ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl15h05 |
|---|---|
| Clone Library Name | barley_pub |
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 120 bits (301), Expect = 8e-28 Identities = 63/96 (65%), Positives = 77/96 (80%), Gaps = 5/96 (5%) Frame = +2 Query: 74 VGGIVSDLTGG----LRGAH-LMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNVD 238 +GGI+ LTG L+G+ LMRKNALD NDFGATV+DG++E LGRGVTCQL+SS+ VD Sbjct: 2 LGGIIGGLTGNKNARLKGSLVLMRKNALDINDFGATVIDGISEFLGRGVTCQLVSSSLVD 61 Query: 239 HNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAV 346 NNG RG+VG EA+LEQWL T+LP +TTGE+KF V Sbjct: 62 PNNGNRGRVGTEASLEQWL--TSLPSLTTGESKFGV 95
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 120 bits (300), Expect = 1e-27 Identities = 60/97 (61%), Positives = 74/97 (76%), Gaps = 6/97 (6%) Frame = +2 Query: 74 VGGIVSDLTGGLRGAHL------MRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNV 235 +GG++ LTG + A L MRKN LD NDFGAT++DG+ E LG+GVTCQLISST V Sbjct: 3 LGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTAV 62 Query: 236 DHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAV 346 D +NGGRGKVGAEA LEQW+ T+LP +TTGE+KF + Sbjct: 63 DQDNGGRGKVGAEAELEQWV--TSLPSLTTGESKFGL 97
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 117 bits (292), Expect = 9e-27 Identities = 60/97 (61%), Positives = 74/97 (76%), Gaps = 6/97 (6%) Frame = +2 Query: 74 VGGIVSDLTGGLRGAHL------MRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNV 235 +GGI+ +TG + + L MRKN LD NDFGATV+DG+ E LG+GVTCQLISST V Sbjct: 2 LGGIIDTITGSSKQSRLKGTVVLMRKNVLDLNDFGATVIDGLGEFLGKGVTCQLISSTAV 61 Query: 236 DHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAV 346 D NNG RGKVGAEA+LEQW L ++LP +TTGE++F V Sbjct: 62 DPNNGNRGKVGAEASLEQW-LTSSLPSLTTGESRFGV 97
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 80.1 bits (196), Expect = 1e-15 Identities = 46/96 (47%), Positives = 63/96 (65%), Gaps = 5/96 (5%) Frame = +2 Query: 74 VGGIVSDLTGG----LRG-AHLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNVD 238 +GG+ LTG ++G A LM + LD DF A+++D V E+ G +TCQL+S+T D Sbjct: 2 LGGLKDKLTGKNGNKIKGLAVLMSRKLLDPRDFTASLLDNVHEVFGNSITCQLVSATVAD 61 Query: 239 HNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAV 346 NN GRG VG+EANLEQ L T+LP ++ GE+K V Sbjct: 62 QNNEGRGIVGSEANLEQGL--TDLPSVSQGESKLTV 95
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 72.8 bits (177), Expect = 2e-13 Identities = 35/75 (46%), Positives = 49/75 (65%) Frame = +2 Query: 122 LMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLP 301 LM+KN LDFNDF A+ +D + E LG +T +L+SS D NG +GK+G A+LE W+ Sbjct: 27 LMKKNVLDFNDFNASFLDRLHEFLGNKITLRLVSSDVTDSENGSKGKLGKAAHLEDWI-- 84 Query: 302 TNLPFITTGENKFAV 346 T + +T GE+ F V Sbjct: 85 TTITSLTAGESAFKV 99
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 63.5 bits (153), Expect = 1e-10 Identities = 44/98 (44%), Positives = 62/98 (63%), Gaps = 7/98 (7%) Frame = +2 Query: 74 VGGIVSDLTGG-----LRG-AHLMRKNALDFNDFGATVMDGVTELLGRGVTCQLIS-STN 232 +GGIV + G ++G LM+KN LDF + GA+V+DG+++LLG+ V+ QLIS S N Sbjct: 3 LGGIVDAILGKDDRPKVKGRVILMKKNVLDFINIGASVVDGISDLLGQKVSIQLISGSVN 62 Query: 233 VDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAV 346 D G GK+ A LE WL T++ IT GE+ F+V Sbjct: 63 YD---GLEGKLSNPAYLESWL--TDITPITAGESTFSV 95
