ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl15f09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC007222.5| Homo sapiens chromosome 16 clone RP11-441K8, comp... 46 0.084
2gb|AC079410.3| Homo sapiens chromosome 16 clone CTC-775M10, comp... 46 0.084
3gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 44 0.33
4ref|XM_476225.1| Oryza sativa (japonica cultivar-group), predic... 40 5.2
5ref|XM_475163.1| Oryza sativa (japonica cultivar-group), predic... 40 5.2
6ref|XM_475285.1| Oryza sativa (japonica cultivar-group), predic... 40 5.2
7ref|NM_184999.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.2
8ref|XM_477213.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.2
9gb|AC120535.5| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
10gb|AC139171.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
11gb|AC120987.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
12gb|AC108501.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
13gb|AC104710.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
14gb|AC108502.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
15gb|AC105769.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
16gb|AC098572.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
17gb|AC108874.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
18gb|AC145396.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
19gb|AC121328.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
20gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.2
21gb|AC138001.2| Oryza sativa chromosome 3 BAC OSJNBa0093M23 genom... 40 5.2
22gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 gen... 40 5.2
23dbj|AP003281.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
24gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 geno... 40 5.2
25gb|AC074354.8|AC074354 Genomic Sequence for Oryza sativa, Nippon... 40 5.2
26gb|AC008898.6|AC008898 Homo sapiens chromosome 5 clone CTD-2236M... 40 5.2
27dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
28dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
29dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
30dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
31dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
32dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
33dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
34dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
35dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
36dbj|AP008247.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
37dbj|AP006530.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
38emb|BX248331.8| Zebrafish DNA sequence from clone CH211-236D3 in... 40 5.2
39dbj|AP005390.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
40gb|AC008854.3|AC008854 Homo sapiens chromosome 5 clone CTD-2177J... 40 5.2
41dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
42dbj|AP005967.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
43dbj|AP003545.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
44dbj|AP004340.5| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
45dbj|AP005260.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
46dbj|AP005194.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
47dbj|AP003920.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
48dbj|AP003918.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
49dbj|AP004554.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
50dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
51dbj|AP004661.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
52gb|AC171012.3| Gallus gallus BAC clone CH261-128I7 from chromoso... 40 5.2
53gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
54gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
55gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
56emb|AL954157.3|CNS08CCV Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.2
57emb|AL845343.5|CNS08CB5 Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.2
58emb|BX001060.3|CNS08CE8 Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.2
59emb|AL627204.7| Mouse DNA sequence from clone RP23-118E21 on chr... 40 5.2
60gb|AC068644.15| Homo sapiens 3 BAC RP11-315J22 (Roswell Park Can... 40 5.2 
>gb|AC007222.5| Homo sapiens chromosome 16 clone RP11-441K8, complete sequence
          Length = 187191

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 230   ccaccactcaccgccccaaaccc 252
             |||||||||||||||||||||||
Sbjct: 36975 ccaccactcaccgccccaaaccc 36997
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>gb|AC079410.3| Homo sapiens chromosome 16 clone CTC-775M10, complete sequence
          Length = 116293

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 230  ccaccactcaccgccccaaaccc 252
            |||||||||||||||||||||||
Sbjct: 3407 ccaccactcaccgccccaaaccc 3385
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 55     gcgctcgctgttcggctttgcc 76
              ||||||||||||||||||||||
Sbjct: 511243 gcgctcgctgttcggctttgcc 511264
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>ref|XM_476225.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1032

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 gctcggcgcggcggctagcg 204
           ||||||||||||||||||||
Sbjct: 645 gctcggcgcggcggctagcg 664
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>ref|XM_475163.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1500

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 185 gctcggcgcggcggctagcg 204
           ||||||||||||||||||||
Sbjct: 915 gctcggcgcggcggctagcg 896
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>ref|XM_475285.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1473

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 185 gctcggcgcggcggctagcg 204
           ||||||||||||||||||||
Sbjct: 484 gctcggcgcggcggctagcg 465
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>ref|NM_184999.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2532

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 74  gcctcctcgccgtgctccgc 93
           ||||||||||||||||||||
Sbjct: 122 gcctcctcgccgtgctccgc 141
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>ref|XM_477213.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 294

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 gctcggcgcggcggctagcg 204
           ||||||||||||||||||||
Sbjct: 153 gctcggcgcggcggctagcg 172
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>gb|AC120535.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0092N01, complete sequence
          Length = 161741

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   gctcggcgcggcggctagcg 204
             ||||||||||||||||||||
Sbjct: 16379 gctcggcgcggcggctagcg 16360
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>gb|AC139171.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0024B09, complete sequence
          Length = 132563

