ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl15h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK106591.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
2gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome... 107 3e-20
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
4ref|XM_480349.1| Oryza sativa (japonica cultivar-group), mRNA 56 9e-05
5dbj|AK101719.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
6ref|NM_113399.1| Arabidopsis thaliana DNA binding AT3G24870 mRNA... 44 0.34
7ref|NM_113400.3| Arabidopsis thaliana DNA binding AT3G24880 mRNA... 44 0.34
8emb|AL139413.11| Human DNA sequence from clone RP5-1033K19 on ch... 44 0.34
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
10dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
11dbj|AB028609.2| Arabidopsis thaliana genomic DNA, chromosome 3, ... 44 0.34
12gb|AE002109.1| Ureaplasma parvum serovar 3 str. ATCC 700970 sect... 42 1.4
13gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 42 1.4
14emb|CR548622.8| Zebrafish DNA sequence from clone DKEY-189A9 in ... 42 1.4
15gb|AE015451.1| Pseudomonas putida KT2440 complete genome 42 1.4
16ref|NM_010414.1| Mus musculus Huntington disease gene homolog (H... 40 5.4
17emb|Z71781.1|SCCIVL37K S.cerevisiae chromosome IV left arm (EU) ... 40 5.4
18emb|AL646047.9| Mouse DNA sequence from clone RP23-69P8 on chrom... 40 5.4
19dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 40 5.4
20gb|AC121493.1| Homo sapiens chromosome 3 clone RP11-88H12, compl... 40 5.4
21gb|AC104331.2| Homo sapiens chromosome 3 clone RP11-543A18, comp... 40 5.4
22emb|BX537350.25| Zebrafish DNA sequence from clone CH211-257F16 ... 40 5.4
23dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
24gb|AC009476.3| Homo sapiens BAC clone RP11-207O14 from 2, comple... 40 5.4
25dbj|AP003878.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
26emb|AJ277866.1|PPR277866 Pimephales promelas mRNA for cytochrome... 40 5.4
27dbj|AP004619.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
28emb|CT027575.9| Zebrafish DNA sequence from clone DKEY-72G22 in ... 40 5.4
29emb|X53466.1|SCPRP9 Yeast prp9 gene for PRP9 protein involved in... 40 5.4
30emb|Z74078.1|SCYDL030W S.cerevisiae chromosome IV reading frame ... 40 5.4
31gb|U24233.1|MMU24233 Mus musculus huntingtin (Hd) mRNA, complete... 40 5.4
32gb|DQ222992.1| Pinus taeda temperature-induced lipocalin (TIL) m... 40 5.4
33gb|AC165976.2| Gallus gallus BAC clone CH261-89G17 from chromoso... 40 5.4
34gb|L28827.1|MUSHDH Mouse Huntington's Disease gene homologue (Hd... 40 5.4
35emb|AL669921.13| Mouse DNA sequence from clone RP23-67P9 on chro... 40 5.4
36gb|L23313.1|MUSHDPROB Mouse alternatively spliced HD protein mRN... 40 5.4
37gb|L23312.1|MUSHDPROA Mouse HD protein mRNA, complete cds 40 5.4
38gb|AC105344.3| Homo sapiens BAC clone RP11-585B9 from 2, complet... 40 5.4

>dbj|AK106591.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-111-G06, full
           insert sequence
          Length = 2630

 Score =  135 bits (68), Expect = 1e-28
 Identities = 158/188 (84%)
 Strand = Plus / Plus

                                                                       
Query: 214 aataacattgtgcagttcaagtctgtacatagacaacctaaagaatgcaaagagcgccat 273
           |||| ||||| ||| |||||||||||| |||| ||||||||||  ||||| |||||  ||
Sbjct: 3   aatagcattgagcaattcaagtctgtatataggcaacctaaagggtgcaaggagcgttat 62

                                                                       
Query: 274 agggttctggtggataaaagctctggtgatggtgctgacagtgcagaagactctggttca 333
           | |||||| ||||||||||  |||||||||||||| || |||||||| ||||||||||||
Sbjct: 63  aaggttctcgtggataaaaattctggtgatggtgccgatagtgcagaggactctggttca 122

                                                                       
Query: 334 tcccaacagtatcatttcaccatacctggcattccacagggtagcgccaggcagttgttc 393
           || ||||| |||||||| ||  | || ||||||||| |||| || || |||||||| |||
Sbjct: 123 tctcaacactatcattttacgttgccaggcattccaaagggaagtgctaggcagttattc 182

