
>emb|CR691755.2|CNS0FWPJ Tetraodon nigroviridis full-length cDNA Length = 1141 Score = 48.1 bits (24), Expect = 0.022 Identities = 27/28 (96%) Strand = Plus / Minus Query: 163 gaggggcgggacggcagcggaggggcgg 190 |||||||||| ||||||||||||||||| Sbjct: 405 gaggggcggggcggcagcggaggggcgg 378
>gb|AC135920.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0015G13, complete sequence Length = 143966 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 143 agggagtatgcggcgagcatgaggggc 169 |||||||| |||||||||||||||||| Sbjct: 96068 agggagtacgcggcgagcatgaggggc 96042
>gb|AC126469.7| Homo sapiens 3 BAC RP11-644C3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 110204 Score = 46.1 bits (23), Expect = 0.088 Identities = 23/23 (100%) Strand = Plus / Plus Query: 3 tttcctctccccttccttccttc 25 ||||||||||||||||||||||| Sbjct: 5355 tttcctctccccttccttccttc 5377
>gb|AC156801.2| Mus musculus BAC clone RP23-142F22 from chromosome 9, complete sequence Length = 197974 Score = 46.1 bits (23), Expect = 0.088 Identities = 23/23 (100%) Strand = Plus / Plus Query: 3 tttcctctccccttccttccttc 25 ||||||||||||||||||||||| Sbjct: 148856 tttcctctccccttccttccttc 148878
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 143 agggagtatgcggcgagcatgaggggc 169 |||||||| |||||||||||||||||| Sbjct: 6394329 agggagtacgcggcgagcatgaggggc 6394303 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 cccgcgtccatggccgccgcc 130 ||||||||||||||||||||| Sbjct: 19935433 cccgcgtccatggccgccgcc 19935413
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 349 cctcttcgccgcgtcacctccc 370 |||||||||||||||||||||| Sbjct: 27287574 cctcttcgccgcgtcacctccc 27287553 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 ggccgccgccgcgttctccatcag 144 ||||||||||||||||||| |||| Sbjct: 27521807 ggccgccgccgcgttctccgtcag 27521830
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 349 cctcttcgccgcgtcacctccc 370 |||||||||||||||||||||| Sbjct: 6587293 cctcttcgccgcgtcacctccc 6587314
>gb|AC108868.4| Homo sapiens BAC clone RP11-448J14 from 2, complete sequence Length = 109290 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 4 ttcctctccccttccttccttc 25 |||||||||||||||||||||| Sbjct: 94390 ttcctctccccttccttccttc 94411
>dbj|AP005907.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1151D08 Length = 152824 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 349 cctcttcgccgcgtcacctccc 370 |||||||||||||||||||||| Sbjct: 85963 cctcttcgccgcgtcacctccc 85984
>emb|AL133279.7|CNS01DUM Human chromosome 14 DNA sequence BAC R-753D20 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 197224 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 260 gcctccaccttggcagctgcag 281 |||||||||||||||||||||| Sbjct: 45044 gcctccaccttggcagctgcag 45065
>ref|NM_188305.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 582 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 232 gaggtgccggtggtgggcggacgag 256 ||||| ||||||||||||||||||| Sbjct: 78 gaggttccggtggtgggcggacgag 102
>ref|NM_183759.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1644 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 cccgcgtccatggccgccgcc 130 ||||||||||||||||||||| Sbjct: 853 cccgcgtccatggccgccgcc 873
>gb|AC130729.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668F02, complete sequence Length = 178061 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 cccgcgtccatggccgccgcc 130 ||||||||||||||||||||| Sbjct: 76597 cccgcgtccatggccgccgcc 76577
>gb|AC147624.2| Mus musculus BAC clone RP24-329I13 from chromosome 18, complete sequence Length = 176258 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 tttcctctccccttccttcct 23 ||||||||||||||||||||| Sbjct: 135438 tttcctctccccttccttcct 135418
>gb|AC127027.13| Mus musculus chromosome 5, clone RP23-236G19, complete sequence Length = 195654 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 tcctctccccttccttccttc 25 ||||||||||||||||||||| Sbjct: 155070 tcctctccccttccttccttc 155090