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   gctcggcgcggcggctagcg 204
             ||||||||||||||||||||
Sbjct: 38158 gctcggcgcggcggctagcg 38177
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>gb|AC120987.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0007A06, complete sequence
          Length = 148029

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   gctcggcgcggcggctagcg 204
             ||||||||||||||||||||
Sbjct: 23341 gctcggcgcggcggctagcg 23322
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>gb|AC108501.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1354_D07,
              complete sequence
          Length = 156163

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 185    gctcggcgcggcggctagcg 204
              ||||||||||||||||||||
Sbjct: 153329 gctcggcgcggcggctagcg 153310
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>gb|AC104710.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1286_E05,
             complete sequence
          Length = 106212

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   gctcggcgcggcggctagcg 204
             ||||||||||||||||||||
Sbjct: 66078 gctcggcgcggcggctagcg 66059
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>gb|AC108502.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1378_A04,
             complete sequence
          Length = 103458

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   gctcggcgcggcggctagcg 204
             ||||||||||||||||||||
Sbjct: 99167 gctcggcgcggcggctagcg 99186
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>gb|AC105769.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1301_G07,
             complete sequence
          Length = 106166

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   gctcggcgcggcggctagcg 204
             ||||||||||||||||||||
Sbjct: 62654 gctcggcgcggcggctagcg 62673
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>gb|AC098572.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
             OJ1234_D05, complete sequence
          Length = 107476

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   gctcggcgcggcggctagcg 204
             ||||||||||||||||||||
Sbjct: 70069 gctcggcgcggcggctagcg 70050
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>gb|AC108874.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_E12,
              complete sequence
          Length = 121293

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 185    gctcggcgcggcggctagcg 204
              ||||||||||||||||||||
Sbjct: 118763 gctcggcgcggcggctagcg 118744
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>gb|AC145396.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0042F15, complete sequence
          Length = 162959

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   gctcggcgcggcggctagcg 204
             ||||||||||||||||||||
Sbjct: 70650 gctcggcgcggcggctagcg 70631
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>gb|AC121328.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0030E22, complete sequence
          Length = 135468

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   gctcggcgcggcggctagcg 204
             ||||||||||||||||||||
Sbjct: 34592 gctcggcgcggcggctagcg 34573
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 74       gcctcctcgccgtgctccgc 93
                ||||||||||||||||||||
Sbjct: 32085267 gcctcctcgccgtgctccgc 32085286



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 185      gctcggcgcggcggctagcg 204
                ||||||||||||||||||||
Sbjct: 25120403 gctcggcgcggcggctagcg 25120384
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>gb|AC138001.2| Oryza sativa chromosome 3 BAC OSJNBa0093M23 genomic sequence, complete
              sequence
          Length = 170020

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 185    gctcggcgcggcggctagcg 204
              ||||||||||||||||||||
Sbjct: 152210 gctcggcgcggcggctagcg 152191
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>gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete
              sequence
          Length = 134102

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 185    gctcggcgcggcggctagcg 204
              ||||||||||||||||||||
Sbjct: 108434 gctcggcgcggcggctagcg 108415
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>dbj|AP003281.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0560B06
          Length = 161720

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   gctcggcgcggcggctagcg 204
             ||||||||||||||||||||
Sbjct: 53505 gctcggcgcggcggctagcg 53524
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>gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 genomic sequence, complete
             sequence
          Length = 178158

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    gcctcctcgccgtgctccgc 93
             ||||||||||||||||||||
Sbjct: 86392 gcctcctcgccgtgctccgc 86411
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>gb|AC074354.8|AC074354 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0065C16, from Chromosome 10, complete sequence
          Length = 146391

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   gctcggcgcggcggctagcg 204
             ||||||||||||||||||||
Sbjct: 51004 gctcggcgcggcggctagcg 51023
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>gb|AC008898.6|AC008898 Homo sapiens chromosome 5 clone CTD-2236M5, complete sequence
          Length = 91340

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 252  ccacctttccccttccaaga 271
            ||||||||||||||||||||
Sbjct: 1037 ccacctttccccttccaaga 1018
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 185      gctcggcgcggcggctagcg 204
                ||||||||||||||||||||
Sbjct: 18166664 gctcggcgcggcggctagcg 18166683



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 185     gctcggcgcggcggctagcg 204
               ||||||||||||||||||||
Sbjct: 4373758 gctcggcgcggcggctagcg 4373739
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 185      gctcggcgcggcggctagcg 204
                ||||||||||||||||||||
Sbjct: 22477447 gctcggcgcggcggctagcg 22477428



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 185      gctcggcgcggcggctagcg 204
                ||||||||||||||||||||
Sbjct: 10298230 gctcggcgcggcggctagcg 10298249
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 185      gctcggcgcggcggctagcg 204
                ||||||||||||||||||||
Sbjct: 20468286 gctcggcgcggcggctagcg 20468267