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 59.3 bits (142), Expect = 2e-09 Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 11/99 (11%) Frame = +2 Query: 83 IVSDLTGGLRGAH-----------LMRKNALDFNDFGATVMDGVTELLGRGVTCQLISST 229 ++ L GGL G H +M+KNALDF D ++ D + E LG+ V+ QLISS Sbjct: 1 MLGQLVGGLIGGHHDSKKVKGTVVMMKKNALDFTDLAGSLTDKIFEALGQKVSFQLISSV 60 Query: 230 NVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAV 346 D NG +GK A LE +LL L + GE F V Sbjct: 61 QSDPANGLQGKHSNPAYLENFLL--TLTPLAAGETAFGV 97
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 58.5 bits (140), Expect = 4e-09 Identities = 36/85 (42%), Positives = 53/85 (62%), Gaps = 3/85 (3%) Frame = +2 Query: 101 GGLRG-AHLMRKNALDFNDFGATVMDGVTELLGR--GVTCQLISSTNVDHNNGGRGKVGA 271 G +RG A L++K+ L DF A+++DGV +LG GV +L+S+T D +NGGRGK+G Sbjct: 21 GRIRGTAVLVKKDVLGLGDFHASLLDGVHNILGHKEGVAFRLVSATARDPSNGGRGKLGK 80 Query: 272 EANLEQWLLPTNLPFITTGENKFAV 346 A+LE+ L + GE+ F V Sbjct: 81 PAHLEE--LVVTMKSTAAGESVFRV 103
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 53.1 bits (126), Expect = 2e-07 Identities = 42/110 (38%), Positives = 55/110 (50%), Gaps = 25/110 (22%) Frame = +2 Query: 92 DLTGGLRGAH-------LMRKNALDFN--------------DFGATV----MDGVTELLG 196 ++TG L H LMRKN LDFN D G + +DG+T LG Sbjct: 4 NVTGLLNKGHKIRGTVVLMRKNVLDFNTIVSIGGGNVHGVIDSGINIIGSTLDGLTAFLG 63 Query: 197 RGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAV 346 R V+ QLIS+T D N G+GKVG + LE L +LP + GE+ F + Sbjct: 64 RSVSLQLISATKSDAN--GKGKVGKDTFLEGVL--ASLPTLGAGESAFNI 109
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 50.4 bits (119), Expect = 1e-06 Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 11/99 (11%) Frame = +2 Query: 83 IVSDLTGGLRGAH-----------LMRKNALDFNDFGATVMDGVTELLGRGVTCQLISST 229 ++ +T GL G H +M KN LDF D ++ + ++LG+ V+ QLISS Sbjct: 1 MIGQITSGLFGGHDDSKKVKGTVVMMNKNVLDFTDLAGSLTGKIFDVLGQKVSFQLISSV 60 Query: 230 NVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAV 346 D NG +GK A LE L T P E F V Sbjct: 61 QGDPTNGLQGKHSNPAYLENSLF-TLTPLTAGSETAFGV 98
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 49.7 bits (117), Expect = 2e-06 Identities = 32/75 (42%), Positives = 45/75 (60%) Frame = +2 Query: 122 LMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLP 301 LM KN L+ N G+ V D + LGR V+ QLIS+T D + G+GKVG + LE + Sbjct: 14 LMPKNELEVNPDGSAV-DNLNAFLGRSVSLQLISATKADAH--GKGKVGKDTFLEG--IN 68 Query: 302 TNLPFITTGENKFAV 346 T+LP + GE+ F + Sbjct: 69 TSLPTLGAGESAFNI 83
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 48.5 bits (114), Expect = 4e-06 Identities = 41/119 (34%), Positives = 54/119 (45%), Gaps = 25/119 (21%) Frame = +2 Query: 65 MFGVGGIVSDLTGGLRGAH-------LMRKNALDFNDFG------------------ATV 169 MF V G+ L G G H LMRKN LDFN + Sbjct: 1 MFSVPGVSGILNRG--GGHKIKGTVVLMRKNVLDFNSVADLTKGNVGGLIGTGLNVVGST 58 Query: 170 MDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAV 346 +D +T LGR V QLIS+T N G+GKVG + LE ++ +LP + GE+ F + Sbjct: 59 LDNLTAFLGRSVALQLISATKPLAN--GKGKVGKDTFLEGIIV--SLPTLGAGESAFNI 113
