ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl15h06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476019.1| Oryza sativa (japonica cultivar-group), predic... 62 1e-06
2gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome... 62 1e-06
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
4dbj|AK067427.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
5dbj|AK065508.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
6dbj|AB037144.1| Oryza sativa (japonica cultivar-group) OsUV-DDB ... 62 1e-06
7gb|AE008676.1| Rickettsia conorii str. Malish 7, section 108 of ... 40 4.5
8gb|AC023991.9| Homo sapiens chromosome 8, clone RP11-137L15, com... 40 4.5
9gb|AC002069.2| Homo sapiens BAC clone CTA-326K9 from 7, complete... 40 4.5
10emb|BX842642.1| Mycoplasma mycoides subsp. mycoides SC genomic D... 40 4.5
11gb|AC115088.6| Homo sapiens chromosome 11, clone RP11-792G9, com... 40 4.5
12gb|AC124298.4| Homo sapiens chromosome 8, clone RP11-114J10, com... 40 4.5
13gb|AC145948.5| Gallus gallus BAC clone CH261-24O17 from chromoso... 40 4.5 
>ref|XM_476019.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3273

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 128/158 (81%), Gaps = 11/158 (6%)
 Strand = Plus / Plus

                                                                       
Query: 118 ttaagacatanntgaaattgcgttggaggacaaaaagtttgtntgaggttcttgggtctc 177
           ||||||||||  |||| |||| ||| |||||||| | ||||| ||||| || | |||| |
Sbjct: 569 ttaagacata--tgaagttgcattgaaggacaaagactttgt-tgagggtccttggtcgc 625

                                                                       
Query: 178 agaacaatttagacaannctgtgctcgcctgttaattcctgtacca------ctgggtgg 231
           ||||||||||||||||    ||||| | |||||||| |||||||||      || |||||
Sbjct: 626 agaacaatttagacaatg--gtgctggtctgttaatacctgtaccagctcctcttggtgg 683

                                                 
Query: 232 tgttataatagttggtgaggacacaatagtttactgca 269
           ||| |||||  |||||||||| ||||||||||||||||
Sbjct: 684 tgtcataattattggtgaggagacaatagtttactgca 721
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>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08,
             complete sequence
          Length = 142196

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 128/158 (81%), Gaps = 11/158 (6%)
 Strand = Plus / Plus

                                                                         
Query: 118   ttaagacatanntgaaattgcgttggaggacaaaaagtttgtntgaggttcttgggtctc 177
             ||||||||||  |||| |||| ||| |||||||| | ||||| ||||| || | |||| |
Sbjct: 73123 ttaagacata--tgaagttgcattgaaggacaaagactttgt-tgagggtccttggtcgc 73179

                                                                         
Query: 178   agaacaatttagacaannctgtgctcgcctgttaattcctgtacca------ctgggtgg 231
             ||||||||||||||||    ||||| | |||||||| |||||||||      || |||||
Sbjct: 73180 agaacaatttagacaatg--gtgctggtctgttaatacctgtaccagctcctcttggtgg 73237

                                                   
Query: 232   tgttataatagttggtgaggacacaatagtttactgca 269
             ||| |||||  |||||||||| ||||||||||||||||
Sbjct: 73238 tgtcataattattggtgaggagacaatagtttactgca 73275
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 128/158 (81%), Gaps = 11/158 (6%)
 Strand = Plus / Plus

                                                                            
Query: 118      ttaagacatanntgaaattgcgttggaggacaaaaagtttgtntgaggttcttgggtctc 177
                ||||||||||  |||| |||| ||| |||||||| | ||||| ||||| || | |||| |
Sbjct: 29294466 ttaagacata--tgaagttgcattgaaggacaaagactttgt-tgagggtccttggtcgc 29294522

                                                                            
Query: 178      agaacaatttagacaannctgtgctcgcctgttaattcctgtacca------ctgggtgg 231
                ||||||||||||||||    ||||| | |||||||| |||||||||      || |||||
Sbjct: 29294523 agaacaatttagacaatg--gtgctggtctgttaatacctgtaccagctcctcttggtgg 29294580

                                                      
Query: 232      tgttataatagttggtgaggacacaatagtttactgca 269
                ||| |||||  |||||||||| ||||||||||||||||
Sbjct: 29294581 tgtcataattattggtgaggagacaatagtttactgca 29294618
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>dbj|AK067427.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107E16, full
           insert sequence
          Length = 4136

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 128/158 (81%), Gaps = 11/158 (6%)
 Strand = Plus / Plus

                                                                       
Query: 118 ttaagacatanntgaaattgcgttggaggacaaaaagtttgtntgaggttcttgggtctc 177
           ||||||||||  |||| |||| ||| |||||||| | ||||| ||||| || | |||| |
Sbjct: 606 ttaagacata--tgaagttgcattgaaggacaaagactttgt-tgagggtccttggtcgc 662