>gb|AC183550.3| Pan troglodytes BAC clone CH251-48C10 from chromosome 7, complete sequence Length = 163417 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1 cttttcctctccccttccttccttc 25 ||||| ||||||||||||||||||| Sbjct: 148558 ctttttctctccccttccttccttc 148534
>gb|AC116111.17| Mus musculus chromosome 10, clone RP23-23B18, complete sequence Length = 211888 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1 cttttcctctccccttccttccttc 25 |||||||| |||||||||||||||| Sbjct: 120805 cttttcctttccccttccttccttc 120829
>gb|AC002310.1|HUAC002310 Human Chromosome 16 BAC clone CIT987SK-A-635H12, complete sequence Length = 120955 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 tcctctccccttccttccttc 25 ||||||||||||||||||||| Sbjct: 109817 tcctctccccttccttccttc 109837
>gb|AC125086.4| Mus musculus BAC clone RP24-137C4 from chromosome 18, complete sequence Length = 120722 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 tttcctctccccttccttcct 23 ||||||||||||||||||||| Sbjct: 68893 tttcctctccccttccttcct 68913
>gb|AC015920.14| Homo sapiens chromosome 17, clone CTD-3022L24, complete sequence Length = 150453 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1 cttttcctctccccttccttccttc 25 |||||||| |||||||||||||||| Sbjct: 47116 cttttcctttccccttccttccttc 47140
>emb|AL050326.3|HSJ836E13 Human DNA sequence from clone RP5-836E13 on chromosome 20 Contains ESTs, STS and GSSs, complete sequence Length = 78055 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 tcctctccccttccttccttc 25 ||||||||||||||||||||| Sbjct: 77836 tcctctccccttccttccttc 77816
>gb|DQ131904.1| Homo sapiens integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide) (ITGAL) gene, complete cds Length = 53535 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 tcctctccccttccttccttc 25 ||||||||||||||||||||| Sbjct: 6352 tcctctccccttccttccttc 6332
>gb|AC153950.8| Mus musculus 10 BAC RP24-444M16 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 193809 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 ttcctctccccttccttcctt 24 ||||||||||||||||||||| Sbjct: 115061 ttcctctccccttccttcctt 115081
>gb|AC115085.4| Homo sapiens chromosome 17, clone RP11-280F10, complete sequence Length = 163229 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1 cttttcctctccccttccttccttc 25 |||||||| |||||||||||||||| Sbjct: 43999 cttttcctttccccttccttccttc 43975
>gb|AC159886.2| Mus musculus BAC clone RP24-397P9 from chromosome 9, complete sequence Length = 191328 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 32 actccttctcctctcccccca 52 ||||||||||||||||||||| Sbjct: 117175 actccttctcctctcccccca 117195
>gb|AC122713.2| Homo sapiens chromosome 5 clone RP11-39H3, complete sequence Length = 149006 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 tcctctccccttccttccttc 25 ||||||||||||||||||||| Sbjct: 30126 tcctctccccttccttccttc 30106
>tpg|BK000941.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M333, complete sequence Length = 14620 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 cccgcgtccatggccgccgcc 130 ||||||||||||||||||||| Sbjct: 10442 cccgcgtccatggccgccgcc 10462
>gb|AC016933.20| Homo sapiens 3 BAC RP11-166D18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 153763 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 tcctctccccttccttccttc 25 ||||||||||||||||||||| Sbjct: 147772 tcctctccccttccttccttc 147792
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 226 ggcgccgaggtgccggtggtg 246 ||||||||||||||||||||| Sbjct: 791134 ggcgccgaggtgccggtggtg 791154
>gb|AC010853.11| Homo sapiens chromosome 18, clone RP11-349D12, complete sequence Length = 184396 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 tttcctctccccttccttcct 23 ||||||||||||||||||||| Sbjct: 16570 tttcctctccccttccttcct 16590
>gb|AC098827.3| Homo sapiens BAC clone RP11-640B6 from 4, complete sequence Length = 200914 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 tcctctccccttccttccttc 25 ||||||||||||||||||||| Sbjct: 83869 tcctctccccttccttccttc 83849