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 45.8 bits (107), Expect = 3e-05 Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 20/106 (18%) Frame = +2 Query: 89 SDLTGGLRGAH-------LMRKNALDFN-------------DFGATVMDGVTELLGRGVT 208 S +TG L H LMRKN LD N D + +D +T LGR V+ Sbjct: 3 SGVTGILNRGHKIKGTVVLMRKNVLDINSLTTVGGVIGQGFDILGSTVDNLTAFLGRSVS 62 Query: 209 CQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAV 346 QLIS+T D G+GK+G LE + ++LP + G++ F + Sbjct: 63 LQLISATKPDAT--GKGKLGKATFLEG--IISSLPTLGAGQSAFKI 104
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 45.4 bits (106), Expect = 3e-05 Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 13/88 (14%) Frame = +2 Query: 122 LMRKNALDFN-------------DFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGK 262 LMRKN L N D + +D +T LGR V+ QLIS+T D N G+GK Sbjct: 18 LMRKNVLHVNSVTSVGGIIGQGLDLVGSTLDTLTAFLGRPVSLQLISATKADAN--GKGK 75 Query: 263 VGAEANLEQWLLPTNLPFITTGENKFAV 346 +G LE + T+LP + G++ F + Sbjct: 76 LGKATFLEG--IITSLPTLGAGQSAFKI 101
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 43.9 bits (102), Expect = 1e-04 Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Frame = +2 Query: 71 GVGGIVSDLTGGL-RGAHLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNVDHNN 247 G GG++ TG L +G L+ V+D T LGR ++ QLIS+T D Sbjct: 32 GKGGVIDTATGILGQGVSLV-----------GGVIDTATSFLGRNISMQLISATQTD--G 78 Query: 248 GGRGKVGAEANLEQWLLPTNLPFITTGENKFAV 346 G GKVG E LE+ LPT LP + ++ F++ Sbjct: 79 SGNGKVGKEVYLEKH-LPT-LPTLGARQDAFSI 109
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 41.2 bits (95), Expect = 6e-04 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 22/97 (22%) Frame = +2 Query: 122 LMRKNALDFNDFGAT----------------------VMDGVTELLGRGVTCQLISSTNV 235 LM KN DFN+F +T ++DG T + R + QLIS+T Sbjct: 17 LMTKNVFDFNEFVSTTRGGIVGAAGGLFGAATDIVGGIVDGATAIFSRNIAIQLISATKT 76 Query: 236 DHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAV 346 D G GKVG + LE+ L +LP + ++ F V Sbjct: 77 D--GLGNGKVGKQTFLEKHL--PSLPNLGDRQDAFNV 109
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 39.7 bits (91), Expect = 0.002 Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 20/95 (21%) Frame = +2 Query: 122 LMRKNALDFNDFGA--------------------TVMDGVTELLGRGVTCQLISSTNVDH 241 LM+KN LD N A +++D T LGR V +LIS+T D Sbjct: 18 LMQKNVLDINALTAAQSPSGIIGGAFGVVGSIAGSIIDTATAFLGRSVRLRLISATVADA 77 Query: 242 NNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAV 346 + G+GKV EA LE L T++P + ++ F+V Sbjct: 78 S--GKGKVSKEAFLEGLL--TSIPTLGDKQSAFSV 108
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 34.7 bits (78), Expect = 0.060 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 13/88 (14%) Frame = +2 Query: 122 LMRKNALDFND-------------FGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGK 262 +M+KN LD N F + +D +T ++ QLIS+T D GG+GK Sbjct: 17 VMQKNVLDINSITSVGGIVDQGLGFIGSAVDALT-FAATKISIQLISATKAD---GGKGK 72 Query: 263 VGAEANLEQWLLPTNLPFITTGENKFAV 346 +G NL + LP + GE + V Sbjct: 73 IGKSTNLRGKI---TLPTLGAGEQAYDV 97