                   
Query: 394 cagcgact 401
           || |||||
Sbjct: 183 caacgact 190



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>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08,
              complete sequence
          Length = 142196

 Score =  107 bits (54), Expect = 3e-20
 Identities = 102/118 (86%)
 Strand = Plus / Minus

                                                                          
Query: 233    agtctgtacatagacaacctaaagaatgcaaagagcgccatagggttctggtggataaaa 292
              |||||||| |||| ||||||||||  ||||| |||||  ||| |||||| ||||||||||
Sbjct: 117876 agtctgtatataggcaacctaaagggtgcaaggagcgttataaggttctcgtggataaaa 117817

                                                                        
Query: 293    gctctggtgatggtgctgacagtgcagaagactctggttcatcccaacagtatcattt 350
                |||||||||||||| || |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 117816 attctggtgatggtgccgatagtgcagaggactctggttcatctcaacactatcattt 117759



 Score =  105 bits (53), Expect = 1e-19
 Identities = 77/85 (90%)
 Strand = Plus / Minus

                                                                          
Query: 150    tcaggctcttgttgtccttgtccatgactcgggtcaaaattgggaattagtaagcgatgc 209
              |||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||| ||
Sbjct: 118212 tcaggctcttgttgtccttgtccacgacttgggtcaaaactgggaattagtaagcgacgc 118153

                                       
Query: 210    aatcaataacattgtgcagttcaag 234
              ||| |||| ||||| ||| ||||||
Sbjct: 118152 aattaatagcattgagcaattcaag 118128



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                          
Query: 57     taaaattataaagatcatcactaataaggaccgtgggagaaaag 100
              ||||||||||||||| ||||| |||| ||| |||||||||||||
Sbjct: 119178 taaaattataaagataatcaccaatagggatcgtgggagaaaag 119135



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                          
Query: 127    ggtggatggtcaaacttcgaggatcagg 154
              ||||||||||||||||||||||||||||
Sbjct: 118339 ggtggatggtcaaacttcgaggatcagg 118312



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  107 bits (54), Expect = 3e-20
 Identities = 102/118 (86%)
 Strand = Plus / Minus

                                                                            
Query: 233      agtctgtacatagacaacctaaagaatgcaaagagcgccatagggttctggtggataaaa 292
                |||||||| |||| ||||||||||  ||||| |||||  ||| |||||| ||||||||||
Sbjct: 29339219 agtctgtatataggcaacctaaagggtgcaaggagcgttataaggttctcgtggataaaa 29339160

                                                                          
Query: 293      gctctggtgatggtgctgacagtgcagaagactctggttcatcccaacagtatcattt 350
                  |||||||||||||| || |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 29339159 attctggtgatggtgccgatagtgcagaggactctggttcatctcaacactatcattt 29339102



 Score =  105 bits (53), Expect = 1e-19
 Identities = 77/85 (90%)
 Strand = Plus / Minus

                                                                            
Query: 150      tcaggctcttgttgtccttgtccatgactcgggtcaaaattgggaattagtaagcgatgc 209
                |||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||| ||
Sbjct: 29339555 tcaggctcttgttgtccttgtccacgacttgggtcaaaactgggaattagtaagcgacgc 29339496

                                         
Query: 210      aatcaataacattgtgcagttcaag 234
                ||| |||| ||||| ||| ||||||
Sbjct: 29339495 aattaatagcattgagcaattcaag 29339471



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                            
Query: 57       taaaattataaagatcatcactaataaggaccgtgggagaaaag 100
                ||||||||||||||| ||||| |||| ||| |||||||||||||
Sbjct: 29340521 taaaattataaagataatcaccaatagggatcgtgggagaaaag 29340478



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                            
Query: 127      ggtggatggtcaaacttcgaggatcagg 154
                ||||||||||||||||||||||||||||
Sbjct: 29339682 ggtggatggtcaaacttcgaggatcagg 29339655



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>ref|XM_480349.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4178

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 55/64 (85%)
 Strand = Plus / Plus

                                                                        
Query: 132  atggtcaaacttcgaggatcaggctcttgttgtccttgtccatgactcgggtcaaaattg 191
            |||||| | ||| |||||||||||||||||||| ||||| |||||   ||||||||| ||
Sbjct: 3602 atggtcgagctttgaggatcaggctcttgttgtgcttgtacatgatatgggtcaaaactg 3661