>gb|AC067796.11| Homo sapiens chromosome 18, clone RP11-609K12, complete sequence Length = 201861 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 tttcctctccccttccttcct 23 ||||||||||||||||||||| Sbjct: 160587 tttcctctccccttccttcct 160607
>gb|AC139035.12| Mus musculus chromosome 5, clone RP23-348E9, complete sequence Length = 237627 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 tcctctccccttccttccttc 25 ||||||||||||||||||||| Sbjct: 181915 tcctctccccttccttccttc 181935
>gb|AC024301.10| Homo sapiens, clone RP11-686O16, complete sequence Length = 195269 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1 cttttcctctccccttccttccttc 25 |||||||| |||||||||||||||| Sbjct: 177189 cttttcctttccccttccttccttc 177165
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 ccatggccgccgccgcgttct 137 ||||||||||||||||||||| Sbjct: 620426 ccatggccgccgccgcgttct 620446
>gb|AC066606.7| Homo sapiens chromosome 3 clone RP11-74E4 map 3p, complete sequence Length = 181900 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 tctcctctccccccaaatcac 58 ||||||||||||||||||||| Sbjct: 80402 tctcctctccccccaaatcac 80422
>gb|AF129076.2|AF129076 Homo sapiens chromosome 21 clone cosmid F0476 map 21q22.1, complete sequence Length = 42051 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 cttttcctctccccttccttc 21 ||||||||||||||||||||| Sbjct: 16437 cttttcctctccccttccttc 16417
>gb|AC067801.4|AC067801 Homo sapiens chromosome 18, clone RP11-583B12, complete sequence Length = 174938 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1 cttttcctctccccttccttccttc 25 |||||||| |||||||||||||||| Sbjct: 160790 cttttcctttccccttccttccttc 160766
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 cgcgtccatggccgccgccgc 132 ||||||||||||||||||||| Sbjct: 23174193 cgcgtccatggccgccgccgc 23174173
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 cccgcgtccatggccgccgcc 130 ||||||||||||||||||||| Sbjct: 12075364 cccgcgtccatggccgccgcc 12075384 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 232 gaggtgccggtggtgggcggacgag 256 ||||| ||||||||||||||||||| Sbjct: 5597934 gaggttccggtggtgggcggacgag 5597910
>gb|AC146064.4| Pan troglodytes BAC clone RP43-59B14 from chromosome 7, complete sequence Length = 186687 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1 cttttcctctccccttccttccttc 25 ||||| ||||||||||||||||||| Sbjct: 35774 ctttttctctccccttccttccttc 35750
>gb|AC116348.3| Homo sapiens chromosome 16 clone RP11-297C4, complete sequence Length = 149508 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 tcctctccccttccttccttc 25 ||||||||||||||||||||| Sbjct: 43488 tcctctccccttccttccttc 43508
>gb|AC026200.4|AC026200 Homo sapiens chromosome 3 clone RP11-534J21 map 3p, complete sequence Length = 188379 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 tctcctctccccccaaatcac 58 ||||||||||||||||||||| Sbjct: 187429 tctcctctccccccaaatcac 187409
>gb|AC023514.2|AC023514 Homo sapiens chromosome 3 clone RP11-137G22 map 3p, complete sequence Length = 172077 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 tctcctctccccccaaatcac 58 ||||||||||||||||||||| Sbjct: 129992 tctcctctccccccaaatcac 129972
>gb|AC018493.6|AC018493 Homo sapiens chromosome 3 clone RP11-163M22 map 3p, complete sequence Length = 180299 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 tctcctctccccccaaatcac 58 ||||||||||||||||||||| Sbjct: 49971 tctcctctccccccaaatcac 49951
>gb|AC139715.1| Homo sapiens BAC clone RP11-399D2 from 4, complete sequence Length = 174076 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 tcctctccccttccttccttc 25 ||||||||||||||||||||| Sbjct: 168586 tcctctccccttccttccttc 168566
>gb|AC098812.3| Papio anubis clone RP41-440G22, complete sequence Length = 171720 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 tcctctccccttccttccttc 25 ||||||||||||||||||||| Sbjct: 136689 tcctctccccttccttccttc 136669