>RUVC_LEIXX (Q6AFB6) Crossover junction endodeoxyribonuclease ruvC (EC| 3.1.22.4) (Holliday junction nuclease ruvC) (Holliday juction resolvase ruvC) Length = 208 Score = 31.6 bits (70), Expect = 0.51 Identities = 20/53 (37%), Positives = 29/53 (54%) Frame = -2 Query: 166 GGAEVVEVERVLAHEVGAPEAPRQVAHDAADAEHLRSISGECGTLAKLARCGA 8 G A+ +V+ ++A +G PEAP+ DAADA + G LA L+ GA Sbjct: 118 GSADKKQVQAMVARVLGLPEAPKPA--DAADALAIAICHAWRGGLAALSTSGA 168
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 30.8 bits (68), Expect = 0.86 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = -3 Query: 201 PRPRSSVTPSMTVAPKSLKSSAFLRMRWAPRRPPVRSLTMPPTP 70 PR RS P +P + S ++ R++P PP R PP P Sbjct: 570 PRRRSPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPP 613 Score = 27.3 bits (59), Expect = 9.5 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 6/48 (12%) Frame = -3 Query: 201 PRPRSSVTP------SMTVAPKSLKSSAFLRMRWAPRRPPVRSLTMPP 76 PR R S +P S S SS+ R R P++PP R+++ PP Sbjct: 332 PRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTVSSPP 379
>USH1C_MOUSE (Q9ES64) Harmonin (Usher syndrome type-1C protein homolog) (PDZ| domain-containing protein) Length = 910 Score = 30.0 bits (66), Expect = 1.5 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Frame = -3 Query: 207 VTPRPRSSVTPSMTVAPKSLKSSAFLRMR---WAPRRPPVRSLTMPPTPNI 64 V P P S +PS AP L SS + W R PP + +PP P+I Sbjct: 563 VMPHPPSVNSPSKVPAPPVLPSSGHVSSSSSPWVQRTPP--PIPIPPPPSI 611
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = -3 Query: 201 PRPRSSVTPSMTVAPKSLKSSAFLRMRWAPRRPPVRSLTMPPTP 70 PR R+ P +P + S ++ R++P PP R PP P Sbjct: 591 PRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPP 634
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = -3 Query: 201 PRPRSSVTPSMTVAPKSLKSSAFLRMRWAPRRPPVRSLTMPPTP 70 PR R+ P +P + S ++ R++P PP R PP P Sbjct: 596 PRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPP 639
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = -3 Query: 201 PRPRSSVTPSMTVAPKSLKSSAFLRMRWAPRRPPVRSLTMPPTP 70 PR R+ P +P + S ++ R++P PP R PP P Sbjct: 577 PRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPP 620
>TRPM2_HUMAN (O94759) Transient receptor potential cation channel subfamily M| member 2 (EC 3.6.1.13) (Long transient receptor potential channel 2) (LTrpC2) (LTrpC-2) (Transient receptor potential channel 7) (TrpC7) (Estrogen-responsive element-associated Length = 1503 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = +2 Query: 122 LMRKNALDFNDFGATVMDGVTELLGRGVTCQLISST 229 LM+K AL F+DF + G L G+TC+LI +T Sbjct: 856 LMKKAALYFSDFWNKLDVGAILLFVAGLTCRLIPAT 891
>YAI7_SCHPO (Q09894) Hypothetical protein C24B11.07c in chromosome I| Length = 561 Score = 29.3 bits (64), Expect = 2.5 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%) Frame = -3 Query: 300 GRSHCSRFASAPTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKS-----SA 136 G+ + R SAP+ + + + ++++S RS +PS+ +SLKS Sbjct: 374 GKPNMGRIPSAPSLSKGRAMTADNMDMLSLTTRRSRRSLYSPSLMQMQQSLKSDYEGLGR 433 Query: 135 FLRMRWAPR-RPPVR 94 R+APR PPVR Sbjct: 434 TFDPRFAPRGSPPVR 448
>PKNH_MYCTU (Q11053) Probable serine/threonine-protein kinase pknH (EC| 2.7.11.1) Length = 626 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/49 (28%), Positives = 20/49 (40%) Frame = -3 Query: 207 VTPRPRSSVTPSMTVAPKSLKSSAFLRMRWAPRRPPVRSLTMPPTPNIF 61 V P P+ S TP P + + WAP P+ + PTP + Sbjct: 328 VQPAPKPSYTPPAQPGPAGQRPGPTGQPSWAPNSGPMPASGPTPTPQYY 376