                
Query: 192  ggaa 195
            ||||
Sbjct: 3662 ggaa 3665



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 81/101 (80%)
 Strand = Plus / Plus

                                                                        
Query: 298  ggtgatggtgctgacagtgcagaagactctggttcatcccaacagtatcatttcaccata 357
            ||||||||||| || || ||||| ||||| || ||||| ||||| ||||| | |||  | 
Sbjct: 3768 ggtgatggtgcggatagcgcagatgactcgggctcatcacaacactatcagtccacattg 3827

                                                     
Query: 358  cctggcattccacagggtagcgccaggcagttgttccagcg 398
            |||||||| ||| ||||||| || || ||  ||||||||||
Sbjct: 3828 cctggcatcccaaagggtagtgctagacacctgttccagcg 3868



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>dbj|AK101719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033060P10, full
            insert sequence
          Length = 4177

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 55/64 (85%)
 Strand = Plus / Plus

                                                                        
Query: 132  atggtcaaacttcgaggatcaggctcttgttgtccttgtccatgactcgggtcaaaattg 191
            |||||| | ||| |||||||||||||||||||| ||||| |||||   ||||||||| ||
Sbjct: 3601 atggtcgagctttgaggatcaggctcttgttgtgcttgtacatgatatgggtcaaaactg 3660

                
Query: 192  ggaa 195
            ||||
Sbjct: 3661 ggaa 3664



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 81/101 (80%)
 Strand = Plus / Plus

                                                                        
Query: 298  ggtgatggtgctgacagtgcagaagactctggttcatcccaacagtatcatttcaccata 357
            ||||||||||| || || ||||| ||||| || ||||| ||||| ||||| | |||  | 
Sbjct: 3767 ggtgatggtgcggatagcgcagatgactcgggctcatcacaacactatcagtccacattg 3826

                                                     
Query: 358  cctggcattccacagggtagcgccaggcagttgttccagcg 398
            |||||||| ||| ||||||| || || ||  ||||||||||
Sbjct: 3827 cctggcatcccaaagggtagtgctagacacctgttccagcg 3867



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>ref|NM_113399.1| Arabidopsis thaliana DNA binding AT3G24870 mRNA, complete cds
          Length = 5526

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                          
Query: 278  ttctggtggataaaagctctggtgatggtgctgacagtgcagaaga 323
            ||||| |||||||||   |||||||||| ||||| |||||||||||
Sbjct: 3287 ttctgatggataaaactgctggtgatggggctgatagtgcagaaga 3332



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 145  gaggatcaggctcttgttgtccttgtccatga 176
            ||||||||||| ||||||||||| || |||||
Sbjct: 3154 gaggatcaggcgcttgttgtcctggtgcatga 3185



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>ref|NM_113400.3| Arabidopsis thaliana DNA binding AT3G24880 mRNA, complete cds
          Length = 6089

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                          
Query: 278  ttctggtggataaaagctctggtgatggtgctgacagtgcagaaga 323
            ||||| |||||||||   |||||||||| ||||| |||||||||||
Sbjct: 3302 ttctgatggataaaactgctggtgatggggctgatagtgcagaaga 3347



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 145  gaggatcaggctcttgttgtccttgtccatga 176
            ||||||||||| ||||||||||| || |||||
Sbjct: 3169 gaggatcaggcgcttgttgtcctggtgcatga 3200



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>emb|AL139413.11| Human DNA sequence from clone RP5-1033K19 on chromosome 1 Contains a
             transcription elongation factor B (SIII) polypeptide 1
             (15kDa, elongin C) (TCEB1) pseudogene, a pseudogene
             similar to part of BET1 homolog (S. cerevisiae) (BET1),
             the RPE65 gene for 65kDa retinal pigment
             epithelium-specific protein and the 3' end of the gene for
              cell cycle control protein SDP35 (SDP35), complete
             sequence
          Length = 103139

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 209   caatcaataacattgtgcagtt 230
             ||||||||||||||||||||||
Sbjct: 41726 caatcaataacattgtgcagtt 41705



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 12       ttctcaagttccatcacagatg 33
                ||||||||||||||||||||||
Sbjct: 21781524 ttctcaagttccatcacagatg 21781545



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>dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0534A03
          Length = 153170

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 12    ttctcaagttccatcacagatg 33
             ||||||||||||||||||||||
Sbjct: 98707 ttctcaagttccatcacagatg 98728



