>gb|AY532594.1| Triticum aestivum minichromosomal maintenance factor (MCM2) mRNA,
           complete cds
          Length = 2923

 Score =  293 bits (148), Expect = 1e-76
 Identities = 170/176 (96%), Gaps = 1/176 (0%)
 Strand = Plus / Plus

                                                                       
Query: 46  cacgcctcctccacaggacccttctcggagcccgcggatggacgactcggagaacaacgc 105
           ||||| |||||||||||| ||| ||| || ||||||||||||||||||||||||||||||
Sbjct: 4   cacgcgtcctccacaggagcctcctccga-cccgcggatggacgactcggagaacaacgc 62

                                                                       
Query: 106 gccgtcgaccccgggctcgccgggtttcagcaccgaccggctgccgcccaacaccaccac 165
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 63  gccgtcgaccccgggctcgccgggcttcagcaccgaccggctgccgcccaacaccaccac 122

                                                                   
Query: 166 cagccgcggcgccaccgacccgtcctcctactcggacgacgatggcgaggcggagg 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 cagccgcggcgccaccgacccgtcctcctactcggacgacgatggcgaggcggagg 178

>gb|AY532593.1| Triticum aestivum minichromosomal maintenance factor (MCM2) gene,
            exons 1 through 18 and complete sequence
          Length = 8809

 Score =  264 bits (133), Expect = 1e-67
 Identities = 136/137 (99%)
 Strand = Plus / Plus

                                                                        
Query: 85   ggacgactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccg 144
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2395 ggacgactcggagaacaacgcgccgtcgaccccgggctcgccgggcttcagcaccgaccg 2454

                                                                        
Query: 145  gctgccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacga 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2455 gctgccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacga 2514

                             
Query: 205  cgatggcgaggcggagg 221
            |||||||||||||||||
Sbjct: 2515 cgatggcgaggcggagg 2531



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 71/84 (84%)
 Strand = Plus / Plus

                                                                        
Query: 3    attccccccttcccgccgagaccctagcctcatctcgccaccgcacgcctcctccacagg 62
            ||||||||||||||||||| |||||||||||  | | |  || ||||| |||||||||||
Sbjct: 2199 attccccccttcccgccgaaaccctagcctcggcgcacagccacacgcgtcctccacagg 2258

                                    
Query: 63   acccttctcggagcccgcggatgg 86
            | ||| ||| || |||||||||||
Sbjct: 2259 agcctcctccgaccccgcggatgg 2282

>dbj|AK121422.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133N01, full
           insert sequence
          Length = 3214

 Score =  194 bits (98), Expect = 8e-47
 Identities = 119/126 (94%)
 Strand = Plus / Plus

                                                                       
Query: 82  gatggacgactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccga 141
           |||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||
Sbjct: 83  gatggatgactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacaga 142

                                                                       
Query: 142 ccggctgccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcgga 201
           | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 caggctgccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcgga 202

                 
Query: 202 cgacga 207
           ||||||
Sbjct: 203 cgacga 208

>gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0057E15, complete sequence
          Length = 149035

 Score =  188 bits (95), Expect = 5e-45
 Identities = 113/119 (94%)
 Strand = Plus / Plus

                                                                         
Query: 89    gactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 148
             |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| |||||
Sbjct: 97266 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 97325

                                                                        
Query: 149   ccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 207
             ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97326 ccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 97384

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  188 bits (95), Expect = 5e-45
 Identities = 113/119 (94%)
 Strand = Plus / Plus

                                                                            
Query: 89       gactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 148
                |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| |||||
Sbjct: 16456667 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 16456726

                                                                           
Query: 149      ccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 207
                ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16456727 ccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 16456785

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  188 bits (95), Expect = 5e-45
 Identities = 113/119 (94%)
 Strand = Plus / Plus

                                                                            
Query: 89       gactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 148
                |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| |||||
Sbjct: 16547671 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 16547730

                                                                           
Query: 149      ccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 207
                ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16547731 ccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 16547789

>gb|BT015953.1| Drosophila melanogaster SD09647 full insert cDNA
          Length = 2972

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 166  cagccgcggcgccaccgacccgtcctcct 194
            ||||| ||||||||||||| |||||||||
Sbjct: 1752 cagccacggcgccaccgactcgtcctcct 1724

>gb|BT025193.1| Drosophila melanogaster FI01127 full insert cDNA
          Length = 2971

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 166  cagccgcggcgccaccgacccgtcctcct 194
            ||||| ||||||||||||| |||||||||
Sbjct: 1752 cagccacggcgccaccgactcgtcctcct 1724

