Clone Name | bastl15f06 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Plus Query: 195 ccctgaattcagcatgacgccggtggttcattgctctgttggcaccatcagcctgttcca 254 |||| |||||| ||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 21695378 ccctaaattcaaaatgaccccggtggttcattgctctgttggcaatatcagcctgttcca 21695437 Query: 255 cataggcagcttcaggcccggccgggaaatacagataagaaggttccgtggttcagagag 314 ||| ||||| |||||||| ||| ||||| || ||||| |||||||| | ||||||| Sbjct: 21695438 catcggcagtttcaggccaagccatgaaatccaaataaggaggttccgcagcacagagag 21695497 Query: 315 gtattcaagagt 326 |||||||||||| Sbjct: 21695498 gtattcaagagt 21695509 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 35 ctttcttcgtttcgtttcgtttcctttc 62 |||||||| |||||||||||||| |||| Sbjct: 1365369 ctttcttcttttcgtttcgtttcttttc 1365396
>dbj|AK069200.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009A08, full insert sequence Length = 2554 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Plus Query: 195 ccctgaattcagcatgacgccggtggttcattgctctgttggcaccatcagcctgttcca 254 |||| |||||| ||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 245 ccctaaattcaaaatgaccccggtggttcattgctctgttggcaatatcagcctgttcca 304 Query: 255 cataggcagcttcaggcccggccgggaaatacagataagaaggttccgtggttcagagag 314 ||| ||||| |||||||| ||| ||||| || ||||| |||||||| | ||||||| Sbjct: 305 catcggcagtttcaggccaagccatgaaatccaaataaggaggttccgcagcacagagag 364 Query: 315 gtattcaagagt 326 |||||||||||| Sbjct: 365 gtattcaagagt 376
>dbj|AK067367.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106B18, full insert sequence Length = 3861 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Plus Query: 195 ccctgaattcagcatgacgccggtggttcattgctctgttggcaccatcagcctgttcca 254 |||| |||||| ||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 238 ccctaaattcaaaatgaccccggtggttcattgctctgttggcaatatcagcctgttcca 297 Query: 255 cataggcagcttcaggcccggccgggaaatacagataagaaggttccgtggttcagagag 314 ||| ||||| |||||||| ||| ||||| || ||||| |||||||| | ||||||| Sbjct: 298 catcggcagtttcaggccaagccatgaaatccaaataaggaggttccgcagcacagagag 357 Query: 315 gtattcaagagt 326 |||||||||||| Sbjct: 358 gtattcaagagt 369
>dbj|AK065699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037H04, full insert sequence Length = 2068 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Plus Query: 195 ccctgaattcagcatgacgccggtggttcattgctctgttggcaccatcagcctgttcca 254 |||| |||||| ||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 245 ccctaaattcaaaatgaccccggtggttcattgctctgttggcaatatcagcctgttcca 304 Query: 255 cataggcagcttcaggcccggccgggaaatacagataagaaggttccgtggttcagagag 314 ||| ||||| |||||||| ||| ||||| || ||||| |||||||| | ||||||| Sbjct: 305 catcggcagtttcaggccaagccatgaaatccaaataaggaggttccgcagcacagagag 364 Query: 315 gtattcaagagt 326 |||||||||||| Sbjct: 365 gtattcaagagt 376
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Plus Query: 195 ccctgaattcagcatgacgccggtggttcattgctctgttggcaccatcagcctgttcca 254 |||| |||||| ||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 21623723 ccctaaattcaaaatgaccccggtggttcattgctctgttggcaatatcagcctgttcca 21623782 Query: 255 cataggcagcttcaggcccggccgggaaatacagataagaaggttccgtggttcagagag 314 ||| ||||| |||||||| ||| ||||| || ||||| |||||||| | ||||||| Sbjct: 21623783 catcggcagtttcaggccaagccatgaaatccaaataaggaggttccgcagcacagagag 21623842 Query: 315 gtattcaagagt 326 |||||||||||| Sbjct: 21623843 gtattcaagagt 21623854 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 35 ctttcttcgtttcgtttcgtttcctttc 62 |||||||| |||||||||||||| |||| Sbjct: 1365369 ctttcttcttttcgtttcgtttcttttc 1365396
>emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa0024C08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 186030 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Minus Query: 195 ccctgaattcagcatgacgccggtggttcattgctctgttggcaccatcagcctgttcca 254 |||| |||||| ||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 117173 ccctaaattcaaaatgaccccggtggttcattgctctgttggcaatatcagcctgttcca 117114 Query: 255 cataggcagcttcaggcccggccgggaaatacagataagaaggttccgtggttcagagag 314 ||| ||||| |||||||| ||| ||||| || ||||| |||||||| | ||||||| Sbjct: 117113 catcggcagtttcaggccaagccatgaaatccaaataaggaggttccgcagcacagagag 117054 Query: 315 gtattcaagagt 326 |||||||||||| Sbjct: 117053 gtattcaagagt 117042
