ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl15h06 |
|---|---|
| Clone Library Name | barley_pub |
>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding| protein 1) (High pigmentation protein 1) Length = 1090 Score = 67.4 bits (163), Expect = 8e-12 Identities = 39/98 (39%), Positives = 55/98 (56%), Gaps = 1/98 (1%) Frame = +2 Query: 44 FFNRCEXPYXVVVL*PGQQXDARHX*DIXEIALEDKKFV*GSWVSEQFRQXCARLL-IPV 220 F C P VV+ DARH E++L+DK F+ G W + L+ +P Sbjct: 168 FLYGCPKPTIVVLY--QDNKDARHV-KTYEVSLKDKDFIEGPWAQNNLDNGASLLIPVPP 224 Query: 221 PLGGVIIVGEDTIVYCSSTTIKSLSIKQSIIRAVELVD 334 PL GV+I+GE+TIVYCS++ K++ I+ SI RA VD Sbjct: 225 PLCGVLIIGEETIVYCSASAFKAIPIRPSITRAYGRVD 262
>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding| protein 1) Length = 1095 Score = 67.4 bits (163), Expect = 8e-12 Identities = 39/98 (39%), Positives = 55/98 (56%), Gaps = 1/98 (1%) Frame = +2 Query: 44 FFNRCEXPYXVVVL*PGQQXDARHX*DIXEIALEDKKFV*GSWVSEQFRQXCARLL-IPV 220 F C P VV+ DARH E++L+DK F+ G W + L+ +P Sbjct: 173 FLYGCPKPTIVVLY--QDNKDARHV-KTYEVSLKDKDFIEGPWAQNNLDNGASLLIPVPP 229 Query: 221 PLGGVIIVGEDTIVYCSSTTIKSLSIKQSIIRAVELVD 334 PL GV+I+GE+TIVYCS++ K++ I+ SI RA VD Sbjct: 230 PLCGVLIIGEETIVYCSASAFKAIPIRPSITRAYGRVD 267
>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding| protein 1b) (DDB1b) Length = 1088 Score = 64.7 bits (156), Expect = 5e-11 Identities = 43/99 (43%), Positives = 56/99 (56%), Gaps = 2/99 (2%) Frame = +2 Query: 44 FFNRCEXPYXVVVL*PGQQXDARHX*DIXEIALEDKKFV*GSWVSEQFRQXCARLLIPVP 223 F C P V+ DARH E++L+DK FV G W S+ A LLIPVP Sbjct: 168 FLYGCTKPTIAVLY--QDNKDARHV-KTYEVSLKDKNFVEGPW-SQNNLDNGADLLIPVP 223 Query: 224 --LGGVIIVGEDTIVYCSSTTIKSLSIKQSIIRAVELVD 334 L GV+I+GE+TIVYCS+ K++ I+ SI +A VD Sbjct: 224 SPLCGVLIIGEETIVYCSANAFKAIPIRPSITKAYGRVD 262
>DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged DNA-binding| protein 1a) (DDB1a) Length = 1088 Score = 64.7 bits (156), Expect = 5e-11 Identities = 39/79 (49%), Positives = 52/79 (65%), Gaps = 2/79 (2%) Frame = +2 Query: 104 DARHX*DIXEIALEDKKFV*GSWVSEQFRQXCARLLIPVP--LGGVIIVGEDTIVYCSST 277 DARH E++L+DK FV G W S+ A LLIPVP L GV+I+GE+TIVYCS++ Sbjct: 186 DARHV-KTYEVSLKDKDFVEGPW-SQNSLDNGADLLIPVPPPLCGVLIIGEETIVYCSAS 243 Query: 278 TIKSLSIKQSIIRAVELVD 334 K++ I+ SI +A VD Sbjct: 244 AFKAIPIRPSITKAYGRVD 262
>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (UV-damaged DNA-binding factor) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) (Xeroderma pigmentosum group E-complementing protein) (XPCe) Length = 1140 Score = 44.7 bits (104), Expect = 6e-05 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 4/102 (3%) Frame = +2 Query: 44 FFNRCEXPYXVVVL*PGQQXDARHX*DIXEIALEDKKFV*GSWVSEQFRQXCARLL-IPV 220 F C+ P V Q RH E++L +K+F G W E + ++ +P Sbjct: 169 FLYGCQAPTICFVY---QDPQGRHV-KTYEVSLREKEFNKGPWKQENVEAEASMVIAVPE 224 Query: 221 PLGGVIIVGEDTIVYCSSTTIKSLS---IKQSIIRAVELVDP 337 P GG II+G+++I Y + +++ IKQS I VDP Sbjct: 225 PFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNRVDP 266
>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) Length = 1140 Score = 44.7 bits (104), Expect = 6e-05 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 4/102 (3%) Frame = +2 Query: 44 FFNRCEXPYXVVVL*PGQQXDARHX*DIXEIALEDKKFV*GSWVSEQFRQXCARLL-IPV 220 F C+ P V Q RH E++L +K+F G W E + ++ +P Sbjct: 169 FLYGCQAPTICFVY---QDPQGRHV-KTYEVSLREKEFNKGPWKQENVEAEASMVIAVPE 224 Query: 221 PLGGVIIVGEDTIVYCSSTTIKSLS---IKQSIIRAVELVDP 337 P GG II+G+++I Y + +++ IKQS I VDP Sbjct: 225 PFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNRVDP 266
>CPSF1_CAEEL (Q9N4C2) Probable cleavage and polyadenylation specificity factor,| 160 kDa subunit (CPSF 160 kDa subunit) Length = 1454 Score = 33.5 bits (75), Expect = 0.13 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Frame = +2 Query: 170 WVSEQFRQXCARLL-IPVPLGGVIIVGEDTIVY 265 W + C++LL IP PLGG ++ G +T+VY Sbjct: 242 WQTANLPMDCSQLLPIPKPLGGALVFGSNTVVY 274
>AMY1_AEDAE (P53354) Alpha-amylase I precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 737 Score = 28.5 bits (62), Expect = 4.3 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%) Frame = +1 Query: 211 NSCTTGW-CYNSW*GHNSLLQFHNY 282 NSC+TGW C + W ++QF N+ Sbjct: 620 NSCSTGWVCEHRWPEIRKMIQFKNF 644
>HIS4_DESDG (Q311Y2) 1-(5-phosphoribosyl)-5-[(5-| phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) Length = 245 Score = 27.3 bits (59), Expect = 9.7 Identities = 18/53 (33%), Positives = 26/53 (49%) Frame = +2 Query: 179 EQFRQXCARLLIPVPLGGVIIVGEDTIVYCSSTTIKSLSIKQSIIRAVELVDP 337 E R CA + IPV LGG I DT+ ++ +++ II + L DP Sbjct: 64 ELIRTICASVSIPVQLGGGI---RDTV---TAQAYLDAGVERLIIGTIALTDP 110
>FPS_FUJSV (P00530) Tyrosine-protein kinase transforming protein FPS (EC| 2.7.10.2) Length = 873 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%) Frame = +2 Query: 233 VIIVGEDTIVYCSSTTIKS---LSIKQSIIRAVELVDP 337 V+++ E YCS T++ L+I Q + AVE++DP Sbjct: 273 VLVLKEILGEYCSITSLVQEDVLAIHQKVAHAVEMIDP 310 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,769,003 Number of Sequences: 219361 Number of extensions: 516485 Number of successful extensions: 977 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 961 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 973 length of database: 80,573,946 effective HSP length: 88 effective length of database: 61,270,178 effective search space used: 1470484272 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