>ref|XM_883457.1| Leishmania major strain Friedlin hypothetical protein (P1105.02)
           partial mRNA
          Length = 507

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 195 actcggacgacgatggcgagg 215
           |||||||||||||||||||||
Sbjct: 479 actcggacgacgatggcgagg 499

>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end
          Length = 247462

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 195   actcggacgacgatggcgagg 215
             |||||||||||||||||||||
Sbjct: 28850 actcggacgacgatggcgagg 28830

>gb|AC023740.4| Drosophila melanogaster X BAC RP98-27J18 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 163764

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 166   cagccgcggcgccaccgacccgtcctcct 194
             ||||| ||||||||||||| |||||||||
Sbjct: 58418 cagccacggcgccaccgactcgtcctcct 58390

>ref|NM_132004.2| Drosophila melanogaster CG4136-RA (CG4136), mRNA
          Length = 2983

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 166  cagccgcggcgccaccgacccgtcctcct 194
            ||||| ||||||||||||| |||||||||
Sbjct: 1765 cagccacggcgccaccgactcgtcctcct 1737

>gb|AY070708.1| Drosophila melanogaster SD01032 full length cDNA
          Length = 2647

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 166  cagccgcggcgccaccgacccgtcctcct 194
            ||||| ||||||||||||| |||||||||
Sbjct: 1429 cagccacggcgccaccgactcgtcctcct 1401

>emb|AJ234640.1|HVU234640 Hordeum vulgare genomic DNA fragment; clone MWG0904.rev
          Length = 416

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 157 caccaccaccagccgcggcgccacc 181
           |||||||||||||| ||||||||||
Sbjct: 305 caccaccaccagccacggcgccacc 281

>gb|AE003434.4| Drosophila melanogaster chromosome X, section 18 of 74 of the complete
              sequence
          Length = 303928

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 166    cagccgcggcgccaccgacccgtcctcct 194
              ||||| ||||||||||||| |||||||||
Sbjct: 287799 cagccacggcgccaccgactcgtcctcct 287771

>ref|NM_189357.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1632

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 175 cgccaccgacccgtcctcct 194
           ||||||||||||||||||||
Sbjct: 843 cgccaccgacccgtcctcct 824

>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence
          Length = 1212674

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 156    acaccaccaccagccgcggc 175
              ||||||||||||||||||||
Sbjct: 653840 acaccaccaccagccgcggc 653821

>gb|AC121858.3| Mus musculus BAC clone RP24-104B23 from chromosome 8, complete sequence
          Length = 177226

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    ctcctccacaggacccttct 70
             ||||||||||||||||||||
Sbjct: 72162 ctcctccacaggacccttct 72181

>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 202     cgacgatggcgaggcggagg 221
               ||||||||||||||||||||
Sbjct: 1468047 cgacgatggcgaggcggagg 1468028

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 175      cgccaccgacccgtcctcct 194
                ||||||||||||||||||||
Sbjct: 42357219 cgccaccgacccgtcctcct 42357238

>dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0401G10
          Length = 160704

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    cgccaccgacccgtcctcct 194
              ||||||||||||||||||||
Sbjct: 129176 cgccaccgacccgtcctcct 129195

>dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0483G10
          Length = 190721

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   cgccaccgacccgtcctcct 194
             ||||||||||||||||||||
Sbjct: 16557 cgccaccgacccgtcctcct 16576

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 163     caccagccgcggcgccaccgacccgtcc 190
               ||||||||||| |||||||||| |||||
Sbjct: 2859792 caccagccgcgccgccaccgacgcgtcc 2859819



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 157     caccaccaccagccgcggcg 176
               ||||||||||||||||||||
Sbjct: 1645167 caccaccaccagccgcggcg 1645186

>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 77      ccgcggatggacgactcgga 96
               ||||||||||||||||||||
Sbjct: 2043809 ccgcggatggacgactcgga 2043828

>emb|AL590988.11| Mouse DNA sequence from clone RP23-46C18 on chromosome 8, complete
              sequence
          Length = 183975

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     ctcctccacaggacccttct 70
              ||||||||||||||||||||
Sbjct: 181578 ctcctccacaggacccttct 181597


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,458,859
Number of Sequences: 3902068
Number of extensions: 1458859
Number of successful extensions: 118731
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117928
Number of HSP's gapped (non-prelim): 802
length of query: 221
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 199
effective length of database: 17,147,199,772
effective search space: 3412292754628
effective search space used: 3412292754628
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)