>SPY_HORVU (O82422) Probable UDP-N-acetylglucosamine--peptide|
           N-acetylglucosaminyltransferase SPINDLY (EC 2.4.1.-)
           (HvSPY)
          Length = 944

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 25/43 (58%), Positives = 25/43 (58%)
 Frame = +2

Query: 266 MESLQGKESXXXXXXXXXXXXXXXXXXKQQLPEGTDALRYANI 394
           MESLQGKES                  KQQLPEGTDALRYANI
Sbjct: 1   MESLQGKESNGAVPVCNGGGGAAAPPAKQQLPEGTDALRYANI 43

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
 Frame = +1

Query: 118 HRSASRY---------PRRTLPPRHDLTPPRSGARRRPPIGRKGEGDPL--SLSFIRASR 264
           HRS SR          PRR  PPR    PPR    R P   R+     L  S S   +SR
Sbjct: 303 HRSRSRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSR 362

Query: 265 DGVPPREGEQR 297
              PP++  +R
Sbjct: 363 SRSPPKKPPKR 373

>CWC22_ASPFU (Q4WKB9) Pre-mRNA-splicing factor cwc22|
          Length = 881

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +1

Query: 169 LTPPRSGARR-----RPPIGRKGEGDPLSLSFIRASRDGVPPREGEQRR 300
           L+PPR  A R     RPP GR+  GD LS S         PPR   ++R
Sbjct: 800 LSPPRRRAERSVSPQRPPPGRRPRGDSLSRS------PSPPPRYAREQR 842

>YICF_ECOLI (P25772) Hypothetical DNA ligase-like protein yicF|
          Length = 560

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 255 TNERERERVSFSLPSYWRAAPGTGAGR 175
           ++ER   ++ FS   +W+  PGTG+GR
Sbjct: 504 SDERSWSQLLFSTEQFWQQLPGTGSGR 530

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +1

Query: 139 PRRTLPPRHDLTPPRSGARRRPPIGRKGEGDPL--SLSFIRASRDGVPPREGEQR 297
           PRR  PPR    PPR    R P   R+     L  S S   +SR   PP++  +R
Sbjct: 323 PRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKR 377

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +1

Query: 139 PRRTLPPRHDLTPPRSGARRRPPIGRKGEGDPL--SLSFIRASRDGVPPREGEQR 297
           PRR  PPR    PPR    R P   R+     L  S S   +SR   PP++  +R
Sbjct: 323 PRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKR 377

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +1

Query: 139 PRRTLPPRHDLTPPRSGARRRPPIGRKGEGDPL--SLSFIRASRDGVPPREGEQR 297
           PRR  PPR    PPR    R P   R+     L  S S   +SR   PP++  +R
Sbjct: 321 PRRRTPPRRMPPPPRHRRSRSPGRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKR 375

>ARS2_HUMAN (Q9BXP5) Arsenite-resistance protein 2|
          Length = 876

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 112 GDHRSASRYPR-RTLPPRHDLTPPRSGARR 198
           G++R   R  R R  PPRH+L+PP+   RR
Sbjct: 53  GEYRDYDRNRRERFSPPRHELSPPQKRMRR 82

>TMPSD_MOUSE (Q5U405) Transmembrane protease, serine 13 (EC 3.4.21.-) (Mosaic|
           serine protease) (Membrane-type mosaic serine protease)
          Length = 543

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 19/59 (32%), Positives = 23/59 (38%)
 Frame = +1

Query: 124 SASRYPRRTLPPRHDLTPPRSGARRRPPIGRKGEGDPLSLSFIRASRDGVPPREGEQRR 300
           S +R P +  P R   TPP++   R PP        P   S  RAS    PP      R
Sbjct: 24  SPARAPPQASPAR---TPPQASPARTPPQASPARAPPPQASPARASPARAPPSRSSSGR 79

>ARS2_MOUSE (Q99MR6) Arsenite-resistance protein 2|
          Length = 875

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 112 GDHRSASRYPR-RTLPPRHDLTPPRSGARR 198
           G++R   R  R R  PPRH+L+PP+   RR
Sbjct: 53  GEYRDYDRNRRERFSPPRHELSPPQKRMRR 82

>SPY_ORYSA (Q6YZI0) Probable UDP-N-acetylglucosamine--peptide|
           N-acetylglucosaminyltransferase SPINDLY (EC 2.4.1.-)
          Length = 927

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 19/45 (42%), Positives = 23/45 (51%)
 Frame = +2

Query: 260 PGMESLQGKESXXXXXXXXXXXXXXXXXXKQQLPEGTDALRYANI 394
           PGM+S +G+ES                  KQQL +G D LRYANI
Sbjct: 4   PGMDSSEGRESNGVVPERNGGAVPA----KQQL-DGKDTLRYANI 43