>ARGJ_ACIAD (Q6FED8) Arginine biosynthesis bifunctional protein argJ [Includes:| Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine acetyltransferase) (Ornithine transacetylase) (OATase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate syn Length = 406 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +2 Query: 41 TLPRDRAKMFGVGGIVSDLTGGLRGAHLMRKNALDFNDFGAT 166 T P+ ++ F + G+V +TG +GA ++R N F AT Sbjct: 156 TTPKGASEQFELDGVVYTMTGISKGAGMIRPNMATMLSFVAT 197
>PCD15_MOUSE (Q99PJ1) Protocadherin-15 precursor| Length = 1943 Score = 28.9 bits (63), Expect = 3.3 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Frame = -3 Query: 267 PTFPRPPLLWSTLVELMSWQVTPRPRSSVT---PSMTVAPKSLKSSAFLRMRWAPRRPPV 97 P PRPP+ ++T +S P P VT P T SL L + PR P Sbjct: 1754 PPLPRPPIAFTTFPLPLS-PPNPPPPQLVTFSLPISTPPTSSLPLPPPLSLPPPPRPPAP 1812 Query: 96 RSLTMPPTPNI 64 R PP+ +I Sbjct: 1813 RLFPQPPSTSI 1823
>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1874 Score = 28.9 bits (63), Expect = 3.3 Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 2/72 (2%) Frame = -3 Query: 273 SAPTFPRPPLLWSTLVELMSWQVTPR-PRSSVTPSMTVAPKSLKSSAFLRMRWAPRRP-P 100 SA P PLL EL P P S + PKS S AP +P P Sbjct: 647 SAQPTPGEPLLAPPTTELKPESSNPNNPNPSSSAGSNPPPKSSSSDN----PPAPNKPTP 702 Query: 99 VRSLTMPPTPNI 64 S T PP+PN+ Sbjct: 703 TSSSTTPPSPNL 714
>GLTB_MAIZE (P23225) Ferredoxin-dependent glutamate synthase, chloroplast| precursor (EC 1.4.7.1) (Fd-GOGAT) Length = 1616 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -2 Query: 115 APEAPRQVAHDAADAEHLRSISGECG 38 AP AP++ AAD H+ S G CG Sbjct: 74 APPAPQKPTQQAADLNHILSERGACG 99
>CELR3_HUMAN (Q9NYQ7) Cadherin EGF LAG seven-pass G-type receptor 3 precursor| (Flamingo homolog 1) (hFmi1) (Multiple epidermal growth factor-like domains 2) (Epidermal growth factor-like 1) Length = 3312 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = -3 Query: 195 PRSSVTPSMTVAPKSLKSSAFLRMRWAPRRPPVRSLTMPPTP 70 PR S T + APK ++S R R+ P+RP R +P P Sbjct: 262 PRESRT-APEPAPKRMRSRGLFRCRFLPQRPGPRPPGLPARP 302
>IF2_SYNY3 (P72689) Translation initiation factor IF-2| Length = 1001 Score = 28.5 bits (62), Expect = 4.3 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Frame = -3 Query: 270 APTFPRPPLLWSTLVELMSWQVTPR--PRSSVTPSMTVAPKSLKSSAFLRMRWAPRRPPV 97 APT P+PP+ ++ ++ + + P+S P+ +AP + S + AP PP Sbjct: 114 APTPPQPPVAKASAPKIQKQEEPAQEAPKSVAPPTQPLAPPPVPSLQSPPSKPAPPTPPA 173 Query: 96 RSLTMPP 76 + P Sbjct: 174 KKAAPAP 180
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 28.1 bits (61), Expect = 5.6 Identities = 19/64 (29%), Positives = 25/64 (39%) Frame = -3 Query: 264 TFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRWAPRRPPVRSLT 85 T P PP +T TP P ++ +P T S+ L P PP + T Sbjct: 1600 TTPSPPTTTTT---------TPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTT 1650 Query: 84 MPPT 73 PPT Sbjct: 1651 PPPT 1654 Score = 28.1 bits (61), Expect = 5.6 Identities = 19/64 (29%), Positives = 25/64 (39%) Frame = -3 Query: 264 TFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRWAPRRPPVRSLT 85 T P PP +T TP P ++ +P T S+ L P PP + T Sbjct: 1521 TTPSPPTTTTT---------TPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTT 1571 Query: 84 MPPT 73 PPT Sbjct: 1572 PPPT 1575