                                                                       
Query: 178 agaacaatttagacaannctgtgctcgcctgttaattcctgtacca------ctgggtgg 231
           ||||||||||||||||    ||||| | |||||||| |||||||||      || |||||
Sbjct: 663 agaacaatttagacaatg--gtgctggtctgttaatacctgtaccagctcctcttggtgg 720

                                                 
Query: 232 tgttataatagttggtgaggacacaatagtttactgca 269
           ||| |||||  |||||||||| ||||||||||||||||
Sbjct: 721 tgtcataattattggtgaggagacaatagtttactgca 758
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>dbj|AK065508.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026I01, full
           insert sequence
          Length = 3792

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 128/158 (81%), Gaps = 11/158 (6%)
 Strand = Plus / Plus

                                                                       
Query: 118 ttaagacatanntgaaattgcgttggaggacaaaaagtttgtntgaggttcttgggtctc 177
           ||||||||||  |||| |||| ||| |||||||| | ||||| ||||| || | |||| |
Sbjct: 685 ttaagacata--tgaagttgcattgaaggacaaagactttgt-tgagggtccttggtcgc 741

                                                                       
Query: 178 agaacaatttagacaannctgtgctcgcctgttaattcctgtacca------ctgggtgg 231
           ||||||||||||||||    ||||| | |||||||| |||||||||      || |||||
Sbjct: 742 agaacaatttagacaatg--gtgctggtctgttaatacctgtaccagctcctcttggtgg 799

                                                 
Query: 232 tgttataatagttggtgaggacacaatagtttactgca 269
           ||| |||||  |||||||||| ||||||||||||||||
Sbjct: 800 tgtcataattattggtgaggagacaatagtttactgca 837
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>dbj|AB037144.1| Oryza sativa (japonica cultivar-group) OsUV-DDB mRNA for UV-damaged
           DNA binding protein, complete cds
          Length = 3658

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 128/158 (81%), Gaps = 11/158 (6%)
 Strand = Plus / Plus

                                                                       
Query: 118 ttaagacatanntgaaattgcgttggaggacaaaaagtttgtntgaggttcttgggtctc 177
           ||||||||||  |||| |||| ||| |||||||| | ||||| ||||| || | |||| |
Sbjct: 685 ttaagacata--tgaagttgcattgaaggacaaagactttgt-tgagggtccttggtcgc 741

                                                                       
Query: 178 agaacaatttagacaannctgtgctcgcctgttaattcctgtacca------ctgggtgg 231
           ||||||||||||||||    ||||| | |||||||| |||||||||      || |||||
Sbjct: 742 agaacaatttagacaatg--gtgctggtctgttaatacctgtaccagctcctcttggtgg 799

                                                 
Query: 232 tgttataatagttggtgaggacacaatagtttactgca 269
           ||| |||||  |||||||||| ||||||||||||||||
Sbjct: 800 tgtcataattattggtgaggagacaatagtttactgca 837
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>gb|AE008676.1| Rickettsia conorii str. Malish 7, section 108 of 114 of the complete
            genome
          Length = 12480

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 277  aactattaaatctctatcaa 296
            ||||||||||||||||||||
Sbjct: 4116 aactattaaatctctatcaa 4135
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>gb|AC023991.9| Homo sapiens chromosome 8, clone RP11-137L15, complete sequence
          Length = 149910

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 307   tatcattagagctgttgagctggt 330
             ||||||||||| ||||||||||||
Sbjct: 56315 tatcattagagatgttgagctggt 56338
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>gb|AC002069.2| Homo sapiens BAC clone CTA-326K9 from 7, complete sequence
          Length = 158537

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    gaggttcttgggtctcagaa 181
              ||||||||||||||||||||
Sbjct: 140365 gaggttcttgggtctcagaa 140384
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>emb|BX842642.1| Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence;
             segment 1/4
          Length = 347558

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   aactattaaatctctatcaa 296
             ||||||||||||||||||||
Sbjct: 52152 aactattaaatctctatcaa 52171
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>gb|AC115088.6| Homo sapiens chromosome 11, clone RP11-792G9, complete sequence
          Length = 200274

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     ttctttaaccaggacaacaa 100
              ||||||||||||||||||||
Sbjct: 160135 ttctttaaccaggacaacaa 160154
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>gb|AC124298.4| Homo sapiens chromosome 8, clone RP11-114J10, complete sequence
          Length = 81250

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 307   tatcattagagctgttgagctggt 330
             ||||||||||| ||||||||||||
Sbjct: 60372 tatcattagagatgttgagctggt 60395
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>gb|AC145948.5| Gallus gallus BAC clone CH261-24O17 from chromosome unknown, complete
             sequence
          Length = 242530

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 285   aatctctatcaataaagcaa 304
             ||||||||||||||||||||
Sbjct: 52701 aatctctatcaataaagcaa 52682


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,398,147
Number of Sequences: 3902068
Number of extensions: 2398147
Number of successful extensions: 36280
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36245
Number of HSP's gapped (non-prelim): 35
length of query: 339
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 317
effective length of database: 17,147,199,772
effective search space: 5435662327724
effective search space used: 5435662327724
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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