>gb|AC018840.3|AC018840 Homo sapiens chromosome 3 clone RP11-13F6 map 3p, complete sequence Length = 134841 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 tctcctctccccccaaatcac 58 ||||||||||||||||||||| Sbjct: 59498 tctcctctccccccaaatcac 59478
>dbj|AP003105.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489A05 Length = 158815 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 232 gaggtgccggtggtgggcggacgag 256 ||||| ||||||||||||||||||| Sbjct: 63407 gaggttccggtggtgggcggacgag 63383
>gb|AC011327.17|AC011327 Homo sapiens 3 BAC RP11-77I5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168812 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 tctcctctccccccaaatcac 58 ||||||||||||||||||||| Sbjct: 38449 tctcctctccccccaaatcac 38429
>dbj|AP003414.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1153F04 Length = 158174 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 cccgcgtccatggccgccgcc 130 ||||||||||||||||||||| Sbjct: 42304 cccgcgtccatggccgccgcc 42324
>dbj|AP003921.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0028G04 Length = 159761 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 cccgcgtccatggccgccgcc 130 ||||||||||||||||||||| Sbjct: 121028 cccgcgtccatggccgccgcc 121048
>dbj|BS000224.1| Pan troglodytes chromosome 22 clone:PTB-030G10, map 22, complete sequences Length = 155241 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 cttttcctctccccttccttc 21 ||||||||||||||||||||| Sbjct: 106009 cttttcctctccccttccttc 105989
>dbj|AP004092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1568_B05 Length = 115325 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 cgcgtccatggccgccgccgc 132 ||||||||||||||||||||| Sbjct: 31424 cgcgtccatggccgccgccgc 31404
>emb|CT573100.6| Mouse DNA sequence from clone RP23-218E7 on chromosome 12, complete sequence Length = 183966 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 tcctctccccttccttccttc 25 ||||||||||||||||||||| Sbjct: 55048 tcctctccccttccttccttc 55028
>emb|AL163246.2|HS21C046 Homo sapiens chromosome 21 segment HS21C046 Length = 340000 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 cttttcctctccccttccttc 21 ||||||||||||||||||||| Sbjct: 261997 cttttcctctccccttccttc 261977
>emb|AL844862.12| Mouse DNA sequence from clone RP23-355P22 on chromosome 2, complete sequence Length = 165362 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 tcctctccccttccttccttc 25 ||||||||||||||||||||| Sbjct: 110913 tcctctccccttccttccttc 110893
>gb|AC148013.3| Mus musculus BAC clone RP23-134C2 from 18, complete sequence Length = 192504 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 tttcctctccccttccttcct 23 ||||||||||||||||||||| Sbjct: 175297 tttcctctccccttccttcct 175317
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 107 gaccccgcgtccatggccgccgccg 131 |||||||| |||||||||||||||| Sbjct: 882463 gaccccgcatccatggccgccgccg 882439
>gb|AC153964.3| Mus musculus 10 BAC RP24-399H20 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 173453 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1 cttttcctctccccttccttccttc 25 |||||||| |||||||||||||||| Sbjct: 31896 cttttcctttccccttccttccttc 31920
>emb|AL844510.10| Mouse DNA sequence from clone RP23-54C21 on chromosome 2, complete sequence Length = 121507 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1 cttttcctctccccttccttccttc 25 |||| |||||||||||||||||||| Sbjct: 61110 ctttccctctccccttccttccttc 61134
>emb|AL035610.3|HSM17648 Homo sapiens chromosome 21 PAC LLNLP704M17648Q13, complete sequence Length = 154894 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 cttttcctctccccttccttc 21 ||||||||||||||||||||| Sbjct: 110673 cttttcctctccccttccttc 110653
>gb|AC152948.1| Mus musculus 10 BAC RP23-89E2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 125479 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 cctctccccttccttccttc 25 |||||||||||||||||||| Sbjct: 36116 cctctccccttccttccttc 36135