>gb|AC124693.4| Mus musculus BAC clone RP24-167O14 from chromosome 19, complete sequence Length = 160363 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Minus Query: 40 ttcgtttcgtttcgtttcctttcc 63 |||||||||||||||||||||||| Sbjct: 27965 ttcgtttcgtttcgtttcctttcc 27942 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 ttcgtttcgtttcgtttcctttcc 63 |||||||||||||||||| ||||| Sbjct: 27970 ttcgtttcgtttcgtttcgtttcc 27947 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 ttcgtttcgtttcgtttcctttcc 63 ||||||||||||| |||||||||| Sbjct: 27960 ttcgtttcgtttcctttcctttcc 27937
>gb|AC153727.6| Mus musculus BAC clone RP23-354L15 from chromosome 12, complete sequence Length = 202733 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 40 ttcgtttcgtttcgtttccttt 61 |||||||||||||||||||||| Sbjct: 77700 ttcgtttcgtttcgtttccttt 77679
>emb|CT025534.4| M.truncatula DNA sequence from clone MTH2-1H4 on chromosome 3, complete sequence Length = 100991 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 39 cttcgtttcgtttcgtttcctt 60 |||||||||||||||||||||| Sbjct: 46254 cttcgtttcgtttcgtttcctt 46233
>gb|AC091250.2| Mus musculus strain C57BL6/J chromosome 5 clone RP23-315E2, complete sequence Length = 201395 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 38 tcttcgtttcgtttcgtttcctttcc 63 ||||||||||||||| |||||||||| Sbjct: 172322 tcttcgtttcgtttcctttcctttcc 172297
>gb|AC121239.34| Medicago truncatula clone mth1-8p19, complete sequence Length = 100985 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 39 cttcgtttcgtttcgtttcctt 60 |||||||||||||||||||||| Sbjct: 46250 cttcgtttcgtttcgtttcctt 46229
>gb|AC099030.1| Drosophila melanogaster, chromosome 2R, region 53F-54X, BAC clone BACR09M08, complete sequence Length = 179283 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 42 cgtttcgtttcgtttcctttcc 63 |||||||||||||||||||||| Sbjct: 89686 cgtttcgtttcgtttcctttcc 89707
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 39 cttcgtttcgtttcgtttcctt 60 |||||||||||||||||||||| Sbjct: 17517649 cttcgtttcgtttcgtttcctt 17517628 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 133 ccgcgggagctcgccgtcgccc 154 |||||||||||||||||||||| Sbjct: 16855236 ccgcgggagctcgccgtcgccc 16855257
>dbj|AP005755.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0019B14 Length = 127570 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 39 cttcgtttcgtttcgtttcctt 60 |||||||||||||||||||||| Sbjct: 81827 cttcgtttcgtttcgtttcctt 81806
>dbj|AP005559.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1163_C07 Length = 107121 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 133 ccgcgggagctcgccgtcgccc 154 |||||||||||||||||||||| Sbjct: 52927 ccgcgggagctcgccgtcgccc 52948
>emb|AL929128.4| Zebrafish DNA sequence from clone CH211-203P17 in linkage group 17, complete sequence Length = 100859 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 40 ttcgtttcgtttcgtttcctttccag 65 |||||||||||||||||| ||||||| Sbjct: 77531 ttcgtttcgtttcgtttcgtttccag 77556
>dbj|AK063736.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-F03, full insert sequence Length = 535 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 133 ccgcgggagctcgccgtcgccc 154 |||||||||||||||||||||| Sbjct: 127 ccgcgggagctcgccgtcgccc 148
>gb|AE003805.3| Drosophila melanogaster chromosome 2R, section 45 of 73 of the complete sequence Length = 272948 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 42 cgtttcgtttcgtttcctttcc 63 |||||||||||||||||||||| Sbjct: 208183 cgtttcgtttcgtttcctttcc 208204
>dbj|D85517.1| Mesocricetus auratus gene for chymase 1, complete cds Length = 3888 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 347 ggctgctgcagccacagacacc 368 |||||||||||||||||||||| Sbjct: 3865 ggctgctgcagccacagacacc 3844