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 185     gctcggcgcggcggctagcg 204
               ||||||||||||||||||||
Sbjct: 8469786 gctcggcgcggcggctagcg 8469767
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 185      gctcggcgcggcggctagcg 204
                ||||||||||||||||||||
Sbjct: 26357455 gctcggcgcggcggctagcg 26357474



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 185      gctcggcgcggcggctagcg 204
                ||||||||||||||||||||
Sbjct: 13996466 gctcggcgcggcggctagcg 13996447



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 185      gctcggcgcggcggctagcg 204
                ||||||||||||||||||||
Sbjct: 11761391 gctcggcgcggcggctagcg 11761410
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 185      gctcggcgcggcggctagcg 204
                ||||||||||||||||||||
Sbjct: 10704480 gctcggcgcggcggctagcg 10704499



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 185     gctcggcgcggcggctagcg 204
               ||||||||||||||||||||
Sbjct: 7769674 gctcggcgcggcggctagcg 7769693
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 185      gctcggcgcggcggctagcg 204
                ||||||||||||||||||||
Sbjct: 17089455 gctcggcgcggcggctagcg 17089474



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 185      gctcggcgcggcggctagcg 204
                ||||||||||||||||||||
Sbjct: 15484331 gctcggcgcggcggctagcg 15484312
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 185      gctcggcgcggcggctagcg 204
                ||||||||||||||||||||
Sbjct: 29682396 gctcggcgcggcggctagcg 29682415



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 185      gctcggcgcggcggctagcg 204
                ||||||||||||||||||||
Sbjct: 21083789 gctcggcgcggcggctagcg 21083808



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 185      gctcggcgcggcggctagcg 204
                ||||||||||||||||||||
Sbjct: 18513492 gctcggcgcggcggctagcg 18513473



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 185      gctcggcgcggcggctagcg 204
                ||||||||||||||||||||
Sbjct: 17988014 gctcggcgcggcggctagcg 17987995



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 185      gctcggcgcggcggctagcg 204
                ||||||||||||||||||||
Sbjct: 13526023 gctcggcgcggcggctagcg 13526004



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 185     gctcggcgcggcggctagcg 204
               ||||||||||||||||||||
Sbjct: 7885875 gctcggcgcggcggctagcg 7885856
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 74       gcctcctcgccgtgctccgc 93
                ||||||||||||||||||||
Sbjct: 32175779 gcctcctcgccgtgctccgc 32175798



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 185      gctcggcgcggcggctagcg 204
                ||||||||||||||||||||
Sbjct: 25211712 gctcggcgcggcggctagcg 25211693
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 185      gctcggcgcggcggctagcg 204
                ||||||||||||||||||||
Sbjct: 15037453 gctcggcgcggcggctagcg 15037472
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>dbj|AP008247.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0784G04
          Length = 157458

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   gctcggcgcggcggctagcg 204
             ||||||||||||||||||||
Sbjct: 67046 gctcggcgcggcggctagcg 67065
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>dbj|AP006530.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1329D01
          Length = 141938

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   gctcggcgcggcggctagcg 204
             ||||||||||||||||||||
Sbjct: 63700 gctcggcgcggcggctagcg 63719
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>emb|BX248331.8| Zebrafish DNA sequence from clone CH211-236D3 in linkage group 11,
              complete sequence
          Length = 174071

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 99     ctgccccgcccccgtctata 118
              ||||||||||||||||||||
Sbjct: 112953 ctgccccgcccccgtctata 112934
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>dbj|AP005390.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0075O18
          Length = 125411

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   gctcggcgcggcggctagcg 204
             ||||||||||||||||||||
Sbjct: 91091 gctcggcgcggcggctagcg 91110
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>gb|AC008854.3|AC008854 Homo sapiens chromosome 5 clone CTD-2177J2, complete sequence
          Length = 129538

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 252  ccacctttccccttccaaga 271
            ||||||||||||||||||||
Sbjct: 4805 ccacctttccccttccaaga 4824
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>dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0043B10
          Length = 167399

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 185  gctcggcgcggcggctagcg 204
            ||||||||||||||||||||
Sbjct: 9419 gctcggcgcggcggctagcg 9438
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>dbj|AP005967.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1089G05
          Length = 161420

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   gctcggcgcggcggctagcg 204
             ||||||||||||||||||||
Sbjct: 90307 gctcggcgcggcggctagcg 90326
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>dbj|AP003545.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0613F06
          Length = 184289

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 185    gctcggcgcggcggctagcg 204
              ||||||||||||||||||||
Sbjct: 151846 gctcggcgcggcggctagcg 151827
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>dbj|AP004340.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0523A04
          Length = 149049