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>dbj|AB028609.2| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K7P8
          Length = 78529

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                           
Query: 278   ttctggtggataaaagctctggtgatggtgctgacagtgcagaaga 323
             ||||| |||||||||   |||||||||| ||||| |||||||||||
Sbjct: 61645 ttctgatggataaaactgctggtgatggggctgatagtgcagaaga 61600



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                           
Query: 278   ttctggtggataaaagctctggtgatggtgctgacagtgcagaaga 323
             ||||| |||||||||   |||||||||| ||||| |||||||||||
Sbjct: 50419 ttctgatggataaaactgctggtgatggggctgatagtgcagaaga 50374



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>gb|AE002109.1| Ureaplasma parvum serovar 3 str. ATCC 700970 section 10 of 59 of the
            complete genome
          Length = 11300

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 54   taataaaattataaagatcat 74
            |||||||||||||||||||||
Sbjct: 3227 taataaaattataaagatcat 3207



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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 157     cttgttgtccttgtccatgac 177
               |||||||||||||||||||||
Sbjct: 3557352 cttgttgtccttgtccatgac 3557332



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>emb|CR548622.8| Zebrafish DNA sequence from clone DKEY-189A9 in linkage group 11,
             complete sequence
          Length = 137993

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 51    tactaataaaattataaagat 71
             |||||||||||||||||||||
Sbjct: 37150 tactaataaaattataaagat 37170



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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 157     cttgttgtccttgtccatgac 177
               |||||||||||||||||||||
Sbjct: 3877880 cttgttgtccttgtccatgac 3877860



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>ref|NM_010414.1| Mus musculus Huntington disease gene homolog (Hdh), mRNA
          Length = 10081

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 295  tctggtgatggtgctgacag 314
            ||||||||||||||||||||
Sbjct: 3056 tctggtgatggtgctgacag 3037



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>emb|Z71781.1|SCCIVL37K S.cerevisiae chromosome IV left arm (EU) DNA segment (36687 bp)
          Length = 36687

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    agatgagcaatatggtgaat 48
             ||||||||||||||||||||
Sbjct: 30393 agatgagcaatatggtgaat 30412



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>emb|AL646047.9| Mouse DNA sequence from clone RP23-69P8 on chromosome 11 Contains the
             Myo1g gene for myosin 1G, a novel gene, a ribosomal
             protein L21 (Rpl21) pseudogene, the 5' end of a novel gene
             and two CpG islands, complete sequence
          Length = 93553

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 305   gtgctgacagtgcagaagac 324
             ||||||||||||||||||||
Sbjct: 89385 gtgctgacagtgcagaagac 89404



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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    gatgtcttctggtggtggat 133
              ||||||||||||||||||||
Sbjct: 979812 gatgtcttctggtggtggat 979831



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>gb|AC121493.1| Homo sapiens chromosome 3 clone RP11-88H12, complete sequence
          Length = 178780

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    taataaaattataaagatca 73
             ||||||||||||||||||||
Sbjct: 35148 taataaaattataaagatca 35167



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>gb|AC104331.2| Homo sapiens chromosome 3 clone RP11-543A18, complete sequence
          Length = 201049

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     taataaaattataaagatca 73
              ||||||||||||||||||||
Sbjct: 192301 taataaaattataaagatca 192320



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>emb|BX537350.25| Zebrafish DNA sequence from clone CH211-257F16 in linkage group 1,
              complete sequence
          Length = 186493

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 276    ggttctggtggataaaagctctggtgatggtgctga 311
              ||||||||| ||| ||||||||||| || |||||||
Sbjct: 107428 ggttctggtcgattaaagctctggttattgtgctga 107463



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                           
Query: 152     aggctcttgttgtccttgtccatgactcgggtcaaaattgggaa 195
               ||||||||||||| ||||| |||||   ||||||||| ||||||
Sbjct: 4523097 aggctcttgttgtgcttgtacatgatatgggtcaaaactgggaa 4523054



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>gb|AC009476.3| Homo sapiens BAC clone RP11-207O14 from 2, complete sequence
          Length = 184406

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 278    ttctggtggataaaagctct 297
              ||||||||||||||||||||
Sbjct: 147872 ttctggtggataaaagctct 147891



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>dbj|AP003878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1120_C08
          Length = 150300

