>DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged DNA-binding|
           protein 1a) (DDB1a)
          Length = 1088

 Score =  187 bits (474), Expect = 7e-48
 Identities = 86/93 (92%), Positives = 90/93 (96%)
 Frame = +2

Query: 80  MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 259
           MS+WNYVVTAHKPTSV+HSCVGNFT P +LNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG
Sbjct: 1   MSSWNYVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 60

Query: 260 RIATIELFRPHNEAQDFLFIATERYKFCVLQWD 358
           RIAT+ELFRPH EAQDFLFIATERYKFCVLQWD
Sbjct: 61  RIATLELFRPHGEAQDFLFIATERYKFCVLQWD 93

>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding|
           protein 1) (High pigmentation protein 1)
          Length = 1090

 Score =  183 bits (465), Expect = 8e-47
 Identities = 83/93 (89%), Positives = 88/93 (94%)
 Frame = +2

Query: 80  MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 259
           MS WNYVVTAHKPT+V+HSCVGNFTGP +LNLI+AKCTRIEIHLLTPQGLQPMLDVPIYG
Sbjct: 1   MSVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG 60

Query: 260 RIATIELFRPHNEAQDFLFIATERYKFCVLQWD 358
           RIAT+ELFRPH E QD LFIATERYKFCVLQWD
Sbjct: 61  RIATLELFRPHGETQDLLFIATERYKFCVLQWD 93

>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding|
           protein 1)
          Length = 1095

 Score =  177 bits (449), Expect = 6e-45
 Identities = 83/98 (84%), Positives = 88/98 (89%), Gaps = 5/98 (5%)
 Frame = +2

Query: 80  MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQG-----LQPMLD 244
           MS WNYVVTAHKPT+V+HSCVGNFTGP +LNLI+AKCTRIEIHLLTPQG     LQPMLD
Sbjct: 1   MSVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQCICLQPMLD 60

Query: 245 VPIYGRIATIELFRPHNEAQDFLFIATERYKFCVLQWD 358
           VPIYGRIAT+ELFRPH E QD LFIATERYKFCVLQWD
Sbjct: 61  VPIYGRIATLELFRPHGETQDLLFIATERYKFCVLQWD 98

>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding|
           protein 1b) (DDB1b)
          Length = 1088

 Score =  168 bits (426), Expect = 3e-42
 Identities = 77/93 (82%), Positives = 84/93 (90%)
 Frame = +2

Query: 80  MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 259
           MS WNY VTA KPT V+HSCVGNFT P +LNLIVAK TRIEIHLL+PQGLQ +LDVP+YG
Sbjct: 1   MSVWNYAVTAQKPTCVTHSCVGNFTSPQELNLIVAKSTRIEIHLLSPQGLQTILDVPLYG 60

Query: 260 RIATIELFRPHNEAQDFLFIATERYKFCVLQWD 358
           RIAT+ELFRPH EAQDFLF+ATERYKFCVLQWD
Sbjct: 61  RIATMELFRPHGEAQDFLFVATERYKFCVLQWD 93

>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding|
           protein 1) (UV-damaged DNA-binding factor) (DDB p127
           subunit) (DDBa) (UV-damaged DNA-binding protein 1)
           (UV-DDB 1) (Xeroderma pigmentosum group E-complementing
           protein) (XPCe)
          Length = 1140

 Score =  102 bits (254), Expect = 2e-22
 Identities = 45/90 (50%), Positives = 69/90 (76%)
 Frame = +2

Query: 86  TWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRI 265
           ++NYVVTA KPT+V+    G+FT    LNL++AK TR+EI+++T +GL+P+ +V +YG+I
Sbjct: 2   SYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKI 61

Query: 266 ATIELFRPHNEAQDFLFIATERYKFCVLQW 355
           A +ELFRP  E++D LFI T +Y  C+L++
Sbjct: 62  AVMELFRPKGESKDLLFILTAKYNACILEY 91

>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding|
           protein 1) (DDB p127 subunit) (DDBa) (UV-damaged
           DNA-binding protein 1) (UV-DDB 1)
          Length = 1140

 Score =  100 bits (248), Expect = 1e-21
 Identities = 44/90 (48%), Positives = 68/90 (75%)
 Frame = +2

Query: 86  TWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRI 265
           ++NYVVTA KPT+V+     +FT    LNL++AK TR+EI+++T +GL+P+ +V +YG+I
Sbjct: 2   SYNYVVTAQKPTAVNGCVTAHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKI 61

Query: 266 ATIELFRPHNEAQDFLFIATERYKFCVLQW 355
           A +ELFRP  E++D LFI T +Y  C+L++
Sbjct: 62  AVMELFRPKGESKDLLFILTAKYNACILEY 91

>DDB1_SCHPO (O13807) DNA damage-binding protein 1 (Damage-specific DNA-binding|
           protein 1)
          Length = 1072

 Score = 54.3 bits (129), Expect = 7e-08
 Identities = 25/89 (28%), Positives = 46/89 (51%)
 Frame = +2