>gb|AC004641.1|AC004641 Drosophila melanogaster DNA sequence (P1s DS07321 (D175), DS05993 (D241), and DS06306 (D173)), complete sequence Length = 154985 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 42 cgtttcgtttcgtttcctttcc 63 |||||||||||||||||||||| Sbjct: 16111 cgtttcgtttcgtttcctttcc 16090
>gb|AC153488.1| Tribolium castaneum BAC T.cast_C24H10 (Clemson University Genomics Institute Tribolium castaneum BAC Library (Red Flour Beetle)) complete sequence Length = 40580 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 81 cccagcgacccctccgcctcctcct 105 |||||||||||||||| |||||||| Sbjct: 25930 cccagcgacccctccgtctcctcct 25954
>gb|AC152927.1| Tribolium castaneum BAC T.cast_C19N19 (Clemson University Genomics Institute Tribolium castaneum BAC Library (Red Flour Beetle)) complete sequence Length = 137018 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 81 cccagcgacccctccgcctcctcct 105 |||||||||||||||| |||||||| Sbjct: 27876 cccagcgacccctccgtctcctcct 27852
>ref|NM_020248.2| Homo sapiens catenin, beta interacting protein 1 (CTNNBIP1), transcript variant 1, mRNA Length = 2995 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 tggcaccatcagcctgttcca 254 ||||||||||||||||||||| Sbjct: 2405 tggcaccatcagcctgttcca 2425
>ref|NM_001012329.1| Homo sapiens catenin, beta interacting protein 1 (CTNNBIP1), transcript variant 2, mRNA Length = 2961 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 tggcaccatcagcctgttcca 254 ||||||||||||||||||||| Sbjct: 2371 tggcaccatcagcctgttcca 2391
>gb|AC010124.6| Drosophila melanogaster clone BACR06O03, complete sequence Length = 193483 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 ttcgtttcgtttcgtttcctt 60 ||||||||||||||||||||| Sbjct: 82035 ttcgtttcgtttcgtttcctt 82015
>gb|U42846.1| Caenorhabditis elegans cosmid T19D2, complete sequence Length = 28406 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 36 tttcttcgtttcgtttcgttt 56 ||||||||||||||||||||| Sbjct: 17138 tttcttcgtttcgtttcgttt 17118
>emb|BX936420.9| Zebrafish DNA sequence from clone DKEY-7F16 in linkage group 3, complete sequence Length = 168285 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 40 ttcgtttcgtttcgtttcctttcca 64 |||||||||||||||||| |||||| Sbjct: 84109 ttcgtttcgtttcgtttcatttcca 84085
>emb|AL357140.33| Human DNA sequence from clone RP11-84A14 on chromosome 1 Contains the 5' end of the CLSTN1 gene for calsyntenin 1, the CTNNBIP1 gene for catenin, beta interacting protein 1, two novel genes, the LZIC gene for leucine zipper and CTNNBIP1 domain containing, the 5' end of the NMNAT1 gene for nicotinamide nucleotide adenylyltransferase 1 and a CpG island, complete sequence Length = 177470 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 234 tggcaccatcagcctgttcca 254 ||||||||||||||||||||| Sbjct: 53733 tggcaccatcagcctgttcca 53713
>emb|X79328.1|RNCABP1 R.norvegicus (Wistar) CaBP1 mRNA Length = 1296 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 344 atgggctgctgcagccacaga 364 ||||||||||||||||||||| Sbjct: 570 atgggctgctgcagccacaga 590
>gb|AC091226.3| Drosophila melanogaster 3L BAC RP98-3I13 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 165518 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 36 tttcttcgtttcgtttcgttt 56 ||||||||||||||||||||| Sbjct: 58939 tttcttcgtttcgtttcgttt 58919
>emb|CR606136.1| full-length cDNA clone CS0DD003YG21 of Neuroblastoma Cot 50-normalized of Homo sapiens (human) Length = 946 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 tggcaccatcagcctgttcca 254 ||||||||||||||||||||| Sbjct: 376 tggcaccatcagcctgttcca 396
>ref|NM_001039430.1| Tribolium castaneum abdominal-B (abd-B), mRNA Length = 2683 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 81 cccagcgacccctccgcctcctcct 105 |||||||||||||||| |||||||| Sbjct: 539 cccagcgacccctccgtctcctcct 563
>gb|AC158653.7| Mus musculus 6 BAC RP23-418F10 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 185818 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 40 ttcgtttcgtttcgtttcctttcca 64 |||||||||||||||||| |||||| Sbjct: 108536 ttcgtttcgtttcgtttcatttcca 108560