>ref|XM_469243.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1014 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 accccgcgtccatggccgccgccg 131 |||| ||||||||||||||||||| Sbjct: 898 acccggcgtccatggccgccgccg 875
>ref|XM_478314.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2458 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 ccgcgtccatggccgccgcc 130 |||||||||||||||||||| Sbjct: 230 ccgcgtccatggccgccgcc 249
>ref|XM_478313.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2599 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 ccgcgtccatggccgccgcc 130 |||||||||||||||||||| Sbjct: 280 ccgcgtccatggccgccgcc 299
>gb|AC148822.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0036K13 map near R3342S, complete sequence Length = 135684 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 ggccgccgccgcgttctccatcag 144 ||||||||||||||||||| |||| Sbjct: 57934 ggccgccgccgcgttctccgtcag 57957
>gb|AC101777.8| Mus musculus chromosome 1, clone RP24-123J3, complete sequence Length = 177788 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 ctccttctcctctcccccca 52 |||||||||||||||||||| Sbjct: 68763 ctccttctcctctcccccca 68744
>ref|XM_958511.1| Neurospora crassa OR74A hypothetical protein (NCU08743.1) partial mRNA Length = 576 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ctctccccccaaatcaccaa 61 |||||||||||||||||||| Sbjct: 7 ctctccccccaaatcaccaa 26
>ref|XM_330859.1| Neurospora crassa OR74A hypothetical protein (NCU08743.1) partial mRNA Length = 576 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ctctccccccaaatcaccaa 61 |||||||||||||||||||| Sbjct: 7 ctctccccccaaatcaccaa 26
>gb|AC122409.4| Mus musculus BAC clone RP24-140P18 from chromosome 8, complete sequence Length = 178068 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 cctctccccttccttccttc 25 |||||||||||||||||||| Sbjct: 140409 cctctccccttccttccttc 140428
>gb|AC131713.3| Mus musculus BAC clone RP23-193O18 from chromosome 18, complete sequence Length = 220193 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 cctctccccttccttccttc 25 |||||||||||||||||||| Sbjct: 29721 cctctccccttccttccttc 29702
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 accccgcgtccatggccgccgccg 131 |||| ||||||||||||||||||| Sbjct: 26313852 acccggcgtccatggccgccgccg 26313875
>gb|AC144401.2| Didelphis virginiana clone LBNL3-270H19, complete sequence Length = 180378 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 cacctcccttggctctgccc 382 |||||||||||||||||||| Sbjct: 84251 cacctcccttggctctgccc 84270
>gb|AC090683.7| Oryza sativa chromosome 3 BAC OSJNBa0035I24 genomic sequence, complete sequence Length = 134728 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 accccgcgtccatggccgccgccg 131 |||| ||||||||||||||||||| Sbjct: 76788 acccggcgtccatggccgccgccg 76765
>gb|AC125096.3| Mus musculus BAC clone RP24-181K19 from chromosome 18, complete sequence Length = 154941 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 cctctccccttccttccttc 25 |||||||||||||||||||| Sbjct: 23986 cctctccccttccttccttc 24005
>emb|AL358034.18| Human DNA sequence from clone RP11-51K14 on chromosome 10, complete sequence Length = 108373 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 365 cctcccttggctctgccccctgcc 388 |||||| ||||||||||||||||| Sbjct: 31940 cctcccctggctctgccccctgcc 31917
>emb|AL158050.8| Human DNA sequence from clone RP3-437C15 on chromosome 6 Contains a Wilms' tumour 1-associating protein (WTAP) (KIAA0105) pseudogene, complete sequence Length = 149679 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 cctctccccttccttccttc 25 |||||||||||||||||||| Sbjct: 93001 cctctccccttccttccttc 92982
>emb|AL133325.20| Human DNA sequence from clone RP5-984P4 on chromosome 20 Contains the NKX2-2 gene for NK2 transcription factor related locus 2 (Drosophila), a hydroxysteroid (17-beta) dehydrogenase 12 (HSD17B12) pseudogene, the GSTM3P gene for glutathione S-transferase M3 pseudogene, a novel gene and two CpG islands, complete sequence Length = 160013 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 tttcctctccccttccttcc 22 |||||||||||||||||||| Sbjct: 17511 tttcctctccccttccttcc 17530