>HCN3_MOUSE (O88705) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 3 (Hyperpolarization-activated
           cation channel 3) (HAC-3)
          Length = 779

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/38 (47%), Positives = 20/38 (52%)
 Frame = +1

Query: 175 PPRSGARRRPPIGRKGEGDPLSLSFIRASRDGVPPREG 288
           PP  GARR  P GR       SL   RA+ DG P R+G
Sbjct: 702 PPGGGARRLGPRGRPLSASQPSLP-QRATGDGSPRRKG 738

>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1|
          Length = 283

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 21/54 (38%), Positives = 24/54 (44%)
 Frame = +1

Query: 139 PRRTLPPRHDLTPPRSGARRRPPIGRKGEGDPLSLSFIRASRDGVPPREGEQRR 300
           PRR  PPR  L PP    RR PP  R+    P   S +R  R   P R   + R
Sbjct: 225 PRRFSPPRRMLPPPPMW-RRSPPRMRRRSRSPRRRSPVR-RRSRSPARRRHRSR 276

>PMP3_MOUSE (P05143) Proline-rich protein MP-3 (Fragment)|
          Length = 296

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = +1

Query: 109 GGDHRSASRYPRRTLP-PRHDLTPPRSGA-RRRPPIGRKGEGDPLSLSFIRASRDGVPPR 282
           GG H   ++ P  T P PR    PP +G  ++RPP G    G P           G PP 
Sbjct: 203 GGPHPRPTQGPPPTGPQPRPTQGPPPTGGPQQRPPQGPPPPGGPQP-----RPPQGPPPP 257

Query: 283 EGEQRR 300
            G Q R
Sbjct: 258 TGPQPR 263



 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +1

Query: 175 PPRSGARRRPPIGRKGEGDPLSLSFIRASRDGVPPREGEQRR 300
           PP SG++ RPP+    +G P           G PP  G Q R
Sbjct: 13  PPPSGSQPRPPVNGSQQGPPPPGGPQPRPPQGPPPPGGPQPR 54

>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member|
           A1 (RNA-binding motif protein 1)
          Length = 496

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = +1

Query: 181 RSGARRRPPIGRKGEGDPLSLSFIRASRDG----VPPREG 288
           +SG RRRPP   +      SL   R SR G    +P  EG
Sbjct: 89  QSGGRRRPPASSRNRSPSGSLRSARGSRGGTRGWLPSHEG 128

>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 21/54 (38%), Positives = 24/54 (44%)
 Frame = +1

Query: 139 PRRTLPPRHDLTPPRSGARRRPPIGRKGEGDPLSLSFIRASRDGVPPREGEQRR 300
           PRR  PPR  L PP    RR PP  R+    P   S +R  R   P R   + R
Sbjct: 247 PRRFSPPRRMLPPPPMW-RRSPPRMRRRSRSPRRRSPVR-RRSRSPGRRRHRSR 298

>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 21/54 (38%), Positives = 24/54 (44%)
 Frame = +1

Query: 139 PRRTLPPRHDLTPPRSGARRRPPIGRKGEGDPLSLSFIRASRDGVPPREGEQRR 300
           PRR  PPR  L PP    RR PP  R+    P   S +R  R   P R   + R
Sbjct: 247 PRRFSPPRRMLPPPPMW-RRSPPRMRRRSRSPRRRSPVR-RRSRSPGRRRHRSR 298

>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 21/54 (38%), Positives = 24/54 (44%)
 Frame = +1

Query: 139 PRRTLPPRHDLTPPRSGARRRPPIGRKGEGDPLSLSFIRASRDGVPPREGEQRR 300
           PRR  PPR  L PP    RR PP  R+    P   S +R  R   P R   + R
Sbjct: 247 PRRFSPPRRMLPPPPMW-RRSPPRMRRRSRSPRRRSPVR-RRSRSPGRRRHRSR 298

>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 21/54 (38%), Positives = 24/54 (44%)
 Frame = +1

Query: 139 PRRTLPPRHDLTPPRSGARRRPPIGRKGEGDPLSLSFIRASRDGVPPREGEQRR 300
           PRR  PPR  L PP    RR PP  R+    P   S +R  R   P R   + R
Sbjct: 247 PRRFSPPRRMLPPPPMW-RRSPPRMRRRSRSPRRRSPVR-RRSRSPGRRRHRSR 298

>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related|
           protein LDC2)
          Length = 305

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 21/54 (38%), Positives = 24/54 (44%)
 Frame = +1