>ref|XM_576132.1| PREDICTED: Rattus norvegicus thioredoxin domain containing 7 (Txndc7), mRNA Length = 2122 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 344 atgggctgctgcagccacaga 364 ||||||||||||||||||||| Sbjct: 641 atgggctgctgcagccacaga 661
>gb|AF227923.1|AF227923 Tribolium castaneum abdominal-B mRNA, complete cds Length = 2683 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 81 cccagcgacccctccgcctcctcct 105 |||||||||||||||| |||||||| Sbjct: 539 cccagcgacccctccgtctcctcct 563
>gb|AE003685.5| Drosophila melanogaster chromosome 3R, section 23 of 118 of the complete sequence Length = 241476 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 ttcgtttcgtttcgtttcctt 60 ||||||||||||||||||||| Sbjct: 32978 ttcgtttcgtttcgtttcctt 32998
>gb|AE003537.3| Drosophila melanogaster chromosome 3L, section 48 of 83 of the complete sequence Length = 282116 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 36 tttcttcgtttcgtttcgttt 56 ||||||||||||||||||||| Sbjct: 122762 tttcttcgtttcgtttcgttt 122742
>gb|BC082063.1| Rattus norvegicus protein disulfide isomerase associated 6, mRNA (cDNA clone MGC:95222 IMAGE:7132589), complete cds Length = 1744 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 344 atgggctgctgcagccacaga 364 ||||||||||||||||||||| Sbjct: 630 atgggctgctgcagccacaga 650
>emb|AJ509465.1|AME509465 Apis mellifera microsatellite marker Am0234=AP242 Length = 252 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 ttcttcgtttcgtttcgtttc 57 ||||||||||||||||||||| Sbjct: 138 ttcttcgtttcgtttcgtttc 118
>ref|NM_001004442.1| Rattus norvegicus protein disulfide isomerase associated 6 (Pdia6), mRNA Length = 1744 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 344 atgggctgctgcagccacaga 364 ||||||||||||||||||||| Sbjct: 630 atgggctgctgcagccacaga 650
>dbj|AB021262.1| Homo sapiens mRNA for beta-catenin-interacting protein ICAT, complete cds Length = 2980 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 tggcaccatcagcctgttcca 254 ||||||||||||||||||||| Sbjct: 2371 tggcaccatcagcctgttcca 2391
>ref|XM_550264.1| Oryza sativa (japonica cultivar-group), mRNA Length = 378 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 83 cagcgacccctccgcctcctcctc 106 ||||||||||||| |||||||||| Sbjct: 207 cagcgacccctcctcctcctcctc 184
>ref|NM_188669.1| Oryza sativa (japonica cultivar-group), Ozsa8272 predicted mRNA Length = 1242 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 83 cagcgacccctccgcctcctcctc 106 ||||||||||||| |||||||||| Sbjct: 538 cagcgacccctcctcctcctcctc 515
>gb|AC163295.2| Mus musculus BAC clone RP23-132K20 from chromosome 14, complete sequence Length = 212576 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 ccacagacaccattccacct 377 |||||||||||||||||||| Sbjct: 66073 ccacagacaccattccacct 66092
>gb|BT018681.1| Zea mays clone EL01N0511F02.d mRNA sequence Length = 1696 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 89 cccctccgcctcctcctcagcgctccct 116 ||||||| ||||||||||| |||||||| Sbjct: 57 cccctcctcctcctcctcatcgctccct 30
>gb|AE017356.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 14, complete sequence Length = 762694 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 gccatcagtctatcacctct 29 |||||||||||||||||||| Sbjct: 442016 gccatcagtctatcacctct 442035
>gb|AY022736.1| Oryza sativa microsatellite MRG5061 containing (CCT)X8, genomic sequence Length = 224 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 cagcgacccctccgcctcctcctc 106 ||||||||||||| |||||||||| Sbjct: 93 cagcgacccctcctcctcctcctc 116
>gb|AC007862.7| Trypanosoma brucei chromosome 2 clone RPCI93-10C8, complete sequence Length = 150671 Score = 40.1 bits (20), Expect = 5.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 33 ctctttcttcgtttcgtttcgtttcctttcca 64 |||||||||| |||| |||| ||||||||||| Sbjct: 69631 ctctttcttcatttcatttcatttcctttcca 69662
>gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence Length = 1193948 Score = 40.1 bits (20), Expect = 5.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 33 ctctttcttcgtttcgtttcgtttcctttcca 64 |||||||||| |||| |||| ||||||||||| Sbjct: 548035 ctctttcttcatttcatttcatttcctttcca 548066