>SYY_RHIME (Q92PK5) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA| ligase) (TyrRS) Length = 417 Score = 28.1 bits (61), Expect = 5.6 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 18/72 (25%) Frame = -2 Query: 166 GGAEVVEVERVLAHEV-----------GAPEAPRQVAHDAADAEHLRSI-------SGEC 41 GG+E+ EV++VLA EV A E R+ + A AE+L S+ Sbjct: 291 GGSEINEVKKVLATEVTAMLHGRAAAEQAAETARKTFEEGALAENLPSVEVPAPELESGL 350 Query: 40 GTLAKLARCGAA 5 G L L R G A Sbjct: 351 GLLTLLVRAGLA 362
>CN103_MOUSE (Q80XK6) Protein C14orf103 homolog| Length = 908 Score = 28.1 bits (61), Expect = 5.6 Identities = 15/49 (30%), Positives = 22/49 (44%) Frame = -2 Query: 169 DGGAEVVEVERVLAHEVGAPEAPRQVAHDAADAEHLRSISGECGTLAKL 23 D G + + V + G APR H ++D H+R+ S C L L Sbjct: 142 DMGLLELTITAVKSDSDGEQTAPRFELHCSSDVVHIRTCSDSCAALMNL 190
>ARGJ_BORPE (Q7VSW3) Arginine biosynthesis bifunctional protein argJ [Includes:| Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine acetyltransferase) (Ornithine transacetylase) (OATase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate syn Length = 408 Score = 27.7 bits (60), Expect = 7.3 Identities = 18/59 (30%), Positives = 30/59 (50%) Frame = +2 Query: 41 TLPRDRAKMFGVGGIVSDLTGGLRGAHLMRKNALDFNDFGATVMDGVTELLGRGVTCQL 217 TLP+ ++ +GG +TG +GA ++R N F AT G+ + L R + +L Sbjct: 159 TLPKIHSRRVNIGGKTVTITGISKGAGMIRPNMATMLGFLATDA-GIAQPLLRQLAIEL 216
>ARGJ_BURPS (Q63QK7) Arginine biosynthesis bifunctional protein argJ [Includes:| Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine acetyltransferase) (Ornithine transacetylase) (OATase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate syn Length = 413 Score = 27.7 bits (60), Expect = 7.3 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Frame = +2 Query: 41 TLPRDRAKMFGVGGIVSDLTGGLRGAHLMRKN---ALDFNDFGATVMDGVTELLGRGVTC 211 TLP+ ++ + G LTG +GA +++ N L F F A V V + L + V Sbjct: 163 TLPKAASRQVTIDGHTITLTGISKGAGMIKPNMATMLGFLAFDAKVAQPVLDALAKDVAD 222 Query: 212 QLISSTNVD 238 + +D Sbjct: 223 HSFNCITID 231
>FKBP2_PODAN (Q86ZF2) FK506-binding protein 2 precursor (EC 5.2.1.8)| (Peptidyl-prolyl cis-trans isomerase) (PPIase) (Rotamase) Length = 185 Score = 27.3 bits (59), Expect = 9.5 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%) Frame = -3 Query: 237 STLV---ELMSWQVTPRPRSSVTPSMTVAPKSLKSS 139 STLV EL+ + P+P S VT S T AP+S S+ Sbjct: 117 STLVFETELVGIEGVPKPESIVTKSATDAPESTASA 152
>GUAC_CLOAB (Q97DK4) GMP reductase (EC 1.7.1.7) (Guanosine 5'-monophosphate| oxidoreductase) (Guanosine monophosphate reductase) Length = 327 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -2 Query: 136 VLAHEVGAPEAPRQVAHDAADA 71 V+A VG PEA R++ H ADA Sbjct: 143 VIAGNVGTPEAVRELEHAGADA 164
>RAPH1_HUMAN (Q70E73) Ras-associated and pleckstrin homology domains-containing| protein 1 (RAPH1) (Lamellipodin) (Proline-rich EVH1 ligand 2) (PREL-2) (Protein RMO1) (Amyotrophic lateral sclerosis 2 chromosomal region candidate 9 gene protein) Length = 1302 Score = 27.3 bits (59), Expect = 9.5 Identities = 20/66 (30%), Positives = 28/66 (42%) Frame = -3 Query: 267 PTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRWAPRRPPVRSL 88 P P PP + S ++ + V P+ P++ PK SS + P PP SL Sbjct: 922 PPPPTPPAMESQPLKPVPANVAPQS----PPAVKAKPKWQPSSIPVPSPDFPPPPPESSL 977 Query: 87 TMPPTP 70 PP P Sbjct: 978 VFPPPP 983
