ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl15h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PROP_CAVPO (Q64181) Properdin precursor (Factor P) 28 4.3
2PROP_MOUSE (P11680) Properdin precursor (Factor P) 28 5.7
3SYI1_OCEIH (Q8ER41) Isoleucyl-tRNA synthetase 1 (EC 6.1.1.5) (Is... 27 9.7

>PROP_CAVPO (Q64181) Properdin precursor (Factor P)|
          Length = 470

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -2

Query: 281 CGIAAVPGRPVHRRRCSATPGSLSRRRAPSTCLW 180
           C ++   G  +  RRC    G  S  +AP T  W
Sbjct: 88  CSVSCSEGSQLRHRRCIGWGGQCSENKAPGTLEW 121



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>PROP_MOUSE (P11680) Properdin precursor (Factor P)|
          Length = 464

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 15/60 (25%), Positives = 19/60 (31%)
 Frame = -2

Query: 281 CGIAAVPGRPVHRRRCSATPGSLSRRRAPSTCLWXXXXXXXRPAVGRLDDPRRRPPEKPC 102
           C +    G  +  RRC    G  S   AP T  W       +P    +       P  PC
Sbjct: 85  CSVTCSEGSQLRHRRCVGRGGQCSENVAPGTLEWQLQACEDQPCCPEMGGWSEWGPWGPC 144



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>SYI1_OCEIH (Q8ER41) Isoleucyl-tRNA synthetase 1 (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase 1) (IleRS 1)
          Length = 918

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 191 YWVPADEREILASQSSGGGEQDGRAPLLYRTFRVKG 298
           YW P+ E  +  ++      QD R+P +Y  F VKG
Sbjct: 185 YWSPSSESALAEAEIE---YQDKRSPSIYVAFEVKG 217


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,014,906
Number of Sequences: 219361
Number of extensions: 669909
Number of successful extensions: 1728
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1728
length of database: 80,573,946
effective HSP length: 88
effective length of database: 61,270,178
effective search space used: 1470484272
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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