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 152   aggctcttgttgtccttgtccatgactcgggtcaaaattgggaa 195
             ||||||||||||| ||||| |||||   ||||||||| ||||||
Sbjct: 46945 aggctcttgttgtgcttgtacatgatatgggtcaaaactgggaa 46902



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>emb|AJ277866.1|PPR277866 Pimephales promelas mRNA for cytochrome P450 aromatase (cyp19 gene)
          Length = 2688

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 300  tgatggtgctgacagtgcag 319
            ||||||||||||||||||||
Sbjct: 1751 tgatggtgctgacagtgcag 1732



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>dbj|AP004619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0583B06
          Length = 134442

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 152   aggctcttgttgtccttgtccatgactcgggtcaaaattgggaa 195
             ||||||||||||| ||||| |||||   ||||||||| ||||||
Sbjct: 88987 aggctcttgttgtgcttgtacatgatatgggtcaaaactgggaa 88944



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>emb|CT027575.9| Zebrafish DNA sequence from clone DKEY-72G22 in linkage group 22,
             complete sequence
          Length = 39041

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 276   ggttctggtggataaaagctctggtgatggtgctga 311
             ||||||||| ||| ||||||||||| || |||||||
Sbjct: 24284 ggttctggtcgattaaagctctggttattgtgctga 24249



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>emb|X53466.1|SCPRP9 Yeast prp9 gene for PRP9 protein involved in pre-mRNA splicing
          Length = 2332

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 29   agatgagcaatatggtgaat 48
            ||||||||||||||||||||
Sbjct: 1099 agatgagcaatatggtgaat 1118



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>emb|Z74078.1|SCYDL030W S.cerevisiae chromosome IV reading frame ORF YDL030w
          Length = 2135

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 29  agatgagcaatatggtgaat 48
           ||||||||||||||||||||
Sbjct: 848 agatgagcaatatggtgaat 867



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>gb|U24233.1|MMU24233 Mus musculus huntingtin (Hd) mRNA, complete cds
          Length = 10033

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 295  tctggtgatggtgctgacag 314
            ||||||||||||||||||||
Sbjct: 3016 tctggtgatggtgctgacag 2997



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>gb|DQ222992.1| Pinus taeda temperature-induced lipocalin (TIL) mRNA, complete cds
          Length = 549

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 275 gggttctggtggataaaagctctg 298
           |||||||||||||| |||||||||
Sbjct: 514 gggttctggtggattaaagctctg 537



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>gb|AC165976.2| Gallus gallus BAC clone CH261-89G17 from chromosome ul, complete sequence
          Length = 176724

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     aataaaattataaagatcat 74
              ||||||||||||||||||||
Sbjct: 124488 aataaaattataaagatcat 124469



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>gb|L28827.1|MUSHDH Mouse Huntington's Disease gene homologue (Hdh) mRNA, complete cds
          Length = 9998

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 295  tctggtgatggtgctgacag 314
            ||||||||||||||||||||
Sbjct: 2975 tctggtgatggtgctgacag 2956



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>emb|AL669921.13| Mouse DNA sequence from clone RP23-67P9 on chromosome 2, complete
              sequence
          Length = 203592

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 297    tggtgatggtgctgacagtg 316
              ||||||||||||||||||||
Sbjct: 116712 tggtgatggtgctgacagtg 116731



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>gb|L23313.1|MUSHDPROB Mouse alternatively spliced HD protein mRNA, complete cds
          Length = 8552

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 295  tctggtgatggtgctgacag 314
            ||||||||||||||||||||
Sbjct: 3003 tctggtgatggtgctgacag 2984



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>gb|L23312.1|MUSHDPROA Mouse HD protein mRNA, complete cds
          Length = 9992

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 295  tctggtgatggtgctgacag 314
            ||||||||||||||||||||
Sbjct: 3003 tctggtgatggtgctgacag 2984



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>gb|AC105344.3| Homo sapiens BAC clone RP11-585B9 from 2, complete sequence
          Length = 35713

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   tggtgatggtgctgacagtg 316
             ||||||||||||||||||||
Sbjct: 24291 tggtgatggtgctgacagtg 24272


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,933,198
Number of Sequences: 3902068
Number of extensions: 3933198
Number of successful extensions: 83117
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82936
Number of HSP's gapped (non-prelim): 176
length of query: 401
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 379
effective length of database: 17,147,199,772
effective search space: 6498788713588
effective search space used: 6498788713588
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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