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 gcgggagctcgccgtcgccc 154 |||||||||||||||||||| Sbjct: 1694630 gcgggagctcgccgtcgccc 1694611
>ref|XM_414581.1| PREDICTED: Gallus gallus similar to ring finger protein 127 (LOC416263), mRNA Length = 3615 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 cagcgacccctccgcctcctcctc 106 |||||||||||||||||| ||||| Sbjct: 1797 cagcgacccctccgcctcatcctc 1820
>gb|AC110262.12| Mus musculus chromosome 17, clone RP23-291L10, complete sequence Length = 210850 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 ttcgtttcgtttcgtttcctttcc 63 |||||||| ||||||||||||||| Sbjct: 130295 ttcgtttcctttcgtttcctttcc 130272
>ref|XM_568626.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNN01520) partial mRNA Length = 1058 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 gccatcagtctatcacctct 29 |||||||||||||||||||| Sbjct: 706 gccatcagtctatcacctct 725
>emb|AL160396.33| Human DNA sequence from clone RP11-569D9 on chromosome 13 Contains the CDC16 gene for CDC16 cell division cycle 16 homolog (S. cerevisiae), the gene for similar to yeast Upf3, variant A (UPF3A, HUPF3A, RENT3A), a Charot-Leyden crystal protein (CLC) pseudogene, the 5' end of the gene for a novel protein (KIAA1802) and 6 CpG islands, complete sequence Length = 172437 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 gctccctctcctcaccacgg 129 |||||||||||||||||||| Sbjct: 19612 gctccctctcctcaccacgg 19631
>gb|AC040970.7| Homo sapiens chromosome 8, clone RP11-809O17, complete sequence Length = 183894 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 cagccacagacaccattcca 374 |||||||||||||||||||| Sbjct: 19300 cagccacagacaccattcca 19281
>emb|AL133214.12| Human DNA sequence from clone RP11-163F8 on chromosome 9p21.2-23 Contains the 3' end of a novel gene (FLJ20276), the 5' end of the SH3GL2 gene for SH3-domain GRB2-like 2 (CNSA2, SH3P4, EEN-B1, SH3D2A), a poly(A)-binding protein pseudogene and a CpG Island, complete sequence Length = 154621 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 40 ttcgtttcgtttcgtttcctttcc 63 |||||||| ||||||||||||||| Sbjct: 125886 ttcgtttcctttcgtttcctttcc 125909
>gb|AC158795.4| Mus musculus chromosome 3, clone RP23-261G9, complete sequence Length = 155916 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 ttcgtttcgtttcgtttcctttcc 63 |||||||||||||||||| ||||| Sbjct: 40672 ttcgtttcgtttcgtttcttttcc 40649 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 ttcgtttcgtttcgtttcctttcc 63 ||||||||||||| |||||||||| Sbjct: 40667 ttcgtttcgtttcttttcctttcc 40644
>emb|AL645685.12| Mouse DNA sequence from clone RP23-198I4 on chromosome 1 Contains a ribosomal protein S13 (Rps13) pseudogene, a ribosomal protein S27 (Rps27) pseudogene a novel genes and the 3' end of a novel gene, complete sequence Length = 218950 Score = 40.1 bits (20), Expect = 5.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 32 gctctttcttcgtttcgtttcgtttcctttcc 63 ||||||||||| |||| |||| |||||||||| Sbjct: 86809 gctctttcttcctttcctttcctttcctttcc 86778
>gb|AC040904.4| Homo sapiens chromosome 17, clone RP11-619I22, complete sequence Length = 173651 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ccctccgcctcctcctcagc 109 |||||||||||||||||||| Sbjct: 123299 ccctccgcctcctcctcagc 123280
>gb|AC156608.10| Mus musculus chromosome 8, clone RP23-303A11, complete sequence Length = 229633 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 ctctttcttcgtttcgtttc 52 |||||||||||||||||||| Sbjct: 96362 ctctttcttcgtttcgtttc 96343
>gb|AC100860.2| Homo sapiens chromosome 8, clone RP11-128L5, complete sequence Length = 181610 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 cagccacagacaccattcca 374 |||||||||||||||||||| Sbjct: 34638 cagccacagacaccattcca 34657
>gb|AF355593.1|AF355593 Filobasidiella neoformans var. neoformans O-acetyltransferase (CAS1) gene, complete cds Length = 4370 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 gccatcagtctatcacctct 29 |||||||||||||||||||| Sbjct: 3749 gccatcagtctatcacctct 3730
