>KCNC3_RAT (Q01956) Potassium voltage-gated channel subfamily C member 3|
           (Voltage-gated potassium channel subunit Kv3.3)
           (KSHIIID)
          Length = 889

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 31  TASEPQSVTPTAAPDSFSRRHRCHPRLELLHPLSLYTAISFRTTGRDC 174
           +AS PQS+T   +  S    HR  PR  L  PLSL   ++    GR+C
Sbjct: 827 SASHPQSLTLCISVPSSC--HRLRPRETLGFPLSLPPRLATGNGGREC 872

>CP2B4_RABIT (P00178) Cytochrome P450 2B4 (EC 1.14.14.1) (CYPIIB4) (P450-LM2)|
           (Isozyme 2) (P450 types B0 and B1)
          Length = 491

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
 Frame = +3

Query: 129 IPIYRNLLQNHRSGLL-----LRFPVGDPPGVTFVFLGSLVVDLLENLEIVKR*CEPXSE 293
           +P+  NLLQ  R GLL     LR   GD   V  V+LGS  V +L   + ++      +E
Sbjct: 37  LPVLGNLLQMDRKGLLRSFLRLREKYGD---VFTVYLGSRPVVVLCGTDAIREALVDQAE 93

Query: 294 LFS-------LGLTF*GYSVI 335
            FS       +   F GY VI
Sbjct: 94  AFSGRGKIAVVDPIFQGYGVI 114

>US10_HHV11 (P06486) Virion protein US10|
          Length = 312

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +1

Query: 10  AEHSSQATASEPQSVTPTAAPDSFSRRHRCHPRLELLHPLSLYTAISFRTTG 165
           A H   A    P    P A+PD FS +H  + R      + ++TA+    TG
Sbjct: 102 ANHVRLAGLYSPGKYAPLASPDPFSPQHGAYARAR----VGIHTAVRVPPTG 149

>CP2B5_RABIT (P12789) Cytochrome P450 2B5 (EC 1.14.14.1) (CYPIIB5) (P450 type|
           B2) (P450 form HP1)
          Length = 491

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +3

Query: 129 IPIYRNLLQNHRSGLL-----LRFPVGDPPGVTFVFLGSLVVDLLENLEIVKR*CEPXSE 293
           +P+  NLLQ  R GLL     LR   GD   V  V+LGS  V +L   + ++      +E
Sbjct: 37  LPVLGNLLQMDRKGLLRSFLRLREKYGD---VFTVYLGSRPVVVLCGTDAIREALVDQAE 93

Query: 294 LFS 302
            FS
Sbjct: 94  AFS 96

>RAPH1_HUMAN (Q70E73) Ras-associated and pleckstrin homology domains-containing|
           protein 1 (RAPH1) (Lamellipodin) (Proline-rich EVH1
           ligand 2) (PREL-2) (Protein RMO1) (Amyotrophic lateral
           sclerosis 2 chromosomal region candidate 9 gene protein)
          Length = 1302

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 306 PEKKVHXVAHITSLLSPNSPANQPLDYP 223
           P  K+H V HIT +  P  P   P+  P
Sbjct: 797 PPLKIHQVQHITQVAPPTPPPPPPIPAP 824

>IPAB_SHIDY (Q03945) Invasin ipaB (62 kDa antigen)|
          Length = 580

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 303 EKKVHXVAHITSLLSPNSPANQPLDYPEIQMSLRAD 196
           E K++ +    S L P+SP  + L   EIQ++++ D
Sbjct: 155 ENKINQIQTRLSELDPDSPEKKKLSREEIQLTIKKD 190

>CHIF_DROME (Q9NK54) Protein chiffon|
          Length = 1711

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 2    THEQSTVAKQQRASHSRSHPPPLPIPSVAGTAAI 103
            T    TV + +R  +   H PP P+P+ A ++ +
Sbjct: 1111 TEISETVKRMRRGQNKYDHSPPAPVPTPATSSPV 1144


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,926,632
Number of Sequences: 219361
Number of extensions: 802486
Number of successful extensions: 2523
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2521
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)