Query: 139 PRRTLPPRHDLTPPRSGARRRPPIGRKGEGDPLSLSFIRASRDGVPPREGEQRR 300
           PRR  PPR  L PP    RR PP  R+    P   S +R  R   P R   + R
Sbjct: 247 PRRFSPPRRMLPPPPMW-RRSPPRMRRRSRSPRRRSPVR-RRSRSPGRRRHRSR 298

>LBN_HUMAN (Q86UK5) Limbin|
          Length = 1308

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +1

Query: 139 PRRTLPPRHDLTPPRSGARRRPPIGRKGEG 228
           P    PPR     PRSG   R P GR G G
Sbjct: 41  PLGAQPPRDPQVAPRSGPGLRIPPGRSGAG 70

>BUR1_NEUCR (Q871M9) Serine/threonine-protein kinase bur-1 (EC 2.7.11.22) (EC|
           2.7.11.23)
          Length = 545

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 27/81 (33%), Positives = 31/81 (38%), Gaps = 18/81 (22%)
 Frame = +1

Query: 112 GDHRSASRYPRRTLPPR-------HDLTP--PRSGARRRPPIGRKGEGDP---------L 237
           GD R  S +  R LPPR       H   P     G R RPP  R+G G P         +
Sbjct: 413 GDERVPSWHSARGLPPRPPMPADYHGSGPMDHTDGYRDRPP--RRGPGGPPGGGGGPSNV 470

Query: 238 SLSFIRASRDGVPPREGEQRR 300
                   RDG  PR  + RR
Sbjct: 471 DTYIPSYDRDGPAPRREDWRR 491

>SRA1_RAT (Q6QGW5) Steroid receptor RNA activator 1 (Steroid receptor RNA|
           activator protein) (SRAP)
          Length = 231

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 133 RYPRRTLPPRHDLTPPRSGARRRPPIG 213
           R P  + PP  D  PP S A R PP+G
Sbjct: 62  RAPETSGPPPVDHPPPSSKASRPPPMG 88

>TAU_HYLLA (Q5YCV9) Microtubule-associated protein tau|
          Length = 775

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +1

Query: 115 DHRSASRYPRRTLPPRHDLTPPRSGARRRPPI-GRKGEGD-PLSLSFIRASRDGVPPRE 285
           D  S    P   + P HD  PP++ AR    I G   EG  PL + F+      +P  E
Sbjct: 224 DESSPQDSPPSKVSPAHDGRPPQTAAREATSIPGFPAEGAIPLPVDFLSKVSTEIPASE 282

>RSMN_RAT (P63164) Small nuclear ribonucleoprotein-associated protein N|
           (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D)
          Length = 240

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +1

Query: 130 SRYP--RRTLPPRHDLTPPRSGARRRPPIGRKGEGDPLSLSFIRASRDGVPP 279
           ++YP  R T PP      P  G    PP  R   G P+ L   R +  G+PP
Sbjct: 166 TQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPP 217

>RSMN_MOUSE (P63163) Small nuclear ribonucleoprotein-associated protein N|
           (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D)
           (Tissue-specific splicing protein)
          Length = 240

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +1

Query: 130 SRYP--RRTLPPRHDLTPPRSGARRRPPIGRKGEGDPLSLSFIRASRDGVPP 279
           ++YP  R T PP      P  G    PP  R   G P+ L   R +  G+PP
Sbjct: 166 TQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPP 217

>RSMN_HUMAN (P63162) Small nuclear ribonucleoprotein-associated protein N|
           (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D)
           (Tissue-specific splicing protein)
          Length = 240

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +1

Query: 130 SRYP--RRTLPPRHDLTPPRSGARRRPPIGRKGEGDPLSLSFIRASRDGVPP 279
           ++YP  R T PP      P  G    PP  R   G P+ L   R +  G+PP
Sbjct: 166 TQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPP 217

>SRA1_MOUSE (Q80VJ2) Steroid receptor RNA activator 1 (Steroid receptor RNA|
           activator protein) (SRAP)
          Length = 220

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 133 RYPRRTLPPRHDLTPPRSGARRRPPIG 213
           R P  + PP  D  PP S A R PP+G
Sbjct: 50  RAPETSGPPPVDHPPPSSKASRPPPMG 76

>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome) (Glycoprotein
           p43)
          Length = 391

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +1

Query: 124 SASRYP---RRTLPPRHDLTPPRSGARRRPPIGRKGEGDPLSLSFIRASRDGVPPRE 285
           S+SR P   +R  PPR    PP+  A   P     G G    +S  R S  G P RE
Sbjct: 141 SSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRRE 197


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,066,054
Number of Sequences: 219361
Number of extensions: 643687
Number of successful extensions: 2145
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 2014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2132
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)