Query: 95  YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRIATI 274
           YV   HKP+S+ ++    F      N+IVAK   +E++      L  +    I+ +I  +
Sbjct: 3   YVTYLHKPSSIRNAVFCKFVNASSWNVIVAKVNCLEVYSYENNRLCLITSANIFAKIVNV 62

Query: 275 ELFRPHNEAQDFLFIATERYKFCVLQWDA 361
           + F+P +   D + +AT+ +++  L WDA
Sbjct: 63  KAFKPVSSPTDHIIVATDSFRYFTLFWDA 91

>RSE1_ASPFU (Q4WLI5) Pre-mRNA-splicing factor rse1|
          Length = 1225

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 21/89 (23%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
 Frame = +2

Query: 95  YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 268
           Y +T   PT+++ + +G F G  +  ++ A  +++ IH   P QG + P+    ++G I 
Sbjct: 10  YSLTIQPPTAITQAILGQFAGTKEQQIVTASGSKLTIHRPDPTQGKITPIYSQDVFGIIR 69

Query: 269 TIELFRPHNEAQDFLFIATERYKFCVLQW 355
           T+  FR    ++D++ I ++  +  ++++
Sbjct: 70  TLAAFRLAGSSKDYIIIGSDSGRITIIEY 98

>RSE1_EMENI (Q5B1X8) Pre-mRNA-splicing factor rse1|
          Length = 1226

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 21/89 (23%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
 Frame = +2

Query: 95  YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 268
           Y +T   PT+++ + +G F G  +  ++ A  +++ IH   P QG + P+    ++G I 
Sbjct: 10  YSLTIQPPTAITQAILGQFAGTKEQQIVTASGSKLTIHRPDPTQGKVIPLYTQDVFGIIR 69

Query: 269 TIELFRPHNEAQDFLFIATERYKFCVLQW 355
           T+  FR     +D++ I ++  +  ++++
Sbjct: 70  TLAAFRLAGSNKDYIIIGSDSGRITIIEY 98

>RSE1_NEUCR (Q7RYR4) Pre-mRNA-splicing factor rse-1|
          Length = 1271

 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
 Frame = +2

Query: 95  YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 268
           Y +T   PT+V+ + +G F+G  +  ++ A  +R+ +    P QG +  +L   I+G + 
Sbjct: 10  YSLTIQPPTAVTQALLGQFSGTKEQQILTASGSRLTLLQPDPRQGKVNTLLSHDIFGIVR 69

Query: 269 TIELFRPHNEAQDFLFIATERYKFCVLQW 355
            I  FR     +D++ +AT+  +  ++++
Sbjct: 70  AIASFRLAGSHKDYIILATDSGRITIIEY 98

>RSE1_MAGGR (Q52E49) Pre-mRNA-splicing factor RSE1|
          Length = 1229

 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 19/89 (21%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
 Frame = +2

Query: 95  YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 268
           Y ++   P++++ + +G F+G  +  ++ A  +R+ ++   P QG + P++   ++G I 
Sbjct: 10  YSLSIQPPSTITRAILGQFSGTKEQQIVAASGSRLTLYRPDPTQGKVVPLMSHDVFGIIR 69

Query: 269 TIELFRPHNEAQDFLFIATERYKFCVLQW 355
            +  FR    ++D+L IA++  +  ++++
Sbjct: 70  DLASFRLAGSSKDYLIIASDSGRITIVEY 98

>RSE1_USTMA (Q4PGM6) Pre-mRNA-splicing factor RSE1|
          Length = 1221

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
 Frame = +2

Query: 95  YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPI----YGR 262
           Y +T     SV+ + VG F+G  Q  +IVAK +R+E  LL P      +D  +    +G 
Sbjct: 7   YNLTLQASGSVNATVVGQFSGTRQQEIIVAKGSRLE--LLRPDTQTGKVDTVLSHDAFGV 64

Query: 263 IATIELFRPHNEAQDFLFIATERYKFCVLQW 355
           I ++  FR    ++D++ + ++  +  +L++
Sbjct: 65  IRSLAAFRLTGGSKDYVIVGSDSGRIVILEY 95

>RSE1_CRYNE (Q5KP25) Pre-mRNA-splicing factor RSE1|
          Length = 1217

 Score = 34.3 bits (77), Expect = 0.077
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
 Frame = +2

Query: 101 VTAHKPTSVSHSCVGNFTG-PHQLNLIVAKCTRIEIHLL--TPQGLQPMLDVPIYGRIAT 271
           +T   PT+VS + VG+F+G   Q  L V   T++EI  L  T   L  ++    +G I  
Sbjct: 6   LTLSSPTNVSTAVVGSFSGSKSQEILCVRGGTKLEIFKLNATTGQLDTIVSTEAFGTIRN 65

Query: 272 IELFRPHNEAQDFLFIATERYKFCVLQW 355
           I  FR     +D++   ++  +  +L++
Sbjct: 66  IAGFRLAGMTKDYILATSDSGRLSILEF 93