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   gctcggcgcggcggctagcg 204
             ||||||||||||||||||||
Sbjct: 18672 gctcggcgcggcggctagcg 18691
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>dbj|AP005260.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0557D09
          Length = 135315

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   gctcggcgcggcggctagcg 204
             ||||||||||||||||||||
Sbjct: 33926 gctcggcgcggcggctagcg 33945
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>dbj|AP005194.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0565A07
          Length = 152191

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 185    gctcggcgcggcggctagcg 204
              ||||||||||||||||||||
Sbjct: 113763 gctcggcgcggcggctagcg 113782
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>dbj|AP003920.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OJ1789_C07
          Length = 138944

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 185  gctcggcgcggcggctagcg 204
            ||||||||||||||||||||
Sbjct: 7007 gctcggcgcggcggctagcg 7026
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>dbj|AP003918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1705_A03
          Length = 168689

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   gctcggcgcggcggctagcg 204
             ||||||||||||||||||||
Sbjct: 39676 gctcggcgcggcggctagcg 39695
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>dbj|AP004554.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0005C02
          Length = 62423

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   gctcggcgcggcggctagcg 204
             ||||||||||||||||||||
Sbjct: 50789 gctcggcgcggcggctagcg 50770
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>dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1770_H02
          Length = 170648

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   gctcggcgcggcggctagcg 204
             ||||||||||||||||||||
Sbjct: 87036 gctcggcgcggcggctagcg 87055
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>dbj|AP004661.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0048E12
          Length = 152543

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   gctcggcgcggcggctagcg 204
             ||||||||||||||||||||
Sbjct: 28357 gctcggcgcggcggctagcg 28338
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>gb|AC171012.3| Gallus gallus BAC clone CH261-128I7 from chromosome ul, complete sequence
          Length = 231142

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 244    cccaaaccccacctttcccc 263
              ||||||||||||||||||||
Sbjct: 132645 cccaaaccccacctttcccc 132626
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 185      gctcggcgcggcggctagcg 204
                ||||||||||||||||||||
Sbjct: 20479558 gctcggcgcggcggctagcg 20479539



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 185     gctcggcgcggcggctagcg 204
               ||||||||||||||||||||
Sbjct: 8474885 gctcggcgcggcggctagcg 8474866
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 185      gctcggcgcggcggctagcg 204
                ||||||||||||||||||||
Sbjct: 22787358 gctcggcgcggcggctagcg 22787339



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 185      gctcggcgcggcggctagcg 204
                ||||||||||||||||||||
Sbjct: 10369927 gctcggcgcggcggctagcg 10369946
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 185      gctcggcgcggcggctagcg 204
                ||||||||||||||||||||
Sbjct: 18092985 gctcggcgcggcggctagcg 18093004



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 185     gctcggcgcggcggctagcg 204
               ||||||||||||||||||||
Sbjct: 4373739 gctcggcgcggcggctagcg 4373720
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>emb|AL954157.3|CNS08CCV Oryza sativa chromosome 12, . BAC OSJNBa0042N11 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 168699

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 185    gctcggcgcggcggctagcg 204
              ||||||||||||||||||||
Sbjct: 130738 gctcggcgcggcggctagcg 130757
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>emb|AL845343.5|CNS08CB5 Oryza sativa chromosome 12, . BAC OSJNBa0028O09 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 155927

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 185    gctcggcgcggcggctagcg 204
              ||||||||||||||||||||
Sbjct: 120342 gctcggcgcggcggctagcg 120361
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>emb|BX001060.3|CNS08CE8 Oryza sativa chromosome 12, . BAC OSJNBa0056M17 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 178147

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   gctcggcgcggcggctagcg 204
             ||||||||||||||||||||
Sbjct: 77953 gctcggcgcggcggctagcg 77972
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>emb|AL627204.7| Mouse DNA sequence from clone RP23-118E21 on chromosome 4, complete
              sequence
          Length = 142447

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 249    accccacctttccccttccaagac 272
              |||||||||||||||||| |||||
Sbjct: 135818 accccacctttccccttctaagac 135795
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>gb|AC068644.15| Homo sapiens 3 BAC RP11-315J22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 178688

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 236    ctcaccgccccaaaccccaccttt 259
              ||||||||||||| ||||||||||
Sbjct: 155383 ctcaccgccccaacccccaccttt 155360


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,930,317
Number of Sequences: 3902068
Number of extensions: 1930317
Number of successful extensions: 38975
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38220
Number of HSP's gapped (non-prelim): 755
length of query: 388
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 366
effective length of database: 17,147,199,772
effective search space: 6275875116552
effective search space used: 6275875116552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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