>NPAS3_HUMAN (Q8IXF0) Neuronal PAS domain protein 3 (Neuronal PAS3) (Member of| PAS protein 6) (MOP6) Length = 933 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -3 Query: 204 TPRPRSSVTPSMTVAPKSLKSSAFLRMR 121 TP P S +PS+ +L+ S F+RM+ Sbjct: 241 TPEPVESTSPSLLTTDNTLERSFFIRMK 268
>ARGJ_BORPA (Q7W3S6) Arginine biosynthesis bifunctional protein argJ [Includes:| Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine acetyltransferase) (Ornithine transacetylase) (OATase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate syn Length = 408 Score = 27.3 bits (59), Expect = 9.5 Identities = 18/59 (30%), Positives = 30/59 (50%) Frame = +2 Query: 41 TLPRDRAKMFGVGGIVSDLTGGLRGAHLMRKNALDFNDFGATVMDGVTELLGRGVTCQL 217 TLP+ ++ +GG +TG +GA ++R N F AT G+ + L R + +L Sbjct: 159 TLPKIHSRRVDIGGKTVTITGISKGAGMIRPNMATMLGFLATDA-GIAQPLLRQLAIEL 216
>ARGJ_BORBR (Q7WF54) Arginine biosynthesis bifunctional protein argJ [Includes:| Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine acetyltransferase) (Ornithine transacetylase) (OATase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate syn Length = 408 Score = 27.3 bits (59), Expect = 9.5 Identities = 18/59 (30%), Positives = 30/59 (50%) Frame = +2 Query: 41 TLPRDRAKMFGVGGIVSDLTGGLRGAHLMRKNALDFNDFGATVMDGVTELLGRGVTCQL 217 TLP+ ++ +GG +TG +GA ++R N F AT G+ + L R + +L Sbjct: 159 TLPKIHSRRVDIGGKTVTITGISKGAGMIRPNMATMLGFLATDA-GIAQPLLRQLAIEL 216
>GUAC_BACSK (Q5WD10) GMP reductase (EC 1.7.1.7) (Guanosine 5'-monophosphate| oxidoreductase) (Guanosine monophosphate reductase) Length = 328 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -2 Query: 136 VLAHEVGAPEAPRQVAHDAADA 71 V+A VG PEA R++ H ADA Sbjct: 144 VIAGNVGTPEAVRELEHAGADA 165
>RIN3_HUMAN (Q8TB24) Ras and Rab interactor 3 (Ras interaction/interference| protein 3) Length = 984 Score = 27.3 bits (59), Expect = 9.5 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = -3 Query: 204 TPRPRSSVTPSMTVAPKSLKSSAFLRMRWAPRRPPVRSLTMPPTP 70 T +P P+ + P S +S RWAPRRPP +P P Sbjct: 249 TDQPPLGNCPARPLPPTSDATSP--TSRWAPRRPPPPPPVLPLQP 291
>FLT3L_HUMAN (P49771) SL cytokine precursor (Fms-related tyrosine kinase 3| ligand) (Flt3 ligand) (Flt3L) Length = 235 Score = 27.3 bits (59), Expect = 9.5 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 14/48 (29%) Frame = -3 Query: 276 ASAPTFPRPPLLWSTLVEL----------MSWQ----VTPRPRSSVTP 175 A+APT P+PPLL L+ + + WQ TPRP V P Sbjct: 176 ATAPTAPQPPLLLLLLLPVGLLLLAAAWCLHWQRTRRRTPRPGEQVPP 223 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,895,254 Number of Sequences: 219361 Number of extensions: 615522 Number of successful extensions: 2734 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 2615 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2719 length of database: 80,573,946 effective HSP length: 91 effective length of database: 60,612,095 effective search space used: 1454690280 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