>RIK1_SCHPO (Q10426) Silencing protein rik1|
          Length = 1040

 Score = 33.9 bits (76), Expect = 0.10
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 173 LIVAKCTRIEIHLLTP-QGLQPMLDVPIYGRIATIELFRPHNEAQDFLFIATERYKFCVL 349
           L++ +  +I I+L +   GLQ    +P++  +  I  +RP    +D+LF+      +  +
Sbjct: 28  LVLLQALKINIYLCSEVHGLQFFTSIPLFSTVKHIRPYRPPGLDRDYLFVVLNDDTYFSI 87

Query: 350 QWD 358
            WD
Sbjct: 88  YWD 90

>CENG1_HUMAN (Q99490) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,|
            ankyrin repeat and pleckstrin homology domains 2)
            (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE)
            (GTP-binding and GTPase activating protein 2) (GGAP2)
          Length = 1192

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 246  CPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSAS 347
            CP  GGS  ++ SA T    T++  PRR +S+AS
Sbjct: 1148 CPGEGGSAATTPSAATTPSITATPSPRRRSSAAS 1181

>CENG1_RAT (Q8CGU4) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,|
            ankyrin repeat and pleckstrin homology domains 2)
            (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE)
          Length = 1186

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 246  CPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSAS 347
            CP  GGS  ++ SA T    T++  PRR +S+AS
Sbjct: 1142 CPGEGGSTATTPSAATTPSITATPSPRRRSSAAS 1175

>CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,|
            ankyrin repeat and pleckstrin homology domains 2)
            (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE)
          Length = 1186

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 246  CPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSAS 347
            CP  GGS  ++ SA T    T++  PRR +S+AS
Sbjct: 1142 CPGEGGSTATTPSAATTPSITATPSPRRRSSAAS 1175

>PKHD1_HUMAN (Q8TCZ9) Polycystic kidney and hepatic disease 1 precursor|
           (Fibrocystin) (Polyductin) (Tigmin)
          Length = 4074

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 358 VPLQDAELVPLRGNEEEVLGLIVRAEELDRRDPPIYGHVQHRL 230
           +PL  A  VP  G EE    ++V  +   R  PP+ GH + +L
Sbjct: 754 LPLITARSVPTEGTEEGSGLVLVTTQRRQRTSPPLGGHFRIQL 796

>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)|
            (Trio-associated repeat on actin)
          Length = 2365

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
 Frame = -3

Query: 349  QDAELVPLRGNEEEVLGLIVRAEELDRRDPPIYGH--VQHRLEAL------WREEVDLDA 194
            Q+ E +PLR N+   L  ++     +RR PP  GH  ++  ++AL      WR + +   
Sbjct: 2031 QELEKLPLRENKRVPLTALLNQSRGERRGPPSDGHEALEKEVQALRAQLEAWRLQGEAPQ 2090

Query: 193  GAFR 182
             A R
Sbjct: 2091 SALR 2094

>GAIPB_CUCMA (Q6EI05) DELLA protein GAIP-B (Gibberellic acid-insensitive phloem|
           protein B) (GAIP-B) (CmGAIP-B)
          Length = 587

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
 Frame = +1

Query: 187 MHPHRDPPPHATGPPAD----AGRAHIWED 264
           +HP  DPP  A  P  D     G+A +WE+
Sbjct: 8   LHPRPDPPSMAAAPNGDTYLNTGKAKLWEE 37

>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)|
          Length = 5183

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 217  ATGPPADAGRAHIWEDRDDRA 279
            +T    DAGR H W D DD A
Sbjct: 1547 STSIDEDAGRRHSWHDEDDEA 1567

>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor|
          Length = 866

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 261 GSRRSSSSALTMRPRTSSSLP-RRGTSSASCSGTQ 362
           G+  SSSS  T  P TSSS P    TSS S + TQ
Sbjct: 45  GTTNSSSSPTTSPPTTSSSPPTSTHTSSPSSTSTQ 79

>PKHB1_RAT (Q9WU68) Pleckstrin homology domain-containing family B member 1|
           (Evectin-1)
          Length = 223

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 15/52 (28%)
 Frame = -1

Query: 264 ILPYMGTSSIGWRPCGVRRWISMRV---------------HFATMRLSWWGP 154
           + P +  +S+ W+PC V R I +RV               H AT   S++GP
Sbjct: 125 VCPKVRCTSLSWKPCKVERRIWVRVYSPYQDYYEVVPPNAHEATYVRSYYGP 176

>VGLX_EHV1B (P28968) Glycoprotein X precursor|
          Length = 797

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 261 GSRRSSSSALTMRPRTSSSLP-RRGTSSASCSGTQ 362
           G+  SSSS  T  P TSSS P    TSS S + TQ
Sbjct: 45  GTTNSSSSPTTSPPTTSSSPPTSTHTSSPSSTSTQ 79

>HAK1_DEBOC (P50505) High affinity potassium transporter|
          Length = 821

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 159 GPVKLPTQEWLTLVGLCAVTT*F 91
           G V +P   WL ++G+CA T  F
Sbjct: 433 GKVYIPAINWLLMIGVCATTAGF 455


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.138    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,084,104
Number of Sequences: 219361
Number of extensions: 778831
Number of successful extensions: 3411
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3394
length of database: 80,573,946
effective HSP length: 96
effective length of database: 59,515,290
effective search space used: 1428366960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)