>emb|AL117338.15|HSA490O24 Human DNA sequence from clone RP11-490O24 on chromosome 10 Contains a 60S ribosomal protein L23 (RPL23) pseudogene and a novel gene, complete sequence Length = 168778 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 ctccttctcctctcccccca 52 |||||||||||||||||||| Sbjct: 124593 ctccttctcctctcccccca 124612
>emb|AL035703.21|HS61A9 Human DNA sequence from clone RP1-61A9 on chromosome 1p35.2-36.13 Contains a novel gene (KIAA0478) and the EPHA8 gene for ephrin receptor EphA8 precursor, complete sequence Length = 160705 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 cttttcctctccccttccttcctt 24 |||||||||| ||||||||||||| Sbjct: 28972 cttttcctcttcccttccttcctt 28995
>emb|AL683819.19| Mouse DNA sequence from clone RP23-126J10 on chromosome 11 Contains part of the Car10 gene for carbonic anhydrase 10, complete sequence Length = 134741 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 cttttcctctccccttcctt 20 |||||||||||||||||||| Sbjct: 69460 cttttcctctccccttcctt 69441
>gb|AC084361.19| Homo sapiens 12 BAC RP11-364C11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172853 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 cctctccccttccttccttc 25 |||||||||||||||||||| Sbjct: 125700 cctctccccttccttccttc 125681
>gb|AC021193.7| Homo sapiens BAC clone RP11-774G5 from 4, complete sequence Length = 217985 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 ctctgccccctgccagtgat 394 |||||||||||||||||||| Sbjct: 147952 ctctgccccctgccagtgat 147933
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 ggccgccgccgcgttctcca 140 |||||||||||||||||||| Sbjct: 2620263 ggccgccgccgcgttctcca 2620244
>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold Length = 2136267 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 ttttcctctccccttccttccttc 25 ||||||| |||||||||||||||| Sbjct: 440036 ttttcctttccccttccttccttc 440013
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 cccgcgtccatggccgccgccgcg 133 ||||||||||||||||| |||||| Sbjct: 1117182 cccgcgtccatggccgctgccgcg 1117159
>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome Length = 143461 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 111 ccgcgtccatggccgccgccgcgttctccatc 142 ||||||||| | |||||||||||| ||||||| Sbjct: 66202 ccgcgtccacgtccgccgccgcgtcctccatc 66171
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 ccgcgtccatggccgccgcc 130 |||||||||||||||||||| Sbjct: 19214426 ccgcgtccatggccgccgcc 19214407
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 accccgcgtccatggccgccgccg 131 |||| ||||||||||||||||||| Sbjct: 26405161 acccggcgtccatggccgccgccg 26405184
>gb|AC150730.3| Atelerix albiventris clone LB4-141D24, complete sequence Length = 136615 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 ttttcctctccccttccttccttc 25 ||||||| |||||||||||||||| Sbjct: 16912 ttttcctttccccttccttccttc 16889
>gb|AC155811.2| Mus musculus BAC clone RP24-185C13 from chromosome 12, complete sequence Length = 152790 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 ttttcctctccccttccttccttc 25 |||| ||||||||||||||||||| Sbjct: 92870 tttttctctccccttccttccttc 92893
>gb|AC079305.6| Homo sapiens BAC clone RP11-483K11 from 2, complete sequence Length = 184503 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 tccttctcctctccccccaa 53 |||||||||||||||||||| Sbjct: 90236 tccttctcctctccccccaa 90255
>gb|AC105046.10| Homo sapiens chromosome 8, clone CTD-3247F14, complete sequence Length = 87734 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ttcctctccccttccttcct 23 |||||||||||||||||||| Sbjct: 33213 ttcctctccccttccttcct 33194
>gb|AC096657.1| Homo sapiens BAC clone RP11-25L17 from 2, complete sequence Length = 124090 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 tccttctcctctccccccaa 53 |||||||||||||||||||| Sbjct: 88643 tccttctcctctccccccaa 88662