>gb|AF355592.1|AF355592 Filobasidiella neoformans var. neoformans O-acetyltransferase (CAS1) gene, complete cds Length = 4463 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 gccatcagtctatcacctct 29 |||||||||||||||||||| Sbjct: 4069 gccatcagtctatcacctct 4050
>dbj|AK044279.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930005F14 product:hypothetical protein, full insert sequence Length = 2823 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 39 cttcgtttcgtttcgtttcctttc 62 ||||||||||||||||||| |||| Sbjct: 788 cttcgtttcgtttcgtttcgtttc 765 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 ttcgtttcgtttcgtttcctttcc 63 |||||||||||||||||| ||||| Sbjct: 782 ttcgtttcgtttcgtttcgtttcc 759 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ttcgtttcgtttcgtttcct 59 |||||||||||||||||||| Sbjct: 777 ttcgtttcgtttcgtttcct 758
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 cagcgacccctccgcctcctcctc 106 ||||||||||||| |||||||||| Sbjct: 7526435 cagcgacccctcctcctcctcctc 7526458 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 83 cagcgacccctccgcctcctcctc 106 ||||||||||||| |||||||||| Sbjct: 3574225 cagcgacccctcctcctcctcctc 3574202
>gb|AC007381.3| Homo sapiens BAC clone RP11-158I21 from 2, complete sequence Length = 152081 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 40 ttcgtttcgtttcgtttcctttcc 63 ||||||||||||| |||||||||| Sbjct: 85252 ttcgtttcgtttcctttcctttcc 85275 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 tttcgtttcgtttcctttcc 63 |||||||||||||||||||| Sbjct: 85251 tttcgtttcgtttcctttcc 85270
>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0708G02 Length = 168976 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 cagcgacccctccgcctcctcctc 106 ||||||||||||| |||||||||| Sbjct: 75227 cagcgacccctcctcctcctcctc 75250
>dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1276_B06 Length = 175174 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 83 cagcgacccctccgcctcctcctc 106 ||||||||||||| |||||||||| Sbjct: 142293 cagcgacccctcctcctcctcctc 142270
>dbj|AB009052.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNF13 Length = 85992 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 39 cttcgtttcgtttcgtttcctttc 62 ||||||||||||||||||| |||| Sbjct: 27618 cttcgtttcgtttcgtttcgtttc 27641
>gb|AC154275.2| Mus musculus BAC clone RP24-299G8 from chromosome 16, complete sequence Length = 183487 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 39 cttcgtttcgtttcgtttcctttc 62 ||||||||||||||||||| |||| Sbjct: 136535 cttcgtttcgtttcgtttcgtttc 136512 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 ttcgtttcgtttcgtttcctttcc 63 |||||||||||||||||| ||||| Sbjct: 136529 ttcgtttcgtttcgtttcgtttcc 136506 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ttcgtttcgtttcgtttcct 59 |||||||||||||||||||| Sbjct: 136524 ttcgtttcgtttcgtttcct 136505
>emb|BX000507.2|CNS08CDX Oryza sativa chromosome 12, . BAC OJ1003_C01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 157453 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 35 ctttcttcgtttcgtttcgtttcctttc 62 |||||||| |||||||||||||| |||| Sbjct: 63800 ctttcttcttttcgtttcgtttcttttc 63773
>gb|AC138313.4| Mus musculus BAC clone RP23-243P9 from 9, complete sequence Length = 195883 Score = 40.1 bits (20), Expect = 5.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 32 gctctttcttcgtttcgtttcgtttcctttcc 63 ||||||||||| |||| |||| |||||||||| Sbjct: 91181 gctctttcttcctttcctttcctttcctttcc 91150 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,415,067 Number of Sequences: 3902068 Number of extensions: 3415067 Number of successful extensions: 76662 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76076 Number of HSP's gapped (non-prelim): 575 length of query: 396 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 374 effective length of database: 17,147,199,772 effective search space: 6413052714728 effective search space used: 6413052714728 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)