>HPS1_MACFA (Q60HF3) Hermansky-Pudlak syndrome 1 protein homolog|
          Length = 667

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
 Frame = +2

Query: 209 FASPARYFTDAAPIGNGRLGALVW---GGVTSEKLQLNHDTLWTGGPGNYTNPKAPTVLS 379
           F+ P  YFT A   G+   G+ +W   G    E LQ+  DTL T        P  P   S
Sbjct: 261 FSLPEEYFTPAPSPGDQSSGSTIWLEGGTPPMEALQIAEDTLQT------LVPHCPAPSS 314

Query: 380 ESRSLVDXGL 409
             R  +D  +
Sbjct: 315 PRRIFLDANV 324

>HPS1_HUMAN (Q92902) Hermansky-Pudlak syndrome 1 protein|
          Length = 700

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +2

Query: 209 FASPARYFTDAAPIGNGRLGALVW---GGVTSEKLQLNHDTLWT 331
           F+ P  YFT A   G+   G+ +W   G    + LQ+  DTL T
Sbjct: 294 FSLPEEYFTPAPSPGDQSSGSTIWLEGGTPPMDALQIAEDTLQT 337

>HPS1_MOUSE (O08983) Hermansky-Pudlak syndrome 1 protein homolog|
          Length = 704

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +2

Query: 218 PARYFTDAAPIGNGRLGALVW---GGVTSEKLQLNHDT 322
           P  YFT A   G+   G+LVW   G   S+ LQ+  DT
Sbjct: 301 PEEYFTPAPSPGDQSSGSLVWLDGGTPPSDALQMAEDT 338

>IF1AY_PANTR (Q6GVM3) Eukaryotic translation initiation factor 1A, Y-chromosomal|
           (eIF-1A Y isoform) (eIF-4C)
          Length = 143

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 13/70 (18%)
 Frame = +2

Query: 248 IGNGRLGALVWGGV---------TSEKLQLNHDTLWTGGPGNYTNPKAPTVL----SESR 388
           +GNGRL AL + GV           +K+ +N   +   G  +Y + KA  +L     E+R
Sbjct: 41  LGNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEAR 100

Query: 389 SLVDXGLYPE 418
           SL   G  PE
Sbjct: 101 SLKAYGELPE 110

>IF1AY_HUMAN (O14602) Eukaryotic translation initiation factor 1A, Y-chromosomal|
           (eIF-1A Y isoform) (eIF-4C)
          Length = 143

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 13/70 (18%)
 Frame = +2

Query: 248 IGNGRLGALVWGGV---------TSEKLQLNHDTLWTGGPGNYTNPKAPTVL----SESR 388
           +GNGRL AL + GV           +K+ +N   +   G  +Y + KA  +L     E+R
Sbjct: 41  LGNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEAR 100

Query: 389 SLVDXGLYPE 418
           SL   G  PE
Sbjct: 101 SLKAYGELPE 110


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,304,299
Number of Sequences: 219361
Number of extensions: 628009
Number of successful extensions: 1837
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1837
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)