>dbj|AP005127.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0062D12 Length = 155408 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 ccgcgtccatggccgccgcc 130 |||||||||||||||||||| Sbjct: 137821 ccgcgtccatggccgccgcc 137802
>gb|AC114558.18| Mus musculus chromosome 8, clone RP23-47G19, complete sequence Length = 262311 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 cctctccccttccttccttc 25 |||||||||||||||||||| Sbjct: 63560 cctctccccttccttccttc 63541
>emb|X87247.1|PVULSGENE Pseudorabies virus UL21, UL20 & UL19 genes Length = 3797 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 111 ccgcgtccatggccgccgccgcgttctccatc 142 ||||||||| | |||||||||||| ||||||| Sbjct: 2470 ccgcgtccacgtccgccgccgcgtcctccatc 2439
>dbj|AK106514.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-A09, full insert sequence Length = 2457 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 ccgcgtccatggccgccgcc 130 |||||||||||||||||||| Sbjct: 229 ccgcgtccatggccgccgcc 248
>dbj|AK102538.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033096J18, full insert sequence Length = 2599 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 ccgcgtccatggccgccgcc 130 |||||||||||||||||||| Sbjct: 280 ccgcgtccatggccgccgcc 299
>gb|AC153951.3| Mus musculus 10 BAC RP24-480P16 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 176067 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 cctctccccttccttccttc 25 |||||||||||||||||||| Sbjct: 33212 cctctccccttccttccttc 33193
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 ggccgccgccgcgttctccatcag 144 ||||||||||||||||||| |||| Sbjct: 27545795 ggccgccgccgcgttctccgtcag 27545818
>emb|CT010471.11| Mouse DNA sequence from clone RP23-20A5 on chromosome 13, complete sequence Length = 219145 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 tttcctctccccttccttcc 22 |||||||||||||||||||| Sbjct: 182801 tttcctctccccttccttcc 182782
>gb|AC127582.4| Mus musculus BAC clone RP24-89J3 from 12, complete sequence Length = 217949 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 ttttcctctccccttccttccttc 25 |||| ||||||||||||||||||| Sbjct: 204058 tttttctctccccttccttccttc 204035
>emb|AL627104.16| Mouse DNA sequence from clone RP23-412B2 on chromosome 4, complete sequence Length = 193363 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 cctctccccttccttccttc 25 |||||||||||||||||||| Sbjct: 79867 cctctccccttccttccttc 79886
>emb|AL672091.4| Mouse DNA sequence from clone RP23-185L10 on chromosome X, complete sequence Length = 206291 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 ttggctctgccccctgccag 390 |||||||||||||||||||| Sbjct: 36535 ttggctctgccccctgccag 36554
>gb|L00676.1|SH1ULGNS Pseudorabies virus (Suid herpesvirus 1) UL18 through UL21 genes, complete cds and UL15 gene, 3' end Length = 9382 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 111 ccgcgtccatggccgccgccgcgttctccatc 142 ||||||||| | |||||||||||| ||||||| Sbjct: 2470 ccgcgtccacgtccgccgccgcgtcctccatc 2439
>gb|M95285.1|SH1UL2XA Suid herpesvirus 1 genes homologous to HSV1 UL20 and UL21 genes, complete cds; and major capsid protein gene, 3' end Length = 2510 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 111 ccgcgtccatggccgccgccgcgttctccatc 142 ||||||||| | |||||||||||| ||||||| Sbjct: 710 ccgcgtccacgtccgccgccgcgtcctccatc 741 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,191,434 Number of Sequences: 3902068 Number of extensions: 4191434 Number of successful extensions: 114701 Number of sequences better than 10.0: 111 Number of HSP's better than 10.0 without gapping: 113 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113305 Number of HSP's gapped (non-prelim): 1396 length of query: 404 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 382 effective length of database: 17,147,199,772 effective search space: 6550230312904 effective search space used: 6550230312904 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
